Wall clock time and date at job start Tue Mar 31 2020 05:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99910 * 2 1 4 4 H 1.48502 * 109.46974 * 269.99545 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99978 * 3 2 1 6 6 H 1.48498 * 109.46819 * 149.99960 * 3 2 1 7 7 C 1.37877 * 119.99892 * 179.97438 * 2 1 3 8 8 C 1.51268 * 120.85152 * 0.02562 * 7 2 1 9 9 C 1.53236 * 108.53762 * 231.34986 * 8 7 2 10 10 C 1.52963 * 109.40035 * 305.37197 * 9 8 7 11 11 H 1.08995 * 109.41079 * 303.48687 * 10 9 8 12 12 N 1.46502 * 109.34894 * 183.66992 * 10 9 8 13 13 C 1.34771 * 119.99998 * 84.68562 * 12 10 9 14 14 O 1.21586 * 120.00526 * 359.97438 * 13 12 10 15 15 N 1.34784 * 119.99940 * 179.97438 * 13 12 10 16 16 C 1.39002 * 119.99646 * 179.97438 * 15 13 12 17 17 N 1.29620 * 124.95333 * 359.70310 * 16 15 13 18 18 C 1.32019 * 116.91159 * 179.77399 * 17 16 15 19 19 C 1.33410 * 114.57109 * 0.50987 * 18 17 16 20 20 S 1.70974 * 124.94213 * 179.97438 * 16 15 13 21 21 C 1.52953 * 109.81780 * 63.60102 * 10 9 8 22 22 C 1.51297 * 120.84322 * 180.02562 * 7 2 1 23 23 H 0.97001 * 120.00351 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.62788 * 111.63015 * 8 7 2 25 25 H 1.09004 * 109.62655 * 351.05755 * 8 7 2 26 26 H 1.08994 * 109.48064 * 185.39115 * 9 8 7 27 27 H 1.08995 * 109.48126 * 65.34933 * 9 8 7 28 28 H 0.97003 * 120.00034 * 264.67630 * 12 10 9 29 29 H 0.96997 * 119.99955 * 0.02562 * 15 13 12 30 30 H 1.08005 * 122.71340 * 180.22342 * 18 17 16 31 31 H 1.07996 * 125.96475 * 179.75938 * 19 18 17 32 32 H 1.09002 * 109.48451 * 56.37994 * 21 10 9 33 33 H 1.08999 * 109.48225 * 176.40883 * 21 10 9 34 34 H 1.08998 * 109.64332 * 8.94838 * 22 7 2 35 35 H 1.08992 * 109.62506 * 248.36149 * 22 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 6 1.2677 -2.5152 0.0005 9 6 1.8224 -3.3824 1.1356 10 6 3.3395 -3.5068 0.9850 11 1 3.5738 -3.9123 0.0008 12 7 3.8577 -4.4067 2.0185 13 6 3.8507 -5.7392 1.8169 14 8 3.4139 -6.1947 0.7776 15 7 4.3279 -6.5671 2.7675 16 6 4.3202 -7.9415 2.5598 17 7 3.8733 -8.5289 1.4943 18 6 3.9472 -9.8467 1.4629 19 6 4.4720 -10.3991 2.5580 20 16 4.8928 -9.1037 3.6754 21 6 3.9902 -2.1308 1.1362 22 6 3.5173 -1.2164 0.0011 23 1 -0.4851 0.8400 -0.0004 24 1 1.4202 -3.0195 -0.9536 25 1 0.2035 -2.3409 0.1597 26 1 1.3701 -4.3730 1.0905 27 1 1.5890 -2.9192 2.0942 28 1 4.2060 -4.0434 2.8477 29 1 4.6760 -6.2038 3.5968 30 1 3.6059 -10.4306 0.6208 31 1 4.6147 -11.4558 2.7293 32 1 3.7055 -1.6973 2.0949 33 1 5.0743 -2.2345 1.0917 34 1 3.8986 -0.2078 0.1607 35 1 3.8781 -1.6005 -0.9529 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189397583.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:50 Heat of formation + Delta-G solvation = 19.916229 kcal Electronic energy + Delta-G solvation = -19462.206005 eV Core-core repulsion = 16394.207772 eV Total energy + Delta-G solvation = -3067.998233 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.54040 -39.11742 -36.97542 -34.74728 -33.72577 -31.58262 -29.67310 -29.45421 -27.31766 -25.07689 -22.65990 -21.73954 -21.36576 -19.80498 -19.50250 -19.23427 -17.58133 -16.52498 -16.05360 -15.63456 -15.27873 -14.69777 -14.46120 -14.16670 -14.09535 -13.31012 -13.14590 -12.86733 -12.28936 -12.09656 -11.70350 -11.60583 -11.13010 -10.97337 -10.75989 -10.72343 -10.37858 -10.14923 -9.91085 -9.50709 -9.44303 -9.35165 -9.09702 -8.82612 -8.49245 -8.43063 -8.19708 -6.09183 -4.00854 0.68870 0.82019 1.52688 2.61460 2.80670 3.26324 3.33485 3.34868 3.49678 4.02007 4.37082 4.70530 5.10483 5.17116 5.39907 5.61409 5.79186 5.86964 6.15186 6.16127 6.44265 6.48902 6.54644 6.70660 6.77096 6.89034 7.02272 7.10881 7.26847 7.39484 7.64723 7.71080 7.79430 7.87819 8.11569 8.40021 8.72582 8.97827 9.54129 11.00247 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.049101 B = 0.003422 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.115264 B = 8179.902611 C = 8437.716269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.075 3.925 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.489 4.489 8 C 0.012 3.988 9 C -0.115 4.115 10 C 0.172 3.828 11 H 0.080 0.920 12 N -0.732 5.732 13 C 0.692 3.308 14 O -0.525 6.525 15 N -0.648 5.648 16 C 0.304 3.696 17 N -0.478 5.478 18 C 0.075 3.925 19 C -0.286 4.286 20 S 0.099 5.901 21 C -0.112 4.112 22 C -0.018 4.018 23 H 0.264 0.736 24 H 0.007 0.993 25 H 0.058 0.942 26 H 0.036 0.964 27 H 0.048 0.952 28 H 0.390 0.610 29 H 0.415 0.585 30 H 0.178 0.822 31 H 0.178 0.822 32 H 0.056 0.944 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.144 -15.190 10.152 21.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.190 1.190 7 C -0.508 4.508 8 C -0.026 4.026 9 C -0.154 4.154 10 C 0.069 3.931 11 H 0.098 0.902 12 N -0.386 5.386 13 C 0.389 3.611 14 O -0.395 6.395 15 N -0.301 5.301 16 C -0.067 4.067 17 N -0.199 5.199 18 C -0.076 4.076 19 C -0.426 4.426 20 S 0.347 5.653 21 C -0.150 4.150 22 C -0.056 4.056 23 H 0.074 0.926 24 H 0.025 0.975 25 H 0.077 0.923 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.223 0.777 29 H 0.252 0.748 30 H 0.195 0.805 31 H 0.195 0.805 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 10.752 -14.972 9.682 20.821 hybrid contribution 0.442 0.729 0.252 0.889 sum 11.194 -14.243 9.934 20.660 Atomic orbital electron populations 1.69844 1.06167 1.26889 1.49758 1.24862 0.94717 0.98536 0.94609 0.86682 0.79885 0.83351 0.78526 1.20399 1.21690 1.18985 1.20067 0.89255 0.91606 1.49836 1.19353 0.98649 0.92593 0.92023 1.21990 0.93286 0.98629 1.01505 1.21033 0.94746 0.87817 0.89523 0.90187 1.45678 1.67017 1.03575 1.22328 1.16077 0.79751 0.81690 0.83547 1.91065 1.48655 1.74767 1.24972 1.42368 1.65093 1.01314 1.21366 1.23490 0.99577 0.89760 0.93826 1.66613 1.21546 1.09215 1.22529 1.21733 0.98646 0.88528 0.98697 1.26722 1.14503 1.03211 0.98191 1.83861 1.62183 0.97886 1.21348 1.21863 0.96829 0.94592 1.01751 1.19787 0.96904 0.95350 0.93514 0.92590 0.97495 0.92333 0.94570 0.93280 0.77723 0.74800 0.80496 0.80475 0.92502 0.94364 0.94317 0.96141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.60 12.73 55.43 0.71 -24.89 16 2 C 0.08 2.04 5.46 -17.82 -0.10 1.95 16 3 Si 0.89 20.65 27.53 -169.99 -4.68 15.97 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.26 -5.84 6.10 56.52 0.34 -5.50 16 7 C -0.49 -12.76 5.51 -98.91 -0.55 -13.31 16 8 C 0.01 0.30 5.97 -27.48 -0.16 0.14 16 9 C -0.12 -2.55 5.50 -26.63 -0.15 -2.69 16 10 C 0.17 3.34 2.35 -67.97 -0.16 3.19 16 11 H 0.08 1.75 7.58 -51.93 -0.39 1.36 16 12 N -0.73 -11.38 5.08 -58.72 -0.30 -11.67 16 13 C 0.69 11.75 8.49 -86.92 -0.74 11.01 16 14 O -0.52 -11.50 14.64 5.29 0.08 -11.43 16 15 N -0.65 -8.21 5.41 -17.47 -0.09 -8.31 16 16 C 0.30 4.09 8.02 -87.35 -0.70 3.39 16 17 N -0.48 -7.64 8.65 -15.12 -0.13 -7.77 16 18 C 0.08 0.89 11.34 -19.16 -0.22 0.67 16 19 C -0.29 -2.61 11.35 29.04 0.33 -2.28 16 20 S 0.10 0.91 23.22 -107.50 -2.50 -1.59 16 21 C -0.11 -2.12 5.40 -26.63 -0.14 -2.27 16 22 C -0.02 -0.39 5.59 -27.47 -0.15 -0.55 16 23 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 25 H 0.06 1.64 7.07 -51.93 -0.37 1.27 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.39 4.57 8.61 -40.82 -0.35 4.22 16 29 H 0.42 3.39 8.83 -40.82 -0.36 3.03 16 30 H 0.18 1.66 8.06 -52.48 -0.42 1.24 16 31 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.04 0.86 4.60 -51.93 -0.24 0.62 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 302.52 15.07 4.56 4.56 Total: -1.00 -33.55 302.52 -9.38 -42.93 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.29 Total: 2.95 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -2.74 Total: -0.75 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.18 Total: -52.64 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.08 Total: -11.43 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.68 Total: 15.97 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.50 Total: -1.59 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.55 -9.38 -42.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189397583.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.842 kcal (2) G-P(sol) polarization free energy of solvation -33.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds