Wall clock time and date at job start Tue Mar 31 2020 05:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38255 * 120.74370 * 2 1 4 4 N 1.32409 * 119.27605 * 180.29841 * 3 2 1 5 5 C 1.32560 * 120.88040 * 359.72365 * 4 3 2 6 6 S 1.76196 * 119.19579 * 179.97438 * 5 4 3 7 7 N 1.32522 * 121.61089 * 359.97438 * 5 4 3 8 8 C 1.32742 * 120.63856 * 0.02562 * 7 5 4 9 9 O 1.35518 * 120.46020 * 180.02562 * 8 7 5 10 10 C 1.42896 * 117.00318 * 359.97438 * 9 8 7 11 11 H 1.08998 * 110.91187 * 327.55917 * 10 9 8 12 12 C 1.55441 * 111.11943 * 203.55568 * 10 9 8 13 13 C 1.54323 * 102.97188 * 206.46451 * 12 10 9 14 14 N 1.47022 * 107.26753 * 22.19263 * 13 12 10 15 15 C 1.36940 * 125.64951 * 181.03524 * 14 13 12 16 16 H 1.07993 * 120.00626 * 173.96059 * 15 14 13 17 17 C 1.38813 * 119.99685 * 353.96137 * 15 14 13 18 18 N 1.31622 * 120.00459 * 6.83562 * 17 15 14 19 19 Si 1.86803 * 120.00134 * 186.84485 * 17 15 14 20 20 H 1.48493 * 109.47511 * 94.97953 * 19 17 15 21 21 H 1.48499 * 109.47218 * 214.98678 * 19 17 15 22 22 H 1.48501 * 109.46706 * 334.97961 * 19 17 15 23 23 C 1.47424 * 108.70453 * 1.06423 * 14 13 12 24 24 H 1.08999 * 109.47240 * 270.25133 * 1 2 3 25 25 H 1.09001 * 109.47354 * 30.24981 * 1 2 3 26 26 H 1.09003 * 109.47729 * 150.25184 * 1 2 3 27 27 H 1.08001 * 120.36390 * 0.02562 * 3 2 1 28 28 H 1.40999 * 99.99735 * 270.01636 * 6 5 4 29 29 H 1.09002 * 110.70736 * 88.09347 * 12 10 9 30 30 H 1.08995 * 110.86058 * 324.91036 * 12 10 9 31 31 H 1.09004 * 109.88274 * 262.77884 * 13 12 10 32 32 H 1.08993 * 110.01225 * 141.68434 * 13 12 10 33 33 H 0.96996 * 120.00616 * 180.02562 * 18 17 15 34 34 H 1.08998 * 110.36838 * 94.71045 * 23 14 13 35 35 H 1.09001 * 110.36387 * 216.92232 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2137 1.1883 0.0000 4 7 3.5373 1.1543 -0.0060 5 6 4.1884 -0.0004 -0.0065 6 16 5.9503 0.0063 -0.0153 7 7 3.5464 -1.1597 -0.0006 8 6 2.2195 -1.1982 0.0056 9 8 1.5667 -2.3858 0.0123 10 6 2.3699 -3.5677 0.0116 11 1 3.2966 -3.4080 -0.5397 12 6 1.5825 -4.7796 -0.5605 13 6 2.2632 -5.9867 0.1185 14 7 2.9201 -5.4893 1.3361 15 6 3.6528 -6.2440 2.2129 16 1 4.1778 -5.7678 3.0277 17 6 3.7209 -7.6214 2.0543 18 7 3.1953 -8.1880 0.9889 19 14 4.5582 -8.6709 3.3531 20 1 3.5410 -9.1862 4.3044 21 1 5.2471 -9.8121 2.6988 22 1 5.5521 -7.8486 4.0887 23 6 2.6588 -4.0434 1.4573 24 1 -0.3634 0.0045 1.0276 25 1 -0.3634 0.8877 -0.5177 26 1 -0.3635 -0.8922 -0.5099 27 1 1.6919 2.1338 0.0004 28 1 6.1881 0.0043 -1.4051 29 1 1.6924 -4.8340 -1.6437 30 1 0.5298 -4.7243 -0.2835 31 1 3.0051 -6.4198 -0.5524 32 1 1.5172 -6.7372 0.3800 33 1 3.2425 -9.1505 0.8782 34 1 1.7928 -3.8666 2.0951 35 1 3.5343 -3.5319 1.8571 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225743078.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:10 Heat of formation + Delta-G solvation = 46.160592 kcal Electronic energy + Delta-G solvation = -19687.371440 eV Core-core repulsion = 16620.511248 eV Total energy + Delta-G solvation = -3066.860192 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.29618 -38.83419 -36.45357 -34.03817 -33.10077 -32.10578 -29.31739 -27.82964 -27.45689 -24.97268 -23.89125 -23.26891 -20.69725 -20.21024 -19.25859 -18.09373 -17.17469 -16.88224 -16.12251 -15.20812 -14.75809 -14.63594 -14.57096 -14.29251 -13.83558 -13.57619 -13.21985 -12.92215 -12.57832 -12.40162 -12.06532 -11.81625 -11.50639 -10.97597 -10.87042 -10.78429 -10.72598 -10.40701 -10.13252 -9.98428 -9.94196 -9.70698 -9.51188 -8.87644 -8.60813 -8.34215 -6.88229 -5.75328 -3.08488 0.37488 1.02234 1.13773 2.28085 2.89980 3.40892 3.46255 3.48265 3.52363 3.90473 4.46201 4.47707 4.56028 4.69714 4.87460 5.20076 5.35319 5.43149 5.52388 5.57270 5.65385 5.70009 5.76914 5.97366 6.16475 6.32464 6.38265 6.54681 6.62196 6.72024 7.29608 7.48376 7.54020 7.72316 7.77801 8.20582 9.17866 9.77668 10.42249 11.37195 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.020633 B = 0.004573 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.743109 B = 6121.069062 C = 7027.269587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.191 4.191 3 C 0.159 3.841 4 N -0.503 5.503 5 C 0.327 3.673 6 S -0.042 6.042 7 N -0.524 5.524 8 C 0.367 3.633 9 O -0.283 6.283 10 C 0.068 3.932 11 H 0.096 0.904 12 C -0.137 4.137 13 C 0.179 3.821 14 N -0.600 5.600 15 C -0.229 4.229 16 H 0.080 0.920 17 C -0.006 4.006 18 N -0.922 5.922 19 Si 0.913 3.087 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.127 3.873 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.178 0.822 28 H 0.109 0.891 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.253 0.747 34 H 0.025 0.975 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.710 17.939 -5.103 19.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.197 4.197 3 C -0.007 4.007 4 N -0.223 5.223 5 C -0.051 4.051 6 S 0.111 5.889 7 N -0.255 5.255 8 C 0.177 3.823 9 O -0.186 6.186 10 C 0.012 3.988 11 H 0.114 0.886 12 C -0.175 4.175 13 C 0.054 3.946 14 N -0.328 5.328 15 C -0.357 4.357 16 H 0.098 0.902 17 C -0.202 4.202 18 N -0.569 5.569 19 Si 0.743 3.257 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.205 1.205 23 C 0.000 4.000 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.195 0.805 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.056 17.563 -4.849 18.336 hybrid contribution -1.199 -0.766 -0.269 1.448 sum -3.255 16.797 -5.118 17.858 Atomic orbital electron populations 1.20567 0.88330 1.03571 1.03187 1.20991 0.99514 0.91816 1.07344 1.23115 0.89246 0.97567 0.90747 1.69021 1.09467 1.28687 1.15158 1.23871 0.99321 0.84891 0.97010 1.87056 0.92079 1.97329 1.12420 1.68802 1.08386 1.30405 1.17881 1.20188 0.87316 0.87374 0.87463 1.86262 1.35368 1.11928 1.85020 1.24032 0.94377 0.80226 1.00171 0.88569 1.23134 1.00023 0.94433 0.99915 1.21206 0.95585 0.90529 0.87269 1.44303 1.60635 1.01946 1.25884 1.19079 1.22808 0.88387 1.05384 0.90229 1.24821 1.00877 0.96445 0.98045 1.69948 1.50265 1.09802 1.26910 0.86082 0.78702 0.80099 0.80830 1.21565 1.21704 1.20497 1.21791 0.98474 0.87254 0.92490 0.90405 0.90972 0.90327 0.80536 0.92676 0.91446 0.91157 0.93377 0.92815 0.93653 0.95737 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.86 9.85 36.00 0.35 -0.50 16 2 C -0.19 -2.27 5.93 -104.18 -0.62 -2.88 16 3 C 0.16 1.70 10.99 -17.30 -0.19 1.51 16 4 N -0.50 -6.71 10.40 -13.51 -0.14 -6.85 16 5 C 0.33 4.87 7.91 -90.87 -0.72 4.15 16 6 S -0.04 -0.54 26.15 -107.50 -2.81 -3.36 16 7 N -0.52 -8.67 8.85 -13.50 -0.12 -8.78 16 8 C 0.37 5.68 7.50 -16.72 -0.13 5.55 16 9 O -0.28 -4.73 9.12 -18.25 -0.17 -4.90 16 10 C 0.07 1.30 3.25 -24.43 -0.08 1.22 16 11 H 0.10 1.90 7.20 -51.93 -0.37 1.52 16 12 C -0.14 -2.59 6.70 -24.74 -0.17 -2.76 16 13 C 0.18 4.34 5.38 -3.06 -0.02 4.32 16 14 N -0.60 -15.66 3.40 -170.08 -0.58 -16.24 16 15 C -0.23 -6.47 10.26 -15.06 -0.15 -6.63 16 16 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 17 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 18 N -0.92 -27.00 10.36 55.49 0.57 -26.43 16 19 Si 0.91 22.21 29.56 -169.99 -5.02 17.19 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.13 2.80 6.96 -2.53 -0.02 2.78 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 26 H 0.08 0.76 7.62 -51.93 -0.40 0.36 16 27 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.11 1.15 9.55 96.90 0.93 2.08 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.05 1.27 7.55 -51.93 -0.39 0.88 16 32 H 0.05 1.42 7.36 -51.93 -0.38 1.04 16 33 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 311.67 15.07 4.70 4.70 Total: -1.00 -31.43 311.67 -8.52 -39.95 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -3.12 Total: -1.79 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: -1.83 Total: 6.51 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: -0.26 Total: -58.30 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.17 Total: -4.90 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: -0.54 SS G_CDS: -2.81 Total: -3.36 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.43 -8.52 -39.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225743078.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.111 kcal (2) G-P(sol) polarization free energy of solvation -31.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds