Wall clock time and date at job start Tue Mar 31 2020 05:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38272 * 119.94097 * 2 1 4 4 C 1.38155 * 120.07483 * 180.02562 * 3 2 1 5 5 C 1.38707 * 119.95836 * 359.97438 * 4 3 2 6 6 O 1.35927 * 120.05922 * 179.97438 * 5 4 3 7 7 C 1.42894 * 116.99963 * 6.19831 * 6 5 4 8 8 C 1.53937 * 113.73427 * 255.85737 * 7 6 5 9 9 N 1.48188 * 86.09953 * 221.95751 * 8 7 6 10 10 C 1.46903 * 111.07009 * 137.51770 * 9 8 7 11 11 C 1.50707 * 109.47050 * 70.56584 * 10 9 8 12 12 H 1.07995 * 119.99941 * 359.97438 * 11 10 9 13 13 C 1.37872 * 119.99883 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00386 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99909 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47214 * 89.99580 * 15 13 11 17 17 H 1.48503 * 109.46986 * 209.99826 * 15 13 11 18 18 H 1.48498 * 109.47013 * 329.99464 * 15 13 11 19 19 C 1.47960 * 90.80011 * 24.60022 * 9 8 7 20 20 C 1.38816 * 119.87812 * 359.97438 * 5 4 3 21 21 Cl 1.73598 * 120.03319 * 179.97438 * 20 5 4 22 22 C 1.38247 * 119.92572 * 0.25859 * 20 5 4 23 23 H 1.08994 * 109.47590 * 89.99284 * 1 2 3 24 24 H 1.09001 * 109.47499 * 210.00232 * 1 2 3 25 25 H 1.09000 * 109.46974 * 329.99734 * 1 2 3 26 26 H 1.08001 * 119.96308 * 0.02562 * 3 2 1 27 27 H 1.08003 * 120.02145 * 179.97438 * 4 3 2 28 28 H 1.09000 * 112.94036 * 27.42119 * 7 6 5 29 29 H 1.09002 * 113.75733 * 336.23883 * 8 7 6 30 30 H 1.08998 * 113.75971 * 107.60354 * 8 7 6 31 31 H 1.09007 * 109.47204 * 190.56405 * 10 9 8 32 32 H 1.08995 * 109.47439 * 310.56523 * 10 9 8 33 33 H 0.96997 * 120.00129 * 179.97438 * 14 13 11 34 34 H 1.09002 * 113.75456 * 221.08434 * 19 9 8 35 35 H 1.08995 * 113.76194 * 89.72420 * 19 9 8 36 36 H 1.08003 * 119.98246 * 179.75139 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1982 0.0000 4 6 3.5787 1.2014 -0.0005 5 6 4.2741 0.0013 -0.0005 6 8 5.6334 0.0021 -0.0016 7 6 6.2815 1.2683 0.1348 8 6 6.8682 1.8090 -1.1816 9 7 8.0447 2.2099 -0.3747 10 6 9.2971 1.9048 -1.0792 11 6 9.4546 2.8389 -2.2514 12 1 8.6996 3.5843 -2.4530 13 6 10.5619 2.7411 -3.0669 14 7 11.4811 1.8330 -2.8217 15 14 10.7574 3.8993 -4.5194 16 1 11.4912 5.1158 -4.0872 17 1 11.5195 3.2181 -5.5967 18 1 9.4169 4.2847 -5.0290 19 6 7.7353 1.1698 0.6311 20 6 3.5794 -1.2005 0.0005 21 17 4.4458 -2.7049 -0.0001 22 6 2.1970 -1.1980 -0.0038 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6555 2.1326 0.0004 27 1 4.1168 2.1378 -0.0010 28 1 5.6805 1.9967 0.6791 29 1 7.0837 1.0341 -1.9173 30 1 6.3126 2.6494 -1.5976 31 1 10.1380 2.0324 -0.3974 32 1 9.2718 0.8752 -1.4360 33 1 12.2600 1.7640 -3.3957 34 1 7.8712 1.5006 1.6608 35 1 8.2050 0.2077 0.4268 36 1 1.6555 -2.1325 -0.0070 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225344634.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:31 Heat of formation + Delta-G solvation = -6.292460 kcal Electronic energy + Delta-G solvation = -19099.095122 eV Core-core repulsion = 15995.623937 eV Total energy + Delta-G solvation = -3103.471185 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.68158 -40.23103 -38.14066 -37.40951 -35.03580 -32.85527 -31.90634 -31.06610 -27.75090 -27.33076 -26.62208 -24.50382 -23.29243 -22.24455 -20.80565 -19.55709 -18.60875 -17.51489 -16.87886 -16.71224 -16.48821 -16.27380 -15.69351 -15.14001 -15.05622 -14.87214 -14.40548 -14.10158 -13.84137 -13.76650 -13.37589 -13.33818 -13.02342 -12.82559 -12.66604 -12.58691 -12.31705 -12.16188 -12.04033 -11.76215 -11.57186 -11.44092 -11.20232 -10.68344 -9.88759 -9.74919 -9.03890 -8.26719 -6.38131 0.14399 0.29008 1.19548 1.38757 1.40727 1.51728 2.04911 2.37307 2.58459 3.06203 3.13495 3.34398 3.70081 3.82758 3.92166 3.98537 4.24195 4.27594 4.40607 4.47309 4.60123 4.66782 4.67950 4.80496 4.87063 4.91452 4.92482 5.02277 5.10182 5.23427 5.26118 5.45160 5.55062 5.70152 5.75534 6.02016 6.26984 6.33355 6.76223 7.31989 8.85312 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.024033 B = 0.003677 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.779632 B = 7612.059344 C = 8064.969579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.115 4.115 3 C -0.073 4.073 4 C -0.198 4.198 5 C 0.111 3.889 6 O -0.312 6.312 7 C 0.070 3.930 8 C 0.004 3.996 9 N -0.482 5.482 10 C 0.178 3.822 11 C -0.531 4.531 12 H 0.064 0.936 13 C 0.001 3.999 14 N -0.934 5.934 15 Si 0.973 3.027 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.263 1.263 19 C 0.005 3.995 20 C -0.087 4.087 21 Cl -0.074 7.074 22 C -0.079 4.079 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.159 0.841 27 H 0.149 0.851 28 H 0.134 0.866 29 H 0.051 0.949 30 H 0.098 0.902 31 H 0.007 0.993 32 H -0.028 1.028 33 H 0.266 0.734 34 H 0.115 0.885 35 H 0.059 0.941 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.703 -3.551 7.083 24.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.115 4.115 3 C -0.091 4.091 4 C -0.217 4.217 5 C 0.065 3.935 6 O -0.225 6.225 7 C 0.014 3.986 8 C -0.126 4.126 9 N -0.206 5.206 10 C 0.051 3.949 11 C -0.569 4.569 12 H 0.082 0.918 13 C -0.197 4.197 14 N -0.574 5.574 15 Si 0.797 3.203 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.187 1.187 19 C -0.124 4.124 20 C -0.114 4.114 21 Cl -0.045 7.045 22 C -0.097 4.097 23 H 0.097 0.903 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.177 0.823 27 H 0.166 0.834 28 H 0.151 0.849 29 H 0.069 0.931 30 H 0.116 0.884 31 H 0.025 0.975 32 H -0.011 1.011 33 H 0.075 0.925 34 H 0.133 0.867 35 H 0.077 0.923 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -23.218 -3.244 7.205 24.526 hybrid contribution 1.180 -0.675 -1.092 1.744 sum -22.038 -3.919 6.113 23.203 Atomic orbital electron populations 1.20787 0.88013 1.04128 1.03339 1.20154 0.98119 0.91624 1.01614 1.21318 0.92552 0.99393 0.95842 1.21503 0.96237 0.96567 1.07368 1.19070 0.83144 0.93694 0.97604 1.86259 1.16291 1.33049 1.86905 1.24667 0.92656 0.84169 0.97148 1.24269 0.93054 0.99460 0.95770 1.68513 1.02856 1.39835 1.09382 1.19865 0.88139 0.93708 0.93190 1.21395 1.06683 1.17584 1.11208 0.91801 1.25972 0.95238 0.97394 1.01115 1.70086 1.11182 1.35706 1.40407 0.85329 0.78609 0.78448 0.77936 1.19567 1.20693 1.18695 1.24215 0.92835 0.95492 0.99850 1.20483 0.92866 0.85094 1.12969 1.98356 1.77502 1.31452 1.97235 1.21044 0.89844 1.00321 0.98529 0.90269 0.90507 0.89954 0.82300 0.83381 0.84903 0.93054 0.88407 0.97452 1.01052 0.92527 0.86711 0.92276 0.82816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 71.24 0.71 -0.26 16 2 C -0.11 -1.85 5.88 -19.85 -0.12 -1.96 16 3 C -0.07 -1.23 9.69 22.26 0.22 -1.02 16 4 C -0.20 -4.38 9.01 22.36 0.20 -4.17 16 5 C 0.11 3.08 6.67 22.52 0.15 3.23 16 6 O -0.31 -10.21 9.62 -92.73 -0.89 -11.10 16 7 C 0.07 2.19 3.78 31.24 0.12 2.31 16 8 C 0.00 0.14 7.32 86.37 0.63 0.77 16 9 N -0.48 -21.08 6.25 -915.67 -5.72 -26.81 16 10 C 0.18 9.75 4.58 85.56 0.39 10.14 16 11 C -0.53 -30.62 8.84 25.60 0.23 -30.40 16 12 H 0.06 3.58 7.80 -2.91 -0.02 3.56 16 13 C 0.00 0.07 5.46 84.65 0.46 0.53 16 14 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 15 Si 0.97 44.61 29.54 68.60 2.03 46.63 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 18 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 19 C 0.00 0.17 7.81 86.41 0.67 0.85 16 20 C -0.09 -2.25 6.33 22.41 0.14 -2.11 16 21 Cl -0.07 -2.04 28.50 -2.72 -0.08 -2.11 16 22 C -0.08 -1.54 9.48 22.28 0.21 -1.33 16 23 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.08 0.57 8.09 -2.39 -0.02 0.55 16 25 H 0.08 0.55 8.08 -2.39 -0.02 0.53 16 26 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 27 H 0.15 2.95 5.98 -2.91 -0.02 2.93 16 28 H 0.13 3.35 6.11 -2.39 -0.01 3.33 16 29 H 0.05 2.25 7.79 -2.39 -0.02 2.24 16 30 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 31 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 32 H -0.03 -1.68 7.70 -2.39 -0.02 -1.70 16 33 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 34 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 35 H 0.06 2.33 7.79 -2.39 -0.02 2.31 16 36 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -68.22 319.70 0.72 -67.51 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 1.08 Total: 6.18 kcal Atomic # 6 Polarization: -27.44 SS G_CDS: 4.02 Total: -23.42 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -5.44 Total: -83.69 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: -0.89 Total: -11.10 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -0.08 Total: -2.11 kcal Total: -68.22 0.72 -67.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225344634.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.215 kcal (2) G-P(sol) polarization free energy of solvation -68.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds