Wall clock time and date at job start Tue Mar 31 2020 05:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46493 * 110.88729 * 2 1 4 4 C 1.34780 * 120.00081 * 59.29800 * 3 2 1 5 5 O 1.21628 * 120.00062 * 0.02562 * 4 3 2 6 6 C 1.47100 * 119.99921 * 179.97438 * 4 3 2 7 7 C 1.38392 * 127.99773 * 180.02562 * 6 4 3 8 8 C 1.37576 * 111.26132 * 180.30345 * 7 6 4 9 9 N 1.29557 * 117.94914 * 359.47447 * 8 7 6 10 10 S 1.56304 * 110.38366 * 0.51542 * 9 8 7 11 11 C 1.55160 * 111.00121 * 236.11688 * 2 1 3 12 12 C 1.54426 * 102.89045 * 206.40778 * 11 2 1 13 13 N 1.47019 * 107.28514 * 22.18756 * 12 11 2 14 14 C 1.36936 * 125.64964 * 181.02398 * 13 12 11 15 15 H 1.08002 * 119.99796 * 173.94216 * 14 13 12 16 16 C 1.38816 * 120.00218 * 353.94389 * 14 13 12 17 17 N 1.31623 * 119.99624 * 6.82666 * 16 14 13 18 18 Si 1.86801 * 120.00085 * 186.83083 * 16 14 13 19 19 H 1.48496 * 109.47193 * 94.98414 * 18 16 14 20 20 H 1.48501 * 109.46683 * 214.98369 * 18 16 14 21 21 H 1.48500 * 109.47099 * 334.98171 * 18 16 14 22 22 C 1.47425 * 108.70018 * 1.06079 * 13 12 11 23 23 H 1.08995 * 109.47253 * 60.70093 * 1 2 3 24 24 H 1.08999 * 109.47368 * 180.70230 * 1 2 3 25 25 H 1.09001 * 109.47330 * 300.69935 * 1 2 3 26 26 H 0.97002 * 119.99753 * 239.30308 * 3 2 1 27 27 H 1.07991 * 124.36335 * 0.03871 * 7 6 4 28 28 H 1.07997 * 121.02471 * 179.73848 * 8 7 6 29 29 H 1.08998 * 110.72400 * 324.74654 * 11 2 1 30 30 H 1.08999 * 110.71797 * 88.02655 * 11 2 1 31 31 H 1.08999 * 109.87991 * 262.76584 * 12 11 2 32 32 H 1.09007 * 109.87824 * 141.61275 * 12 11 2 33 33 H 0.96998 * 119.99892 * 179.97438 * 17 16 14 34 34 H 1.09005 * 110.36650 * 217.02969 * 22 13 12 35 35 H 1.09002 * 110.45890 * 94.75722 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.7357 2.2108 1.0036 5 8 1.0168 1.8342 1.9096 6 6 2.2607 3.5849 1.0039 7 6 2.0447 4.5793 1.9419 8 6 2.6983 5.7400 1.5979 9 7 3.3984 5.7425 0.5079 10 16 3.3142 4.3496 -0.1965 11 6 2.0860 -0.8076 -1.2025 12 6 3.4682 -1.2733 -0.6951 13 7 3.4274 -1.2420 0.7741 14 6 4.4642 -1.5650 1.6084 15 1 4.3664 -1.4167 2.6737 16 6 5.6409 -2.0830 1.0849 17 7 5.8126 -2.1386 -0.2189 18 14 6.9805 -2.7011 2.2307 19 1 6.8346 -4.1670 2.4175 20 1 8.3111 -2.4073 1.6404 21 1 6.8607 -2.0202 3.5449 22 6 2.0852 -0.8062 1.2006 23 1 -0.3633 0.5029 -0.8962 24 1 -0.3634 -1.0276 0.0126 25 1 -0.3634 0.5247 0.8836 26 1 2.6258 1.6689 -0.7224 27 1 1.4377 4.4607 2.8271 28 1 2.6333 6.6206 2.2197 29 1 1.4471 -1.6631 -1.4211 30 1 2.1915 -0.1694 -2.0799 31 1 4.2432 -0.5986 -1.0589 32 1 3.6665 -2.2885 -1.0390 33 1 6.6350 -2.5002 -0.5848 34 1 2.1553 -0.1714 2.0839 35 1 1.4511 -1.6692 1.4039 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046357640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:32 Heat of formation + Delta-G solvation = 16.882345 kcal Electronic energy + Delta-G solvation = -20096.022911 eV Core-core repulsion = 17027.893119 eV Total energy + Delta-G solvation = -3068.129792 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.33981 -40.11919 -38.75333 -35.70676 -33.84772 -32.61455 -31.50495 -30.32404 -27.52152 -27.10762 -25.41498 -23.61177 -22.16088 -21.05494 -20.72233 -19.55726 -18.87110 -17.87766 -17.07478 -16.64099 -16.32963 -16.27661 -15.65324 -15.35850 -15.14766 -14.72593 -14.29875 -14.14236 -13.87678 -13.54043 -13.41581 -13.11891 -12.87460 -12.74845 -12.42069 -12.10941 -12.04493 -11.96423 -11.75948 -11.70253 -11.57474 -10.88374 -10.76242 -10.68824 -10.10242 -9.82374 -8.85186 -7.87221 -5.19449 -0.74086 0.25299 0.87600 1.23956 1.43739 1.45114 1.53655 1.96757 2.13624 2.47993 3.31222 3.49563 3.66862 3.76522 4.02290 4.04107 4.11523 4.18559 4.64710 4.68406 4.73462 4.77201 4.88336 4.88715 4.94064 5.04339 5.08889 5.37386 5.43700 5.49116 5.58567 5.68891 5.77030 6.20437 6.45998 7.09380 7.12126 7.77625 8.42101 9.23188 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.016723 B = 0.005803 C = 0.004977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.952771 B = 4823.534407 C = 5624.167811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.165 3.835 3 N -0.693 5.693 4 C 0.596 3.404 5 O -0.553 6.553 6 C -0.288 4.288 7 C -0.107 4.107 8 C 0.064 3.936 9 N -0.541 5.541 10 S 0.435 5.565 11 C -0.129 4.129 12 C 0.182 3.818 13 N -0.621 5.621 14 C -0.242 4.242 15 H 0.068 0.932 16 C -0.057 4.057 17 N -0.943 5.943 18 Si 0.970 3.030 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.275 1.275 22 C 0.128 3.872 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.405 0.595 27 H 0.188 0.812 28 H 0.219 0.781 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.015 0.985 32 H 0.013 0.987 33 H 0.248 0.752 34 H 0.029 0.971 35 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.882 13.128 -2.555 16.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.079 3.921 3 N -0.343 5.343 4 C 0.382 3.618 5 O -0.433 6.433 6 C -0.421 4.421 7 C -0.143 4.143 8 C -0.128 4.128 9 N -0.371 5.371 10 S 0.591 5.409 11 C -0.167 4.167 12 C 0.057 3.943 13 N -0.347 5.347 14 C -0.371 4.371 15 H 0.086 0.914 16 C -0.250 4.250 17 N -0.592 5.592 18 Si 0.799 3.201 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.200 1.200 22 C 0.002 3.998 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.079 0.921 26 H 0.240 0.760 27 H 0.205 0.795 28 H 0.235 0.765 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.033 0.967 32 H 0.032 0.968 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -8.909 13.165 -3.701 16.321 hybrid contribution 0.447 -0.486 1.986 2.093 sum -8.462 12.679 -1.715 15.339 Atomic orbital electron populations 1.21947 0.91421 1.03470 1.03173 1.21467 0.94479 0.80036 0.96156 1.45695 1.51229 1.12100 1.25254 1.16939 0.79926 0.83148 0.81821 1.90745 1.38796 1.77253 1.36514 1.26900 1.10061 0.99591 1.05578 1.22411 1.00698 0.90475 1.00736 1.22716 0.94956 1.01027 0.94070 1.72258 1.26102 1.23185 1.15592 1.81672 1.37160 0.97758 1.24357 1.23148 0.96883 1.00126 0.96541 1.21005 0.92886 0.97662 0.82716 1.44674 1.08264 1.79138 1.02604 1.19297 0.93156 1.34868 0.89750 0.91398 1.25511 1.00182 1.01889 0.97462 1.70142 1.26627 1.51710 1.10679 0.85187 0.78518 0.78221 0.78194 1.21310 1.21753 1.20024 1.22001 0.86378 0.95234 0.96165 0.90350 0.90321 0.92095 0.75962 0.79502 0.76518 0.88561 0.88280 0.96693 0.96838 0.94254 0.95232 0.95219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 8.57 71.98 0.62 -3.21 16 2 C 0.17 5.47 0.82 5.00 0.00 5.48 16 3 N -0.69 -21.72 5.17 -420.19 -2.17 -23.89 16 4 C 0.60 19.48 7.18 86.57 0.62 20.10 16 5 O -0.55 -21.01 13.77 -4.12 -0.06 -21.07 16 6 C -0.29 -7.74 6.77 24.63 0.17 -7.57 16 7 C -0.11 -2.35 10.40 22.15 0.23 -2.12 16 8 C 0.06 1.23 11.14 84.87 0.95 2.17 16 9 N -0.54 -12.69 11.29 -85.46 -0.96 -13.65 16 10 S 0.44 10.12 22.81 -56.49 -1.29 8.83 16 11 C -0.13 -4.16 5.99 31.82 0.19 -3.97 16 12 C 0.18 8.50 5.37 86.77 0.47 8.96 16 13 N -0.62 -31.92 3.39 -691.77 -2.35 -34.27 16 14 C -0.24 -13.87 10.26 84.03 0.86 -13.01 16 15 H 0.07 3.89 7.84 -2.91 -0.02 3.87 16 16 C -0.06 -3.25 5.48 84.86 0.47 -2.78 16 17 N -0.94 -55.65 10.36 21.65 0.22 -55.42 16 18 Si 0.97 46.36 29.56 68.60 2.03 48.39 16 19 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 20 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 22 C 0.13 5.56 6.13 86.85 0.53 6.10 16 23 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.08 1.92 8.13 -2.39 -0.02 1.90 16 25 H 0.06 1.86 6.22 -2.39 -0.01 1.84 16 26 H 0.40 11.25 7.88 -92.71 -0.73 10.52 16 27 H 0.19 3.52 8.06 -2.92 -0.02 3.49 16 28 H 0.22 2.38 8.06 -2.91 -0.02 2.36 16 29 H 0.10 2.78 8.04 -2.39 -0.02 2.76 16 30 H 0.10 2.58 8.07 -2.39 -0.02 2.56 16 31 H 0.01 0.76 7.55 -2.39 -0.02 0.75 16 32 H 0.01 0.71 7.37 -2.38 -0.02 0.69 16 33 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 34 H 0.03 1.40 6.58 -2.38 -0.02 1.39 16 35 H 0.03 1.28 8.03 -2.39 -0.02 1.26 16 Total: -1.00 -71.18 304.06 0.91 -70.27 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: 0.39 Total: 10.66 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 5.10 Total: 10.15 kcal Atomic # 7 Polarization: -121.98 SS G_CDS: -5.26 Total: -127.24 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.06 Total: -21.07 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Atomic # 16 Polarization: 10.12 SS G_CDS: -1.29 Total: 8.83 kcal Total: -71.18 0.91 -70.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046357640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.154 kcal (2) G-P(sol) polarization free energy of solvation -71.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds