Wall clock time and date at job start Tue Mar 31 2020 05:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38265 * 120.73698 * 2 1 4 4 N 1.32411 * 119.27005 * 180.02562 * 3 2 1 5 5 C 1.32554 * 120.88688 * 0.02562 * 4 3 2 6 6 S 1.76199 * 119.19680 * 180.02562 * 5 4 3 7 7 N 1.32529 * 121.60699 * 359.73988 * 5 4 3 8 8 C 1.32741 * 120.63889 * 0.52245 * 7 5 4 9 9 O 1.35513 * 120.46221 * 179.76638 * 8 7 5 10 10 C 1.42902 * 116.99974 * 359.72123 * 9 8 7 11 11 H 1.09000 * 110.64515 * 26.85703 * 10 9 8 12 12 C 1.55158 * 110.72296 * 150.00107 * 10 9 8 13 13 C 1.54910 * 101.58302 * 153.86468 * 12 10 9 14 14 N 1.47421 * 104.83090 * 322.99048 * 13 12 10 15 15 C 1.36934 * 125.64568 * 204.09223 * 14 13 12 16 16 H 1.08004 * 120.00035 * 163.19260 * 15 14 13 17 17 C 1.38812 * 120.00404 * 343.18775 * 15 14 13 18 18 N 1.31622 * 119.99728 * 331.97362 * 17 15 14 19 19 Si 1.86799 * 120.00267 * 151.97240 * 17 15 14 20 20 H 1.48506 * 109.46858 * 180.02562 * 19 17 15 21 21 H 1.48494 * 109.47388 * 60.00205 * 19 17 15 22 22 H 1.48501 * 109.46953 * 300.00008 * 19 17 15 23 23 C 1.47021 * 108.70506 * 24.35923 * 14 13 12 24 24 H 1.08999 * 109.47007 * 269.97286 * 1 2 3 25 25 H 1.08998 * 109.47234 * 29.97897 * 1 2 3 26 26 H 1.09003 * 109.46815 * 149.97627 * 1 2 3 27 27 H 1.07996 * 120.36447 * 359.97438 * 3 2 1 28 28 H 1.41001 * 100.00006 * 90.00298 * 6 5 4 29 29 H 1.08994 * 111.00148 * 35.78648 * 12 10 9 30 30 H 1.09000 * 111.00332 * 271.93749 * 12 10 9 31 31 H 1.09000 * 110.36435 * 204.15016 * 13 12 10 32 32 H 1.09005 * 110.36581 * 81.83073 * 13 12 10 33 33 H 0.97004 * 120.00411 * 353.95791 * 18 17 15 34 34 H 1.09002 * 109.88500 * 118.13212 * 23 14 13 35 35 H 1.08999 * 109.87960 * 239.29526 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2137 1.1884 0.0000 4 7 3.5374 1.1545 -0.0005 5 6 4.1885 -0.0001 -0.0015 6 16 5.9504 0.0068 -0.0015 7 7 3.5465 -1.1595 0.0030 8 6 2.2197 -1.1981 -0.0016 9 8 1.5669 -2.3857 -0.0016 10 6 2.3703 -3.5675 -0.0027 11 1 3.3392 -3.3740 0.4574 12 6 1.6400 -4.7284 0.7228 13 6 2.2783 -5.9678 0.0473 14 7 2.4632 -5.5762 -1.3618 15 6 2.5487 -6.4357 -2.4243 16 1 2.4123 -6.0664 -3.4301 17 6 2.8109 -7.7817 -2.2089 18 7 3.4979 -8.1572 -1.1509 19 14 2.1886 -9.0601 -3.4205 20 1 2.5978 -10.4134 -2.9660 21 1 2.7656 -8.7926 -4.7624 22 1 0.7071 -8.9907 -3.4959 23 6 2.5470 -4.1103 -1.4367 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6918 2.1339 -0.0004 28 1 6.1953 0.0064 1.3871 29 1 0.5667 -4.6915 0.5370 30 1 1.8505 -4.7146 1.7922 31 1 1.6089 -6.8252 0.1181 32 1 3.2398 -6.1972 0.5067 33 1 3.8958 -7.4907 -0.5692 34 1 3.5195 -3.8141 -1.8300 35 1 1.7532 -3.7258 -2.0770 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225743079.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:12 Heat of formation + Delta-G solvation = 42.401729 kcal Electronic energy + Delta-G solvation = -19687.721393 eV Core-core repulsion = 16620.698204 eV Total energy + Delta-G solvation = -3067.023189 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.37717 -38.98620 -36.69140 -34.10761 -33.22259 -32.25918 -29.29273 -27.90827 -27.63215 -24.84789 -23.92325 -23.34240 -20.76584 -20.40041 -19.34114 -18.14948 -17.52485 -17.25273 -16.23578 -15.24778 -14.91228 -14.78565 -14.64213 -14.05318 -13.77420 -13.53752 -13.25405 -13.20657 -13.03432 -12.59593 -12.38080 -11.74789 -11.56445 -11.06344 -10.88714 -10.81886 -10.69055 -10.56487 -10.20635 -10.10173 -9.99843 -9.59419 -9.54631 -8.95545 -8.44066 -8.41475 -6.99068 -6.12305 -3.17664 0.30762 0.94920 1.06796 2.21294 2.81032 3.45286 3.50437 3.54060 3.72074 3.82983 4.39394 4.46250 4.58679 4.64165 4.81743 5.05058 5.11993 5.32012 5.37965 5.49112 5.56142 5.59217 5.71745 5.87218 6.01785 6.08878 6.19947 6.44818 6.54812 6.63006 6.85040 6.94043 7.21419 7.64698 7.75594 8.45368 8.97956 9.78024 10.30790 11.20130 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.022793 B = 0.004299 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.128244 B = 6511.488519 C = 7172.618524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.189 4.189 3 C 0.160 3.840 4 N -0.502 5.502 5 C 0.328 3.672 6 S -0.042 6.042 7 N -0.527 5.527 8 C 0.366 3.634 9 O -0.282 6.282 10 C 0.072 3.928 11 H 0.098 0.902 12 C -0.131 4.131 13 C 0.147 3.853 14 N -0.598 5.598 15 C -0.337 4.337 16 H 0.066 0.934 17 C -0.024 4.024 18 N -0.916 5.916 19 Si 1.066 2.934 20 H -0.285 1.285 21 H -0.292 1.292 22 H -0.293 1.293 23 C 0.126 3.874 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.179 0.821 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.031 0.969 33 H 0.268 0.732 34 H 0.033 0.967 35 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.470 18.336 5.859 19.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.195 4.195 3 C -0.006 4.006 4 N -0.222 5.222 5 C -0.051 4.051 6 S 0.111 5.889 7 N -0.258 5.258 8 C 0.176 3.824 9 O -0.184 6.184 10 C 0.016 3.984 11 H 0.116 0.884 12 C -0.169 4.169 13 C 0.021 3.979 14 N -0.327 5.327 15 C -0.465 4.465 16 H 0.084 0.916 17 C -0.225 4.225 18 N -0.556 5.556 19 Si 0.895 3.105 20 H -0.210 1.210 21 H -0.219 1.219 22 H -0.221 1.221 23 C 0.000 4.000 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.196 0.804 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.983 16.500 5.236 17.424 hybrid contribution -1.393 1.600 1.130 2.403 sum -3.376 18.100 6.366 19.482 Atomic orbital electron populations 1.20580 0.88250 1.03898 1.03008 1.21004 0.99577 0.91761 1.07153 1.23141 0.89222 0.97601 0.90604 1.69021 1.09489 1.28641 1.15052 1.23869 0.99337 0.84862 0.96994 1.87069 0.91976 1.97331 1.12475 1.68748 1.08413 1.30520 1.18127 1.20186 0.87334 0.87395 0.87521 1.86308 1.35218 1.11810 1.85075 1.23743 0.94845 0.80663 0.99166 0.88409 1.23038 1.00872 0.94365 0.98632 1.21547 0.97531 0.93836 0.84987 1.44439 1.85567 0.99486 1.03165 1.19748 1.49052 0.91023 0.86665 0.91621 1.25787 0.97727 0.96896 1.02121 1.70794 1.29892 1.37458 1.17479 0.83516 0.76094 0.76238 0.74646 1.21012 1.21932 1.22064 1.21594 0.98868 0.86991 0.92577 0.90588 0.90779 0.90155 0.80433 0.92637 0.90410 0.91102 0.92211 0.95124 0.92027 0.94863 0.95008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 9.85 36.01 0.35 -0.51 16 2 C -0.19 -2.23 5.93 -104.18 -0.62 -2.85 16 3 C 0.16 1.69 10.99 -17.29 -0.19 1.50 16 4 N -0.50 -6.59 10.40 -13.51 -0.14 -6.73 16 5 C 0.33 4.78 7.91 -90.87 -0.72 4.06 16 6 S -0.04 -0.52 26.15 -107.50 -2.81 -3.34 16 7 N -0.53 -8.55 8.75 -13.50 -0.12 -8.67 16 8 C 0.37 5.60 7.50 -16.72 -0.13 5.48 16 9 O -0.28 -4.69 9.03 -18.23 -0.16 -4.85 16 10 C 0.07 1.34 3.25 -24.89 -0.08 1.26 16 11 H 0.10 1.84 6.98 -51.93 -0.36 1.48 16 12 C -0.13 -2.39 6.81 -24.58 -0.17 -2.56 16 13 C 0.15 3.41 5.30 -2.53 -0.01 3.40 16 14 N -0.60 -15.60 3.29 -170.07 -0.56 -16.16 16 15 C -0.34 -9.72 10.02 -15.06 -0.15 -9.88 16 16 H 0.07 1.89 7.97 -52.48 -0.42 1.48 16 17 C -0.02 -0.68 5.09 -17.43 -0.09 -0.77 16 18 N -0.92 -27.72 12.93 55.49 0.72 -27.00 16 19 Si 1.07 25.47 30.00 -169.99 -5.10 20.37 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.13 2.82 7.03 -3.06 -0.02 2.80 16 24 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.46 8.10 -51.93 -0.42 0.04 16 26 H 0.08 0.82 7.62 -51.93 -0.40 0.42 16 27 H 0.18 1.12 8.06 -52.49 -0.42 0.69 16 28 H 0.11 1.11 9.55 96.90 0.93 2.04 16 29 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.49 7.95 -51.93 -0.41 1.08 16 32 H 0.03 0.75 6.81 -51.93 -0.35 0.40 16 33 H 0.27 8.14 6.06 -40.82 -0.25 7.90 16 34 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.72 8.05 -51.93 -0.42 0.31 16 LS Contribution 311.27 15.07 4.69 4.69 Total: -1.00 -32.55 311.27 -8.32 -40.87 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -3.01 Total: -1.11 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -1.82 Total: 1.93 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: -0.10 Total: -58.56 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.16 Total: -4.85 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.10 Total: 20.37 kcal Atomic # 16 Polarization: -0.52 SS G_CDS: -2.81 Total: -3.34 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.55 -8.32 -40.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225743079.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.270 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds