Wall clock time and date at job start Tue Mar 31 2020 05:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 110.91392 * 2 1 4 4 C 1.34778 * 119.99873 * 62.45132 * 3 2 1 5 5 O 1.21627 * 120.00061 * 0.02562 * 4 3 2 6 6 C 1.47270 * 119.99711 * 180.02562 * 4 3 2 7 7 C 1.35211 * 123.13865 * 179.73141 * 6 4 3 8 8 S 1.70936 * 108.82788 * 179.89960 * 7 6 4 9 9 C 1.70771 * 91.12923 * 0.30107 * 8 7 6 10 10 N 1.28648 * 110.56050 * 359.82330 * 9 8 7 11 11 C 1.55448 * 111.11787 * 236.00911 * 2 1 3 12 12 C 1.54321 * 102.96961 * 206.45980 * 11 2 1 13 13 N 1.47026 * 107.26791 * 22.19024 * 12 11 2 14 14 C 1.36940 * 125.64258 * 181.03445 * 13 12 11 15 15 H 1.08003 * 119.99660 * 180.02562 * 14 13 12 16 16 C 1.38811 * 120.00559 * 0.02875 * 14 13 12 17 17 N 1.31617 * 119.99776 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00230 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46764 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46723 * 120.00066 * 18 16 14 21 21 H 1.48499 * 109.47140 * 239.99844 * 18 16 14 22 22 C 1.47419 * 108.70576 * 1.06162 * 13 12 11 23 23 H 1.09000 * 109.47194 * 297.54709 * 1 2 3 24 24 H 1.09001 * 109.47578 * 57.55154 * 1 2 3 25 25 H 1.09003 * 109.46933 * 177.54882 * 1 2 3 26 26 H 0.97001 * 120.00055 * 242.45381 * 3 2 1 27 27 H 1.08006 * 125.58208 * 0.02562 * 7 6 4 28 28 H 1.07997 * 124.72179 * 179.81609 * 9 8 7 29 29 H 1.08998 * 110.70855 * 88.08785 * 11 2 1 30 30 H 1.08998 * 110.85957 * 324.90400 * 11 2 1 31 31 H 1.08998 * 109.88101 * 262.77542 * 12 11 2 32 32 H 1.09000 * 109.88483 * 141.60664 * 12 11 2 33 33 H 0.97004 * 120.00521 * 179.97438 * 17 16 14 34 34 H 1.09002 * 110.36926 * 94.70918 * 22 13 12 35 35 H 1.08995 * 110.36556 * 216.92202 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0530 1.3685 0.0000 4 6 1.7892 2.1907 1.0349 5 8 1.1175 1.7963 1.9690 6 6 2.3145 3.5665 1.0346 7 6 2.0848 4.4456 2.0359 8 16 2.8620 5.9217 1.6631 9 6 3.4410 5.2836 0.1888 10 7 3.0575 4.0643 0.0427 11 6 2.0901 -0.8107 -1.2023 12 6 3.4707 -1.2757 -0.6934 13 7 3.4280 -1.2429 0.7759 14 6 4.4639 -1.5649 1.6117 15 1 4.3314 -1.5089 2.6821 16 6 5.6841 -1.9633 1.0833 17 7 5.8454 -2.0320 -0.2211 18 14 7.0973 -2.4018 2.2235 19 1 6.6619 -2.2444 3.6345 20 1 7.5061 -3.8096 1.9861 21 1 8.2469 -1.5007 1.9562 22 6 2.0853 -0.8066 1.2002 23 1 -0.3633 0.4753 0.9111 24 1 -0.3634 0.5514 -0.8672 25 1 -0.3633 -1.0268 -0.0440 26 1 2.5890 1.6829 -0.7448 27 1 1.5068 4.2469 2.9264 28 1 4.0449 5.8278 -0.5221 29 1 2.1972 -0.1737 -2.0803 30 1 1.4525 -1.6665 -1.4240 31 1 4.2461 -0.6014 -1.0569 32 1 3.6693 -2.2913 -1.0359 33 1 6.6982 -2.3100 -0.5905 34 1 1.4520 -1.6704 1.4024 35 1 2.1542 -0.1725 2.0841 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046181608.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:42 Heat of formation + Delta-G solvation = 40.531134 kcal Electronic energy + Delta-G solvation = -20202.082488 eV Core-core repulsion = 17134.978184 eV Total energy + Delta-G solvation = -3067.104304 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.42756 -38.96126 -37.03154 -33.89825 -31.85663 -30.67856 -29.88689 -28.62039 -25.96155 -25.57210 -23.70485 -22.70211 -20.32516 -19.70369 -19.21321 -18.54536 -16.97216 -16.25591 -15.71010 -15.22503 -15.17089 -14.57440 -13.99718 -13.87250 -13.55731 -13.45118 -13.17579 -12.76614 -12.04785 -12.01467 -11.85621 -11.73884 -11.61316 -10.87368 -10.83922 -10.41225 -10.30853 -10.01587 -9.97355 -9.95073 -9.81611 -9.60764 -9.40874 -9.09256 -8.58454 -8.46285 -6.73725 -5.65238 -2.96748 0.48850 1.16856 1.51545 2.07768 3.43138 3.48884 3.51396 3.51674 3.67408 4.13315 4.55547 4.94114 5.10199 5.19434 5.29506 5.42990 5.53679 5.66586 5.78624 5.83375 6.06231 6.19327 6.20482 6.39253 6.45456 6.58975 6.72761 6.86651 7.16396 7.35288 7.60989 7.64068 7.86378 7.99578 8.32166 8.58079 9.29330 9.89489 10.55829 11.47013 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.016111 B = 0.005741 C = 0.004790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.554638 B = 4875.852587 C = 5844.233154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.154 3.846 3 N -0.680 5.680 4 C 0.595 3.405 5 O -0.537 6.537 6 C 0.015 3.985 7 C -0.224 4.224 8 S 0.192 5.808 9 C -0.001 4.001 10 N -0.437 5.437 11 C -0.146 4.146 12 C 0.177 3.823 13 N -0.603 5.603 14 C -0.219 4.219 15 H 0.076 0.924 16 C -0.011 4.011 17 N -0.924 5.924 18 Si 0.910 3.090 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.292 1.292 22 C 0.131 3.869 23 H 0.070 0.930 24 H 0.050 0.950 25 H 0.064 0.936 26 H 0.407 0.593 27 H 0.189 0.811 28 H 0.204 0.796 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.250 0.750 34 H 0.026 0.974 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.330 15.682 -1.208 17.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.067 3.933 3 N -0.329 5.329 4 C 0.377 3.623 5 O -0.414 6.414 6 C -0.120 4.120 7 C -0.366 4.366 8 S 0.446 5.554 9 C -0.301 4.301 10 N -0.152 5.152 11 C -0.184 4.184 12 C 0.053 3.947 13 N -0.329 5.329 14 C -0.348 4.348 15 H 0.094 0.906 16 C -0.207 4.207 17 N -0.572 5.572 18 Si 0.741 3.259 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.219 1.219 22 C 0.004 3.996 23 H 0.089 0.911 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.242 0.758 27 H 0.206 0.794 28 H 0.221 0.779 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.319 15.928 -0.593 17.980 hybrid contribution 0.941 -0.969 0.102 1.355 sum -7.378 14.959 -0.492 16.687 Atomic orbital electron populations 1.21984 0.94269 1.02073 1.02369 1.21606 0.92578 0.80592 0.98511 1.45625 1.52978 1.12242 1.22096 1.16943 0.79954 0.82641 0.82714 1.90757 1.39992 1.75539 1.35155 1.20697 1.01790 0.97655 0.91857 1.26592 1.06916 0.97553 1.05507 1.82808 1.42726 1.13215 1.16618 1.28457 1.05504 0.94664 1.01431 1.66963 1.10430 1.10798 1.26968 1.23273 1.00481 0.98805 0.95877 1.21154 0.90039 0.99865 0.83676 1.44443 1.07778 1.78827 1.01837 1.19105 0.89403 1.37280 0.88976 0.90588 1.24762 0.97723 1.02157 0.96008 1.69961 1.23903 1.54174 1.09210 0.86064 0.82484 0.77684 0.79714 1.20569 1.21782 1.21900 1.21888 0.87605 0.94883 0.95219 0.91081 0.93086 0.91706 0.75775 0.79377 0.77944 0.91730 0.90792 0.93612 0.93800 0.93955 0.95611 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.60 37.16 0.32 -2.04 16 2 C 0.15 2.89 0.83 -129.51 -0.11 2.79 16 3 N -0.68 -12.52 5.17 -46.58 -0.24 -12.76 16 4 C 0.59 11.07 7.19 -12.59 -0.09 10.98 16 5 O -0.54 -10.96 13.51 5.25 0.07 -10.89 16 6 C 0.01 0.23 6.70 -84.52 -0.57 -0.33 16 7 C -0.22 -2.85 10.62 29.65 0.31 -2.53 16 8 S 0.19 1.69 22.96 -107.50 -2.47 -0.77 16 9 C 0.00 -0.01 12.17 51.43 0.63 0.62 16 10 N -0.44 -6.34 10.12 -12.36 -0.13 -6.46 16 11 C -0.15 -2.72 6.00 -24.74 -0.15 -2.87 16 12 C 0.18 4.36 5.36 -3.06 -0.02 4.35 16 13 N -0.60 -16.03 3.39 -170.08 -0.58 -16.61 16 14 C -0.22 -6.40 10.28 -15.06 -0.15 -6.55 16 15 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 16 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 17 N -0.92 -27.70 10.31 55.49 0.57 -27.13 16 18 Si 0.91 22.92 29.55 -169.99 -5.02 17.90 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 C 0.13 2.99 6.10 -2.53 -0.02 2.98 16 23 H 0.07 1.21 6.53 -51.93 -0.34 0.87 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 26 H 0.41 7.20 8.01 -40.82 -0.33 6.87 16 27 H 0.19 2.22 8.03 -52.48 -0.42 1.80 16 28 H 0.20 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.06 1.07 8.05 -51.93 -0.42 0.65 16 30 H 0.07 1.27 8.03 -51.93 -0.42 0.85 16 31 H 0.05 1.24 7.38 -51.93 -0.38 0.86 16 32 H 0.04 1.19 7.51 -51.93 -0.39 0.80 16 33 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.03 0.59 8.04 -51.93 -0.42 0.17 16 35 H 0.06 1.36 6.31 -51.93 -0.33 1.03 16 LS Contribution 304.04 15.07 4.58 4.58 Total: -1.00 -33.86 304.04 -7.40 -41.26 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -4.25 Total: 3.93 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 0.07 Total: 6.96 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: -0.37 Total: -62.96 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.07 Total: -10.89 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.47 Total: -0.77 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.86 -7.40 -41.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046181608.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.790 kcal (2) G-P(sol) polarization free energy of solvation -33.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds