Wall clock time and date at job start Tue Mar 31 2020 05:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38272 * 119.94097 * 2 1 4 4 C 1.38155 * 120.07483 * 180.02562 * 3 2 1 5 5 C 1.38707 * 119.95836 * 359.97438 * 4 3 2 6 6 O 1.35927 * 120.05922 * 179.97438 * 5 4 3 7 7 C 1.42894 * 116.99963 * 6.19831 * 6 5 4 8 8 C 1.53937 * 113.73427 * 255.85737 * 7 6 5 9 9 N 1.48188 * 86.09953 * 221.95751 * 8 7 6 10 10 C 1.46903 * 111.07009 * 137.51770 * 9 8 7 11 11 C 1.50707 * 109.47050 * 70.56584 * 10 9 8 12 12 H 1.07995 * 119.99941 * 359.97438 * 11 10 9 13 13 C 1.37872 * 119.99883 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00386 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99909 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47214 * 89.99580 * 15 13 11 17 17 H 1.48503 * 109.46986 * 209.99826 * 15 13 11 18 18 H 1.48498 * 109.47013 * 329.99464 * 15 13 11 19 19 C 1.47960 * 90.80011 * 24.60022 * 9 8 7 20 20 C 1.38816 * 119.87812 * 359.97438 * 5 4 3 21 21 Cl 1.73598 * 120.03319 * 179.97438 * 20 5 4 22 22 C 1.38247 * 119.92572 * 0.25859 * 20 5 4 23 23 H 1.08994 * 109.47590 * 89.99284 * 1 2 3 24 24 H 1.09001 * 109.47499 * 210.00232 * 1 2 3 25 25 H 1.09000 * 109.46974 * 329.99734 * 1 2 3 26 26 H 1.08001 * 119.96308 * 0.02562 * 3 2 1 27 27 H 1.08003 * 120.02145 * 179.97438 * 4 3 2 28 28 H 1.09000 * 112.94036 * 27.42119 * 7 6 5 29 29 H 1.09002 * 113.75733 * 336.23883 * 8 7 6 30 30 H 1.08998 * 113.75971 * 107.60354 * 8 7 6 31 31 H 1.09007 * 109.47204 * 190.56405 * 10 9 8 32 32 H 1.08995 * 109.47439 * 310.56523 * 10 9 8 33 33 H 0.96997 * 120.00129 * 179.97438 * 14 13 11 34 34 H 1.09002 * 113.75456 * 221.08434 * 19 9 8 35 35 H 1.08995 * 113.76194 * 89.72420 * 19 9 8 36 36 H 1.08003 * 119.98246 * 179.75139 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5787 1.2014 -0.0005 5 6 4.2741 0.0013 -0.0005 6 8 5.6334 0.0021 -0.0016 7 6 6.2815 1.2683 0.1348 8 6 6.8682 1.8090 -1.1816 9 7 8.0447 2.2099 -0.3747 10 6 9.2971 1.9048 -1.0792 11 6 9.4546 2.8389 -2.2514 12 1 8.6996 3.5843 -2.4530 13 6 10.5619 2.7411 -3.0669 14 7 11.4811 1.8330 -2.8217 15 14 10.7574 3.8993 -4.5194 16 1 11.4912 5.1158 -4.0872 17 1 11.5195 3.2181 -5.5967 18 1 9.4169 4.2847 -5.0290 19 6 7.7353 1.1698 0.6311 20 6 3.5794 -1.2005 0.0005 21 17 4.4458 -2.7049 -0.0001 22 6 2.1970 -1.1980 -0.0038 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6555 2.1326 0.0004 27 1 4.1168 2.1378 -0.0010 28 1 5.6805 1.9967 0.6791 29 1 7.0837 1.0341 -1.9173 30 1 6.3126 2.6494 -1.5976 31 1 10.1380 2.0324 -0.3974 32 1 9.2718 0.8752 -1.4360 33 1 12.2600 1.7640 -3.3957 34 1 7.8712 1.5006 1.6608 35 1 8.2050 0.2077 0.4268 36 1 1.6555 -2.1325 -0.0070 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225344634.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:31 Heat of formation + Delta-G solvation = 13.239577 kcal Electronic energy + Delta-G solvation = -19098.248149 eV Core-core repulsion = 15995.623937 eV Total energy + Delta-G solvation = -3102.624212 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.49970 -39.00665 -36.93401 -36.41420 -32.91954 -32.00138 -30.99819 -29.26293 -26.68022 -25.82458 -25.05324 -23.28129 -21.98459 -21.02299 -19.37860 -18.43724 -16.57670 -16.23376 -15.87697 -15.42458 -15.02845 -14.83753 -14.30598 -14.03348 -13.94823 -13.80248 -13.25868 -12.75971 -12.46432 -12.28999 -12.12253 -11.90977 -11.88843 -11.71239 -11.22836 -11.15149 -10.93632 -10.78557 -10.68235 -10.31804 -10.15151 -9.75023 -9.21568 -9.00293 -8.53201 -8.08695 -7.92352 -6.08165 -4.10675 1.01655 1.18389 2.17134 3.19593 3.29573 3.35417 3.39038 3.45726 4.38564 4.55011 4.59346 4.71906 4.77087 4.87084 5.01590 5.08214 5.14150 5.28036 5.36814 5.41020 5.62301 5.65990 5.74539 5.92852 6.00516 6.06578 6.09332 6.28677 6.33079 6.34491 6.54456 6.56647 7.15784 7.43187 7.56517 7.80694 8.03259 8.34533 8.95989 9.53988 11.03076 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.024033 B = 0.003677 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.779632 B = 7612.059344 C = 8064.969579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.123 4.123 3 C -0.074 4.074 4 C -0.195 4.195 5 C 0.145 3.855 6 O -0.292 6.292 7 C 0.041 3.959 8 C 0.008 3.992 9 N -0.473 5.473 10 C 0.163 3.837 11 C -0.513 4.513 12 H 0.062 0.938 13 C 0.057 3.943 14 N -0.896 5.896 15 Si 0.900 3.100 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.273 1.273 19 C 0.009 3.991 20 C -0.071 4.071 21 Cl -0.060 7.060 22 C -0.075 4.075 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.129 0.871 27 H 0.141 0.859 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.035 0.965 32 H 0.002 0.998 33 H 0.262 0.738 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.807 -4.966 7.126 22.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.124 4.124 3 C -0.093 4.093 4 C -0.213 4.213 5 C 0.098 3.902 6 O -0.204 6.204 7 C -0.016 4.016 8 C -0.121 4.121 9 N -0.198 5.198 10 C 0.037 3.963 11 C -0.551 4.551 12 H 0.080 0.920 13 C -0.145 4.145 14 N -0.535 5.535 15 Si 0.727 3.273 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.120 4.120 20 C -0.098 4.098 21 Cl -0.031 7.031 22 C -0.094 4.094 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.147 0.853 27 H 0.159 0.841 28 H 0.120 0.880 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.053 0.947 32 H 0.020 0.980 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -20.292 -4.655 7.232 22.039 hybrid contribution 0.431 -0.182 -1.152 1.244 sum -19.860 -4.837 6.080 21.326 Atomic orbital electron populations 1.20696 0.90587 1.02727 1.02313 1.19709 0.96331 0.92313 1.04046 1.20925 0.93268 0.97854 0.97215 1.21332 0.95197 0.97214 1.07595 1.18783 0.84066 0.92355 0.95010 1.86310 1.14614 1.33432 1.86053 1.25038 0.93268 0.83492 0.99753 1.24272 0.93561 0.99477 0.94773 1.68636 1.04193 1.38381 1.08576 1.20226 0.86532 0.95717 0.93834 1.21063 1.06414 1.17283 1.10375 0.91964 1.24992 0.95723 0.95740 0.98044 1.69954 1.10558 1.33984 1.39053 0.86471 0.78203 0.80733 0.81869 1.20537 1.21209 1.19828 1.24146 0.91254 0.97110 0.99457 1.20204 0.91919 0.85817 1.11909 1.98367 1.76969 1.30647 1.97099 1.20734 0.90813 0.98758 0.99098 0.91271 0.91613 0.91512 0.85301 0.84110 0.87978 0.90301 0.89857 0.94671 0.97992 0.92790 0.89317 0.90625 0.84690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.01 36.00 0.36 -0.35 16 2 C -0.12 -1.20 5.88 -104.61 -0.62 -1.81 16 3 C -0.07 -0.75 9.69 -39.60 -0.38 -1.14 16 4 C -0.19 -2.36 9.01 -39.44 -0.36 -2.72 16 5 C 0.15 2.07 6.67 -39.19 -0.26 1.81 16 6 O -0.29 -4.75 9.62 -19.51 -0.19 -4.94 16 7 C 0.04 0.65 3.78 -25.80 -0.10 0.55 16 8 C 0.01 0.16 7.32 -2.63 -0.02 0.14 16 9 N -0.47 -10.15 6.25 -239.76 -1.50 -11.65 16 10 C 0.16 4.26 4.58 -4.97 -0.02 4.24 16 11 C -0.51 -14.48 8.84 -34.44 -0.30 -14.78 16 12 H 0.06 1.74 7.80 -52.49 -0.41 1.33 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 15 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 C 0.01 0.17 7.81 -2.76 -0.02 0.14 16 20 C -0.07 -0.95 6.33 -39.36 -0.25 -1.20 16 21 Cl -0.06 -0.81 28.50 -51.86 -1.48 -2.29 16 22 C -0.08 -0.81 9.48 -39.57 -0.38 -1.19 16 23 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 25 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 26 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 27 H 0.14 1.59 5.98 -52.48 -0.31 1.27 16 28 H 0.10 1.40 6.11 -51.93 -0.32 1.08 16 29 H 0.08 1.65 7.79 -51.93 -0.40 1.24 16 30 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.00 0.06 7.70 -51.93 -0.40 -0.34 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 34 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.08 1.41 7.79 -51.93 -0.40 1.01 16 36 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 LS Contribution 319.70 15.07 4.82 4.82 Total: -1.00 -30.61 319.70 -9.83 -40.44 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -4.76 Total: -2.26 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -2.44 Total: -14.77 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: -0.76 Total: -37.65 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.19 Total: -4.94 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.48 Total: -2.29 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.61 -9.83 -40.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225344634.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.683 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds