Wall clock time and date at job start Tue Mar 31 2020 05:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46493 * 110.88729 * 2 1 4 4 C 1.34780 * 120.00081 * 59.29800 * 3 2 1 5 5 O 1.21628 * 120.00062 * 0.02562 * 4 3 2 6 6 C 1.47100 * 119.99921 * 179.97438 * 4 3 2 7 7 C 1.38392 * 127.99773 * 180.02562 * 6 4 3 8 8 C 1.37576 * 111.26132 * 180.30345 * 7 6 4 9 9 N 1.29557 * 117.94914 * 359.47447 * 8 7 6 10 10 S 1.56304 * 110.38366 * 0.51542 * 9 8 7 11 11 C 1.55160 * 111.00121 * 236.11688 * 2 1 3 12 12 C 1.54426 * 102.89045 * 206.40778 * 11 2 1 13 13 N 1.47019 * 107.28514 * 22.18756 * 12 11 2 14 14 C 1.36936 * 125.64964 * 181.02398 * 13 12 11 15 15 H 1.08002 * 119.99796 * 173.94216 * 14 13 12 16 16 C 1.38816 * 120.00218 * 353.94389 * 14 13 12 17 17 N 1.31623 * 119.99624 * 6.82666 * 16 14 13 18 18 Si 1.86801 * 120.00085 * 186.83083 * 16 14 13 19 19 H 1.48496 * 109.47193 * 94.98414 * 18 16 14 20 20 H 1.48501 * 109.46683 * 214.98369 * 18 16 14 21 21 H 1.48500 * 109.47099 * 334.98171 * 18 16 14 22 22 C 1.47425 * 108.70018 * 1.06079 * 13 12 11 23 23 H 1.08995 * 109.47253 * 60.70093 * 1 2 3 24 24 H 1.08999 * 109.47368 * 180.70230 * 1 2 3 25 25 H 1.09001 * 109.47330 * 300.69935 * 1 2 3 26 26 H 0.97002 * 119.99753 * 239.30308 * 3 2 1 27 27 H 1.07991 * 124.36335 * 0.03871 * 7 6 4 28 28 H 1.07997 * 121.02471 * 179.73848 * 8 7 6 29 29 H 1.08998 * 110.72400 * 324.74654 * 11 2 1 30 30 H 1.08999 * 110.71797 * 88.02655 * 11 2 1 31 31 H 1.08999 * 109.87991 * 262.76584 * 12 11 2 32 32 H 1.09007 * 109.87824 * 141.61275 * 12 11 2 33 33 H 0.96998 * 119.99892 * 179.97438 * 17 16 14 34 34 H 1.09005 * 110.36650 * 217.02969 * 22 13 12 35 35 H 1.09002 * 110.45890 * 94.75722 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7357 2.2108 1.0036 5 8 1.0168 1.8342 1.9096 6 6 2.2607 3.5849 1.0039 7 6 2.0447 4.5793 1.9419 8 6 2.6983 5.7400 1.5979 9 7 3.3984 5.7425 0.5079 10 16 3.3142 4.3496 -0.1965 11 6 2.0860 -0.8076 -1.2025 12 6 3.4682 -1.2733 -0.6951 13 7 3.4274 -1.2420 0.7741 14 6 4.4642 -1.5650 1.6084 15 1 4.3664 -1.4167 2.6737 16 6 5.6409 -2.0830 1.0849 17 7 5.8126 -2.1386 -0.2189 18 14 6.9805 -2.7011 2.2307 19 1 6.8346 -4.1670 2.4175 20 1 8.3111 -2.4073 1.6404 21 1 6.8607 -2.0202 3.5449 22 6 2.0852 -0.8062 1.2006 23 1 -0.3633 0.5029 -0.8962 24 1 -0.3634 -1.0276 0.0126 25 1 -0.3634 0.5247 0.8836 26 1 2.6258 1.6689 -0.7224 27 1 1.4377 4.4607 2.8271 28 1 2.6333 6.6206 2.2197 29 1 1.4471 -1.6631 -1.4211 30 1 2.1915 -0.1694 -2.0799 31 1 4.2432 -0.5986 -1.0589 32 1 3.6665 -2.2885 -1.0390 33 1 6.6350 -2.5002 -0.5848 34 1 2.1553 -0.1714 2.0839 35 1 1.4511 -1.6692 1.4039 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046357640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:33 Heat of formation + Delta-G solvation = 39.318387 kcal Electronic energy + Delta-G solvation = -20095.050011 eV Core-core repulsion = 17027.893119 eV Total energy + Delta-G solvation = -3067.156892 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.03206 -39.07817 -37.23468 -34.00741 -32.27826 -31.29341 -29.96725 -28.70693 -26.11450 -25.66381 -23.74773 -22.42206 -20.44185 -19.85642 -19.35258 -18.38799 -17.15880 -16.58990 -15.58304 -15.14661 -15.09541 -14.65080 -14.24036 -13.89439 -13.69908 -13.43030 -13.20486 -12.82297 -12.11439 -11.98706 -11.83901 -11.71236 -11.37525 -10.94150 -10.88628 -10.83134 -10.46448 -10.40262 -10.09706 -10.05213 -9.72792 -9.66474 -9.51235 -8.92751 -8.72900 -8.56006 -6.80676 -5.72929 -3.03825 0.27557 1.23873 1.80751 2.16934 3.19576 3.34468 3.40721 3.46519 3.47883 4.50512 4.67414 4.89972 4.99342 5.15183 5.34614 5.43798 5.56723 5.59513 5.69876 5.74300 5.96015 6.07762 6.12432 6.30897 6.36072 6.39099 6.48554 6.62643 6.77629 7.03148 7.50276 7.56903 7.71881 7.80342 8.25104 8.35844 9.22528 9.82607 10.48751 11.39606 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.016723 B = 0.005803 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.952771 B = 4823.534407 C = 5624.167811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.156 3.844 3 N -0.692 5.692 4 C 0.597 3.403 5 O -0.523 6.523 6 C -0.256 4.256 7 C -0.118 4.118 8 C 0.056 3.944 9 N -0.525 5.525 10 S 0.421 5.579 11 C -0.147 4.147 12 C 0.175 3.825 13 N -0.603 5.603 14 C -0.223 4.223 15 H 0.076 0.924 16 C -0.008 4.008 17 N -0.922 5.922 18 Si 0.909 3.091 19 H -0.289 1.289 20 H -0.292 1.292 21 H -0.281 1.281 22 C 0.132 3.868 23 H 0.051 0.949 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.397 0.603 27 H 0.174 0.826 28 H 0.182 0.818 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.042 0.958 32 H 0.048 0.952 33 H 0.252 0.748 34 H 0.052 0.948 35 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.081 11.856 -2.340 15.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.070 3.930 3 N -0.342 5.342 4 C 0.381 3.619 5 O -0.400 6.400 6 C -0.390 4.390 7 C -0.153 4.153 8 C -0.136 4.136 9 N -0.355 5.355 10 S 0.576 5.424 11 C -0.185 4.185 12 C 0.051 3.949 13 N -0.329 5.329 14 C -0.352 4.352 15 H 0.094 0.906 16 C -0.204 4.204 17 N -0.570 5.570 18 Si 0.739 3.261 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.207 1.207 22 C 0.005 3.995 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.231 0.769 27 H 0.192 0.808 28 H 0.198 0.802 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -8.096 11.880 -3.463 14.787 hybrid contribution 0.190 -0.148 1.857 1.873 sum -7.907 11.732 -1.606 14.238 Atomic orbital electron populations 1.22016 0.93999 1.02432 1.02531 1.21577 0.92810 0.80011 0.98649 1.45697 1.51086 1.12555 1.24874 1.16632 0.80524 0.82269 0.82447 1.90767 1.37365 1.76343 1.35536 1.27032 1.08152 1.00248 1.03559 1.22093 1.01436 0.90809 1.00997 1.22257 0.96481 1.00311 0.94541 1.72200 1.25478 1.23094 1.14732 1.81766 1.37695 0.98064 1.24907 1.23264 1.00578 0.98945 0.95750 1.21206 0.89878 1.00105 0.83744 1.44435 1.07517 1.79190 1.01757 1.19058 0.91933 1.34719 0.89469 0.90579 1.24781 0.98143 1.01437 0.96003 1.69954 1.26388 1.51210 1.09436 0.86141 0.81275 0.78911 0.79752 1.21612 1.21817 1.20696 1.21883 0.87698 0.94983 0.94924 0.93021 0.91588 0.90695 0.76890 0.80833 0.80171 0.90561 0.91622 0.93947 0.93378 0.93818 0.92952 0.95378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.57 37.16 0.32 -1.90 16 2 C 0.16 2.68 0.82 -129.68 -0.11 2.57 16 3 N -0.69 -11.16 5.17 -46.79 -0.24 -11.40 16 4 C 0.60 9.91 7.18 -12.66 -0.09 9.81 16 5 O -0.52 -9.93 13.77 5.25 0.07 -9.86 16 6 C -0.26 -3.57 6.77 -35.93 -0.24 -3.82 16 7 C -0.12 -1.41 10.40 -39.77 -0.41 -1.82 16 8 C 0.06 0.61 11.14 -18.75 -0.21 0.40 16 9 N -0.53 -6.70 11.29 21.64 0.24 -6.45 16 10 S 0.42 5.16 22.81 -107.50 -2.45 2.70 16 11 C -0.15 -2.51 5.99 -24.84 -0.15 -2.65 16 12 C 0.18 4.04 5.37 -3.01 -0.02 4.02 16 13 N -0.60 -15.19 3.39 -170.00 -0.58 -15.76 16 14 C -0.22 -6.26 10.26 -15.06 -0.15 -6.42 16 15 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 16 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 17 N -0.92 -26.62 10.36 55.49 0.58 -26.05 16 18 Si 0.91 22.26 29.56 -169.99 -5.02 17.23 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C 0.13 2.84 6.13 -2.53 -0.02 2.82 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 25 H 0.07 1.20 6.22 -51.93 -0.32 0.87 16 26 H 0.40 5.72 7.88 -40.82 -0.32 5.40 16 27 H 0.17 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.18 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 30 H 0.07 0.95 8.07 -51.93 -0.42 0.54 16 31 H 0.04 1.06 7.55 -51.93 -0.39 0.67 16 32 H 0.05 1.24 7.37 -51.93 -0.38 0.86 16 33 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.05 1.21 6.58 -51.93 -0.34 0.87 16 35 H 0.03 0.60 8.03 -51.93 -0.42 0.19 16 LS Contribution 304.06 15.07 4.58 4.58 Total: -1.00 -32.22 304.06 -8.25 -40.47 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -4.25 Total: 1.81 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -1.18 Total: 2.72 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: 0.00 Total: -59.66 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.07 Total: -9.86 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: 5.16 SS G_CDS: -2.45 Total: 2.70 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.22 -8.25 -40.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046357640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.791 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds