Wall clock time and date at job start Tue Mar 31 2020 05:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38255 * 120.74370 * 2 1 4 4 N 1.32409 * 119.27605 * 180.29841 * 3 2 1 5 5 C 1.32560 * 120.88040 * 359.72365 * 4 3 2 6 6 S 1.76196 * 119.19579 * 179.97438 * 5 4 3 7 7 N 1.32522 * 121.61089 * 359.97438 * 5 4 3 8 8 C 1.32742 * 120.63856 * 0.02562 * 7 5 4 9 9 O 1.35518 * 120.46020 * 180.02562 * 8 7 5 10 10 C 1.42896 * 117.00318 * 359.97438 * 9 8 7 11 11 H 1.08998 * 110.91187 * 327.55917 * 10 9 8 12 12 C 1.55441 * 111.11943 * 203.55568 * 10 9 8 13 13 C 1.54323 * 102.97188 * 206.46451 * 12 10 9 14 14 N 1.47022 * 107.26753 * 22.19263 * 13 12 10 15 15 C 1.36940 * 125.64951 * 181.03524 * 14 13 12 16 16 H 1.07993 * 120.00626 * 173.96059 * 15 14 13 17 17 C 1.38813 * 119.99685 * 353.96137 * 15 14 13 18 18 N 1.31622 * 120.00459 * 6.83562 * 17 15 14 19 19 Si 1.86803 * 120.00134 * 186.84485 * 17 15 14 20 20 H 1.48493 * 109.47511 * 94.97953 * 19 17 15 21 21 H 1.48499 * 109.47218 * 214.98678 * 19 17 15 22 22 H 1.48501 * 109.46706 * 334.97961 * 19 17 15 23 23 C 1.47424 * 108.70453 * 1.06423 * 14 13 12 24 24 H 1.08999 * 109.47240 * 270.25133 * 1 2 3 25 25 H 1.09001 * 109.47354 * 30.24981 * 1 2 3 26 26 H 1.09003 * 109.47729 * 150.25184 * 1 2 3 27 27 H 1.08001 * 120.36390 * 0.02562 * 3 2 1 28 28 H 1.40999 * 99.99735 * 270.01636 * 6 5 4 29 29 H 1.09002 * 110.70736 * 88.09347 * 12 10 9 30 30 H 1.08995 * 110.86058 * 324.91036 * 12 10 9 31 31 H 1.09004 * 109.88274 * 262.77884 * 13 12 10 32 32 H 1.08993 * 110.01225 * 141.68434 * 13 12 10 33 33 H 0.96996 * 120.00616 * 180.02562 * 18 17 15 34 34 H 1.08998 * 110.36838 * 94.71045 * 23 14 13 35 35 H 1.09001 * 110.36387 * 216.92232 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2137 1.1883 0.0000 4 7 3.5373 1.1543 -0.0060 5 6 4.1884 -0.0004 -0.0065 6 16 5.9503 0.0063 -0.0153 7 7 3.5464 -1.1597 -0.0006 8 6 2.2195 -1.1982 0.0056 9 8 1.5667 -2.3858 0.0123 10 6 2.3699 -3.5677 0.0116 11 1 3.2966 -3.4080 -0.5397 12 6 1.5825 -4.7796 -0.5605 13 6 2.2632 -5.9867 0.1185 14 7 2.9201 -5.4893 1.3361 15 6 3.6528 -6.2440 2.2129 16 1 4.1778 -5.7678 3.0277 17 6 3.7209 -7.6214 2.0543 18 7 3.1953 -8.1880 0.9889 19 14 4.5582 -8.6709 3.3531 20 1 3.5410 -9.1862 4.3044 21 1 5.2471 -9.8121 2.6988 22 1 5.5521 -7.8486 4.0887 23 6 2.6588 -4.0434 1.4573 24 1 -0.3634 0.0045 1.0276 25 1 -0.3634 0.8877 -0.5177 26 1 -0.3635 -0.8922 -0.5099 27 1 1.6919 2.1338 0.0004 28 1 6.1881 0.0043 -1.4051 29 1 1.6924 -4.8340 -1.6437 30 1 0.5298 -4.7243 -0.2835 31 1 3.0051 -6.4198 -0.5524 32 1 1.5172 -6.7372 0.3800 33 1 3.2425 -9.1505 0.8782 34 1 1.7928 -3.8666 2.0951 35 1 3.5343 -3.5319 1.8571 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225743078.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:10 Heat of formation + Delta-G solvation = 24.632310 kcal Electronic energy + Delta-G solvation = -19688.304976 eV Core-core repulsion = 16620.511248 eV Total energy + Delta-G solvation = -3067.793728 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.37029 -40.20959 -38.13106 -35.00639 -34.56790 -33.73332 -31.21129 -29.22273 -28.68026 -26.75288 -25.25380 -24.22603 -22.30625 -22.01598 -20.41241 -19.40351 -18.79916 -18.25728 -17.31892 -16.79035 -16.26231 -16.13206 -15.79861 -15.51357 -15.24124 -14.73433 -14.54578 -14.18565 -13.96533 -13.88408 -13.55768 -13.16784 -12.96274 -12.75952 -12.51562 -12.24012 -12.18139 -12.03842 -11.88591 -11.77161 -11.56167 -11.23856 -10.73914 -10.58420 -9.92534 -9.35055 -8.98337 -7.91084 -5.27314 -0.61418 0.00225 0.13100 1.35885 1.45718 1.47572 1.56560 1.66270 2.46994 2.50362 2.87313 3.28005 3.43704 3.52165 3.64555 3.70943 3.85609 3.89480 4.03322 4.08611 4.50125 4.62402 4.77117 4.81669 4.83554 4.88730 4.97294 5.01638 5.34253 5.39080 5.54731 5.62786 5.68166 5.97150 6.13923 6.68375 7.04016 7.68028 8.32132 9.20019 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.020633 B = 0.004573 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.743109 B = 6121.069062 C = 7027.269587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.177 4.177 3 C 0.166 3.834 4 N -0.506 5.506 5 C 0.309 3.691 6 S -0.058 6.058 7 N -0.553 5.553 8 C 0.333 3.667 9 O -0.282 6.282 10 C 0.091 3.909 11 H 0.087 0.913 12 C -0.120 4.120 13 C 0.186 3.814 14 N -0.621 5.621 15 C -0.250 4.250 16 H 0.079 0.921 17 C -0.058 4.058 18 N -0.947 5.947 19 Si 0.980 3.020 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.269 1.269 23 C 0.128 3.872 24 H 0.087 0.913 25 H 0.108 0.892 26 H 0.068 0.932 27 H 0.228 0.772 28 H 0.131 0.869 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.017 0.983 32 H 0.024 0.976 33 H 0.250 0.750 34 H 0.026 0.974 35 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.749 20.126 -5.210 21.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.182 4.182 3 C 0.001 3.999 4 N -0.226 5.226 5 C -0.069 4.069 6 S 0.095 5.905 7 N -0.285 5.285 8 C 0.144 3.856 9 O -0.185 6.185 10 C 0.034 3.966 11 H 0.105 0.895 12 C -0.158 4.158 13 C 0.061 3.939 14 N -0.349 5.349 15 C -0.378 4.378 16 H 0.097 0.903 17 C -0.251 4.251 18 N -0.596 5.596 19 Si 0.808 3.192 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.194 1.194 23 C 0.002 3.998 24 H 0.105 0.895 25 H 0.126 0.874 26 H 0.087 0.913 27 H 0.244 0.756 28 H 0.095 0.905 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.036 0.964 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.093 19.799 -4.958 20.644 hybrid contribution -0.894 -1.296 -0.248 1.594 sum -3.987 18.503 -5.205 19.630 Atomic orbital electron populations 1.20693 0.85789 1.04896 1.04117 1.21424 1.01206 0.90546 1.05038 1.23953 0.88327 0.99024 0.88597 1.69075 1.10894 1.27855 1.14791 1.24031 0.99849 0.84967 0.98010 1.87008 0.91721 1.97316 1.14439 1.68697 1.09374 1.31642 1.18762 1.20611 0.87650 0.87745 0.89619 1.86231 1.34619 1.11721 1.85951 1.23470 0.94312 0.81447 0.97373 0.89544 1.22938 1.00155 0.91847 1.00871 1.20967 0.94124 0.92258 0.86554 1.44572 1.60529 1.03637 1.26146 1.19410 1.23267 0.89204 1.05951 0.90318 1.25662 1.01913 0.97524 1.00008 1.70148 1.51358 1.09697 1.28355 0.85042 0.77818 0.78134 0.78226 1.21123 1.21700 1.19402 1.21825 0.97869 0.85263 0.94838 0.89479 0.87361 0.91308 0.75621 0.90471 0.88841 0.89520 0.96438 0.95743 0.94031 0.95637 0.94566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 9.85 71.23 0.70 -0.62 16 2 C -0.18 -3.68 5.93 -19.58 -0.12 -3.79 16 3 C 0.17 2.95 10.99 84.61 0.93 3.88 16 4 N -0.51 -12.38 10.40 -196.65 -2.04 -14.43 16 5 C 0.31 8.94 7.91 180.43 1.43 10.37 16 6 S -0.06 -1.47 26.15 -56.49 -1.48 -2.95 16 7 N -0.55 -18.12 8.85 -309.32 -2.74 -20.85 16 8 C 0.33 9.89 7.50 84.84 0.64 10.52 16 9 O -0.28 -9.11 9.12 -88.21 -0.80 -9.91 16 10 C 0.09 3.45 3.25 32.09 0.10 3.55 16 11 H 0.09 3.45 7.20 -2.39 -0.02 3.43 16 12 C -0.12 -4.49 6.70 31.88 0.21 -4.27 16 13 C 0.19 9.29 5.38 86.73 0.47 9.76 16 14 N -0.62 -33.33 3.40 -692.00 -2.35 -35.68 16 15 C -0.25 -14.49 10.26 84.03 0.86 -13.63 16 16 H 0.08 4.44 7.84 -2.91 -0.02 4.41 16 17 C -0.06 -3.32 5.48 84.86 0.47 -2.85 16 18 N -0.95 -57.06 10.36 21.65 0.22 -56.83 16 19 Si 0.98 46.28 29.56 68.60 2.03 48.31 16 20 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 21 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 C 0.13 5.76 6.96 86.86 0.60 6.36 16 24 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.11 0.72 8.10 -2.39 -0.02 0.70 16 26 H 0.07 1.12 7.62 -2.39 -0.02 1.10 16 27 H 0.23 1.62 8.06 -2.91 -0.02 1.60 16 28 H 0.13 2.67 9.55 73.80 0.70 3.37 16 29 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 30 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 31 H 0.02 0.96 7.55 -2.38 -0.02 0.94 16 32 H 0.02 1.35 7.36 -2.39 -0.02 1.33 16 33 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 34 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -70.39 311.67 0.96 -69.43 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: 1.82 Total: 3.63 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 6.30 Total: 19.28 kcal Atomic # 7 Polarization: -120.89 SS G_CDS: -6.91 Total: -127.79 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.80 Total: -9.91 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -1.48 Total: -2.95 kcal Total: -70.39 0.96 -69.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225743078.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.066 kcal (2) G-P(sol) polarization free energy of solvation -70.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds