Wall clock time and date at job start Tue Mar 31 2020 05:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46499 * 110.64218 * 2 1 4 4 C 1.34777 * 119.99665 * 298.58923 * 3 2 1 5 5 O 1.21633 * 120.00238 * 359.72097 * 4 3 2 6 6 C 1.47102 * 119.99517 * 179.72418 * 4 3 2 7 7 C 1.38390 * 127.99414 * 179.97438 * 6 4 3 8 8 C 1.37573 * 111.26164 * 180.02562 * 7 6 4 9 9 N 1.29561 * 117.95026 * 359.97438 * 8 7 6 10 10 S 1.56303 * 110.37858 * 359.69770 * 9 8 7 11 11 C 1.55159 * 110.86812 * 123.24896 * 2 1 3 12 12 C 1.54914 * 101.58001 * 153.93823 * 11 2 1 13 13 N 1.47422 * 104.82830 * 322.98651 * 12 11 2 14 14 C 1.36941 * 125.64691 * 204.09132 * 13 12 11 15 15 H 1.08006 * 119.99703 * 180.02562 * 14 13 12 16 16 C 1.38815 * 119.99969 * 0.04401 * 14 13 12 17 17 N 1.31616 * 120.00036 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99948 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46619 * 90.00071 * 18 16 14 20 20 H 1.48493 * 109.47321 * 210.00071 * 18 16 14 21 21 H 1.48500 * 109.47295 * 330.00376 * 18 16 14 22 22 C 1.47022 * 108.70646 * 24.13126 * 13 12 11 23 23 H 1.08993 * 109.46780 * 59.30062 * 1 2 3 24 24 H 1.09000 * 109.46962 * 179.30237 * 1 2 3 25 25 H 1.08998 * 109.47327 * 299.29931 * 1 2 3 26 26 H 0.97001 * 119.99790 * 118.30636 * 3 2 1 27 27 H 1.08002 * 124.37060 * 359.97069 * 7 6 4 28 28 H 1.08005 * 121.02545 * 179.97438 * 8 7 6 29 29 H 1.09000 * 111.00124 * 272.00492 * 11 2 1 30 30 H 1.09000 * 111.01016 * 35.86137 * 11 2 1 31 31 H 1.08999 * 110.36684 * 204.15154 * 12 11 2 32 32 H 1.09001 * 110.36691 * 81.82586 * 12 11 2 33 33 H 0.96999 * 119.99994 * 179.97438 * 17 16 14 34 34 H 1.08996 * 109.88366 * 239.52225 * 22 13 12 35 35 H 1.08994 * 110.01276 * 118.42705 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0465 1.3709 0.0000 4 6 1.7614 2.1984 -1.0249 5 8 1.0795 1.8054 -1.9523 6 6 2.2749 3.5769 -1.0220 7 6 2.0865 4.5582 -1.9794 8 6 2.7234 5.7261 -1.6287 9 7 3.3774 5.7491 -0.5105 10 16 3.2704 4.3667 0.2111 11 6 2.0828 -0.7949 1.2125 12 6 3.4674 -1.2455 0.6838 13 7 3.2471 -1.5462 -0.7425 14 6 4.0077 -2.3901 -1.5070 15 1 3.7633 -2.5439 -2.5478 16 6 5.0927 -3.0482 -0.9443 17 7 5.3901 -2.8614 0.3241 18 14 6.1299 -4.1999 -1.9870 19 1 7.2366 -3.4358 -2.6168 20 1 6.6944 -5.2718 -1.1283 21 1 5.2832 -4.8076 -3.0449 22 6 2.0761 -0.7892 -1.2086 23 1 -0.3632 0.5246 -0.8836 24 1 -0.3633 -1.0276 -0.0125 25 1 -0.3634 0.5029 0.8962 26 1 2.5903 1.6843 0.7396 27 1 1.5142 4.4242 -2.8854 28 1 2.6795 6.5971 -2.2658 29 1 2.1887 -0.1515 2.0859 30 1 1.4514 -1.6547 1.4367 31 1 3.8031 -2.1379 1.2121 32 1 4.1955 -0.4419 0.7941 33 1 6.1480 -3.3216 0.7175 34 1 1.3141 -1.4754 -1.5780 35 1 2.3687 -0.0994 -2.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046357639.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:31 Heat of formation + Delta-G solvation = 41.347722 kcal Electronic energy + Delta-G solvation = -19970.450931 eV Core-core repulsion = 16903.382037 eV Total energy + Delta-G solvation = -3067.068894 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.10573 -39.14104 -37.25534 -34.09116 -32.30212 -31.32467 -29.94988 -28.71170 -26.17695 -25.66866 -23.74696 -22.43134 -20.50542 -19.95406 -19.31787 -18.44878 -17.18142 -16.65317 -15.67017 -15.19932 -15.11257 -14.69266 -14.26502 -13.91895 -13.69025 -13.47621 -13.09949 -12.80917 -12.27954 -12.09114 -11.80436 -11.59576 -11.42399 -10.95370 -10.91503 -10.85889 -10.48497 -10.39000 -10.09334 -10.04384 -9.79131 -9.70365 -9.46638 -8.99385 -8.76020 -8.64700 -6.82054 -5.65654 -3.06031 0.20758 1.16736 1.73976 2.10824 3.14730 3.26148 3.40896 3.46123 3.47892 4.49106 4.62243 4.84138 4.96772 5.14163 5.34506 5.46442 5.53383 5.53834 5.67844 5.70709 5.96322 6.11465 6.17875 6.29324 6.32794 6.41013 6.46171 6.64104 6.79614 7.05665 7.43304 7.60961 7.65961 7.82379 8.28420 8.35632 9.22777 9.83377 10.47801 11.38791 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.020741 B = 0.004895 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.670447 B = 5718.867574 C = 6172.413256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.159 3.841 3 N -0.699 5.699 4 C 0.595 3.405 5 O -0.519 6.519 6 C -0.257 4.257 7 C -0.117 4.117 8 C 0.057 3.943 9 N -0.524 5.524 10 S 0.419 5.581 11 C -0.146 4.146 12 C 0.152 3.848 13 N -0.604 5.604 14 C -0.218 4.218 15 H 0.077 0.923 16 C -0.012 4.012 17 N -0.925 5.925 18 Si 0.914 3.086 19 H -0.290 1.290 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.136 3.864 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.051 0.949 26 H 0.396 0.604 27 H 0.175 0.825 28 H 0.182 0.818 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.011 0.989 33 H 0.251 0.749 34 H 0.032 0.968 35 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.710 13.849 2.194 16.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.073 3.927 3 N -0.350 5.350 4 C 0.379 3.621 5 O -0.396 6.396 6 C -0.391 4.391 7 C -0.152 4.152 8 C -0.135 4.135 9 N -0.354 5.354 10 S 0.573 5.427 11 C -0.185 4.185 12 C 0.027 3.973 13 N -0.330 5.330 14 C -0.346 4.346 15 H 0.095 0.905 16 C -0.207 4.207 17 N -0.574 5.574 18 Si 0.745 3.255 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.207 1.207 22 C 0.009 3.991 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.230 0.770 27 H 0.192 0.808 28 H 0.199 0.801 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.127 0.873 32 H 0.029 0.971 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.828 13.827 3.334 15.777 hybrid contribution 0.027 -0.261 -1.914 1.932 sum -6.801 13.565 1.421 15.241 Atomic orbital electron populations 1.22046 0.93982 1.02539 1.02302 1.21441 0.93121 0.79586 0.98517 1.45877 1.53426 1.12982 1.22667 1.16664 0.80252 0.82327 0.82818 1.90795 1.38369 1.75615 1.34779 1.27042 1.08686 1.00252 1.03133 1.22112 1.01151 0.90853 1.01096 1.22274 0.96969 1.00162 0.94111 1.72213 1.25525 1.23473 1.14153 1.81729 1.39897 0.97974 1.23136 1.23378 1.01344 0.98877 0.94940 1.21959 0.89317 1.00741 0.85317 1.44499 1.30517 1.50540 1.07436 1.19097 1.05974 1.16623 0.92954 0.90527 1.24751 0.98744 1.00742 0.96452 1.69764 1.30017 1.46636 1.10957 0.86074 0.80244 0.80239 0.78985 1.21719 1.21651 1.20683 1.21607 0.90420 0.93216 0.93817 0.91002 0.91438 0.92979 0.76970 0.80768 0.80100 0.91767 0.90238 0.87303 0.97123 0.93782 0.94968 0.94754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.45 37.16 0.31 -1.95 16 2 C 0.16 2.76 0.81 -129.98 -0.11 2.65 16 3 N -0.70 -10.92 5.14 -47.07 -0.24 -11.16 16 4 C 0.60 9.60 7.03 -12.66 -0.09 9.51 16 5 O -0.52 -9.77 13.88 5.25 0.07 -9.70 16 6 C -0.26 -3.42 6.76 -35.93 -0.24 -3.66 16 7 C -0.12 -1.32 10.40 -39.77 -0.41 -1.74 16 8 C 0.06 0.59 11.14 -18.75 -0.21 0.38 16 9 N -0.52 -6.31 11.29 21.63 0.24 -6.07 16 10 S 0.42 4.76 22.81 -107.50 -2.45 2.31 16 11 C -0.15 -2.56 6.09 -24.58 -0.15 -2.71 16 12 C 0.15 3.52 5.87 -2.53 -0.01 3.50 16 13 N -0.60 -15.45 3.39 -170.07 -0.58 -16.03 16 14 C -0.22 -6.14 10.27 -15.06 -0.15 -6.29 16 15 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 16 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 17 N -0.92 -26.55 10.09 55.49 0.56 -25.99 16 18 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 22 C 0.14 2.99 6.13 -3.07 -0.02 2.97 16 23 H 0.07 1.16 6.36 -51.93 -0.33 0.83 16 24 H 0.07 0.97 8.12 -51.93 -0.42 0.55 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.40 5.33 7.85 -40.82 -0.32 5.01 16 27 H 0.18 1.72 8.06 -52.49 -0.42 1.30 16 28 H 0.18 1.24 8.06 -52.48 -0.42 0.82 16 29 H 0.06 0.93 8.04 -51.93 -0.42 0.51 16 30 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16 31 H 0.11 2.86 5.87 -51.93 -0.30 2.55 16 32 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.03 0.72 7.80 -51.93 -0.41 0.31 16 35 H 0.03 0.82 6.48 -51.93 -0.34 0.48 16 LS Contribution 303.04 15.07 4.57 4.57 Total: -1.00 -32.24 303.04 -8.22 -40.46 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -4.19 Total: 2.21 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -1.18 Total: 2.23 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: -0.02 Total: -59.25 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.07 Total: -9.70 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 16 Polarization: 4.76 SS G_CDS: -2.45 Total: 2.31 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.24 -8.22 -40.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046357639.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.811 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds