Wall clock time and date at job start Tue Mar 31 2020 05:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99910 * 2 1 4 4 H 1.48502 * 109.46974 * 269.99545 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99978 * 3 2 1 6 6 H 1.48498 * 109.46819 * 149.99960 * 3 2 1 7 7 C 1.37877 * 119.99892 * 179.97438 * 2 1 3 8 8 C 1.51268 * 120.85152 * 0.02562 * 7 2 1 9 9 C 1.53236 * 108.53762 * 231.34986 * 8 7 2 10 10 C 1.52963 * 109.40035 * 305.37197 * 9 8 7 11 11 H 1.08995 * 109.41079 * 303.48687 * 10 9 8 12 12 N 1.46502 * 109.34894 * 183.66992 * 10 9 8 13 13 C 1.34771 * 119.99998 * 84.68562 * 12 10 9 14 14 O 1.21586 * 120.00526 * 359.97438 * 13 12 10 15 15 N 1.34784 * 119.99940 * 179.97438 * 13 12 10 16 16 C 1.39002 * 119.99646 * 179.97438 * 15 13 12 17 17 N 1.29620 * 124.95333 * 359.70310 * 16 15 13 18 18 C 1.32019 * 116.91159 * 179.77399 * 17 16 15 19 19 C 1.33410 * 114.57109 * 0.50987 * 18 17 16 20 20 S 1.70974 * 124.94213 * 179.97438 * 16 15 13 21 21 C 1.52953 * 109.81780 * 63.60102 * 10 9 8 22 22 C 1.51297 * 120.84322 * 180.02562 * 7 2 1 23 23 H 0.97001 * 120.00351 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.62788 * 111.63015 * 8 7 2 25 25 H 1.09004 * 109.62655 * 351.05755 * 8 7 2 26 26 H 1.08994 * 109.48064 * 185.39115 * 9 8 7 27 27 H 1.08995 * 109.48126 * 65.34933 * 9 8 7 28 28 H 0.97003 * 120.00034 * 264.67630 * 12 10 9 29 29 H 0.96997 * 119.99955 * 0.02562 * 15 13 12 30 30 H 1.08005 * 122.71340 * 180.22342 * 18 17 16 31 31 H 1.07996 * 125.96475 * 179.75938 * 19 18 17 32 32 H 1.09002 * 109.48451 * 56.37994 * 21 10 9 33 33 H 1.08999 * 109.48225 * 176.40883 * 21 10 9 34 34 H 1.08998 * 109.64332 * 8.94838 * 22 7 2 35 35 H 1.08992 * 109.62506 * 248.36149 * 22 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 6 1.2677 -2.5152 0.0005 9 6 1.8224 -3.3824 1.1356 10 6 3.3395 -3.5068 0.9850 11 1 3.5738 -3.9123 0.0008 12 7 3.8577 -4.4067 2.0185 13 6 3.8507 -5.7392 1.8169 14 8 3.4139 -6.1947 0.7776 15 7 4.3279 -6.5671 2.7675 16 6 4.3202 -7.9415 2.5598 17 7 3.8733 -8.5289 1.4943 18 6 3.9472 -9.8467 1.4629 19 6 4.4720 -10.3991 2.5580 20 16 4.8928 -9.1037 3.6754 21 6 3.9902 -2.1308 1.1362 22 6 3.5173 -1.2164 0.0011 23 1 -0.4851 0.8400 -0.0004 24 1 1.4202 -3.0195 -0.9536 25 1 0.2035 -2.3409 0.1597 26 1 1.3701 -4.3730 1.0905 27 1 1.5890 -2.9192 2.0942 28 1 4.2060 -4.0434 2.8477 29 1 4.6760 -6.2038 3.5968 30 1 3.6059 -10.4306 0.6208 31 1 4.6147 -11.4558 2.7293 32 1 3.7055 -1.6973 2.0949 33 1 5.0743 -2.2345 1.0917 34 1 3.8986 -0.2078 0.1607 35 1 3.8781 -1.6005 -0.9529 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189397583.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:49 Heat of formation + Delta-G solvation = -4.109959 kcal Electronic energy + Delta-G solvation = -19463.247858 eV Core-core repulsion = 16394.207772 eV Total energy + Delta-G solvation = -3069.040087 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.70201 -40.22778 -38.58431 -35.94865 -35.40256 -33.36876 -31.47236 -30.48753 -28.99965 -26.13093 -24.11861 -23.50697 -22.82839 -21.36498 -20.72787 -20.33679 -18.74781 -17.91096 -17.52333 -16.80588 -16.52201 -16.37076 -15.63530 -15.55263 -15.30291 -14.95234 -14.58698 -14.18562 -14.06673 -13.95551 -13.38349 -12.80473 -12.72976 -12.55702 -12.45378 -12.02751 -11.94100 -11.82479 -11.56652 -11.29714 -10.93788 -10.69915 -10.53650 -10.31889 -10.25903 -9.95435 -9.19385 -8.14287 -6.11048 -0.17131 -0.03076 0.73705 1.44018 1.44905 1.54403 1.56625 1.82028 2.29302 2.43675 2.93363 3.15155 3.76945 4.02402 4.23234 4.49025 4.49929 4.60822 4.71987 4.85765 4.90630 4.99609 5.03561 5.10148 5.21387 5.26373 5.31097 5.55126 5.58192 5.65987 5.70669 5.76886 5.83343 6.35013 6.72040 6.95205 7.11979 7.47264 7.50031 8.97154 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.049101 B = 0.003422 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.115264 B = 8179.902611 C = 8437.716269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.017 3.983 3 Si 0.949 3.051 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.236 1.236 7 C -0.500 4.500 8 C 0.009 3.991 9 C -0.102 4.102 10 C 0.186 3.814 11 H 0.053 0.947 12 N -0.716 5.716 13 C 0.693 3.307 14 O -0.581 6.581 15 N -0.633 5.633 16 C 0.257 3.743 17 N -0.534 5.534 18 C 0.039 3.961 19 C -0.265 4.265 20 S 0.188 5.812 21 C -0.102 4.102 22 C -0.022 4.022 23 H 0.263 0.737 24 H -0.013 1.013 25 H 0.023 0.977 26 H 0.021 0.979 27 H 0.051 0.949 28 H 0.413 0.587 29 H 0.437 0.563 30 H 0.188 0.812 31 H 0.215 0.785 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.280 -15.972 12.728 24.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.181 4.181 3 Si 0.774 3.226 4 H -0.204 1.204 5 H -0.221 1.221 6 H -0.160 1.160 7 C -0.519 4.519 8 C -0.029 4.029 9 C -0.141 4.141 10 C 0.081 3.919 11 H 0.071 0.929 12 N -0.372 5.372 13 C 0.390 3.610 14 O -0.455 6.455 15 N -0.288 5.288 16 C -0.111 4.111 17 N -0.257 5.257 18 C -0.111 4.111 19 C -0.405 4.405 20 S 0.436 5.564 21 C -0.140 4.140 22 C -0.060 4.060 23 H 0.072 0.928 24 H 0.006 0.994 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.250 0.750 29 H 0.277 0.723 30 H 0.205 0.795 31 H 0.232 0.768 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 13.953 -15.782 12.343 24.415 hybrid contribution -0.553 0.735 -0.521 1.057 sum 13.399 -15.047 11.823 23.361 Atomic orbital electron populations 1.70014 1.08085 1.27574 1.51948 1.25753 0.95393 1.02292 0.94618 0.85694 0.79624 0.78686 0.78581 1.20440 1.22099 1.16000 1.20637 0.91556 0.91239 1.48456 1.19293 0.97081 0.93981 0.92592 1.21775 0.95582 0.96867 0.99845 1.20555 0.92705 0.89070 0.89558 0.92854 1.45180 1.66649 1.02940 1.22452 1.16214 0.79219 0.82051 0.83502 1.91034 1.51063 1.75835 1.27616 1.41946 1.64572 1.01107 1.21204 1.23793 1.01639 0.90259 0.95450 1.66537 1.22728 1.11453 1.24937 1.21934 1.00911 0.87655 1.00575 1.27304 1.11043 1.05239 0.96921 1.83530 1.59555 0.95020 1.18289 1.21721 0.98824 0.92818 1.00658 1.19814 0.94213 0.96935 0.95008 0.92839 0.99430 0.95843 0.95971 0.92975 0.74977 0.72256 0.79537 0.76799 0.91274 0.90701 0.93261 0.96347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.89 12.73 21.45 0.27 -55.62 16 2 C 0.02 0.95 5.46 84.65 0.46 1.41 16 3 Si 0.95 42.00 27.53 68.60 1.89 43.89 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.24 -9.31 6.10 99.48 0.61 -8.70 16 7 C -0.50 -26.41 5.51 -16.16 -0.09 -26.49 16 8 C 0.01 0.47 5.97 30.11 0.18 0.65 16 9 C -0.10 -4.61 5.50 30.66 0.17 -4.44 16 10 C 0.19 7.13 2.35 44.96 0.11 7.24 16 11 H 0.05 2.37 7.58 -2.39 -0.02 2.35 16 12 N -0.72 -21.15 5.08 -457.95 -2.32 -23.48 16 13 C 0.69 23.25 8.49 179.05 1.52 24.77 16 14 O -0.58 -26.31 14.64 -3.99 -0.06 -26.37 16 15 N -0.63 -15.14 5.41 -327.46 -1.77 -16.91 16 16 C 0.26 6.61 8.02 179.21 1.44 8.05 16 17 N -0.53 -17.13 8.65 -201.75 -1.74 -18.87 16 18 C 0.04 0.90 11.34 83.57 0.95 1.85 16 19 C -0.26 -4.00 11.35 66.73 0.76 -3.25 16 20 S 0.19 2.79 23.22 -56.49 -1.31 1.48 16 21 C -0.10 -3.58 5.40 30.66 0.17 -3.42 16 22 C -0.02 -0.94 5.59 30.12 0.17 -0.77 16 23 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 24 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 25 H 0.02 1.38 7.07 -2.38 -0.02 1.37 16 26 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 28 H 0.41 8.39 8.61 -92.71 -0.80 7.59 16 29 H 0.44 5.97 8.83 -92.71 -0.82 5.15 16 30 H 0.19 3.51 8.06 -2.91 -0.02 3.48 16 31 H 0.22 1.51 8.06 -2.91 -0.02 1.48 16 32 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.05 2.03 4.60 -2.39 -0.01 2.02 16 35 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -77.91 302.52 0.20 -77.71 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -0.58 Total: 12.60 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 5.82 Total: 5.58 kcal Atomic # 7 Polarization: -109.32 SS G_CDS: -5.57 Total: -114.89 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.06 Total: -26.37 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.89 Total: 43.89 kcal Atomic # 16 Polarization: 2.79 SS G_CDS: -1.31 Total: 1.48 kcal Total: -77.91 0.20 -77.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189397583.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.599 kcal (2) G-P(sol) polarization free energy of solvation -77.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds