Wall clock time and date at job start Tue Mar 31 2020 05:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38265 * 120.73698 * 2 1 4 4 N 1.32411 * 119.27005 * 180.02562 * 3 2 1 5 5 C 1.32554 * 120.88688 * 0.02562 * 4 3 2 6 6 S 1.76199 * 119.19680 * 180.02562 * 5 4 3 7 7 N 1.32529 * 121.60699 * 359.73988 * 5 4 3 8 8 C 1.32741 * 120.63889 * 0.52245 * 7 5 4 9 9 O 1.35513 * 120.46221 * 179.76638 * 8 7 5 10 10 C 1.42902 * 116.99974 * 359.72123 * 9 8 7 11 11 H 1.09000 * 110.64515 * 26.85703 * 10 9 8 12 12 C 1.55158 * 110.72296 * 150.00107 * 10 9 8 13 13 C 1.54910 * 101.58302 * 153.86468 * 12 10 9 14 14 N 1.47421 * 104.83090 * 322.99048 * 13 12 10 15 15 C 1.36934 * 125.64568 * 204.09223 * 14 13 12 16 16 H 1.08004 * 120.00035 * 163.19260 * 15 14 13 17 17 C 1.38812 * 120.00404 * 343.18775 * 15 14 13 18 18 N 1.31622 * 119.99728 * 331.97362 * 17 15 14 19 19 Si 1.86799 * 120.00267 * 151.97240 * 17 15 14 20 20 H 1.48506 * 109.46858 * 180.02562 * 19 17 15 21 21 H 1.48494 * 109.47388 * 60.00205 * 19 17 15 22 22 H 1.48501 * 109.46953 * 300.00008 * 19 17 15 23 23 C 1.47021 * 108.70506 * 24.35923 * 14 13 12 24 24 H 1.08999 * 109.47007 * 269.97286 * 1 2 3 25 25 H 1.08998 * 109.47234 * 29.97897 * 1 2 3 26 26 H 1.09003 * 109.46815 * 149.97627 * 1 2 3 27 27 H 1.07996 * 120.36447 * 359.97438 * 3 2 1 28 28 H 1.41001 * 100.00006 * 90.00298 * 6 5 4 29 29 H 1.08994 * 111.00148 * 35.78648 * 12 10 9 30 30 H 1.09000 * 111.00332 * 271.93749 * 12 10 9 31 31 H 1.09000 * 110.36435 * 204.15016 * 13 12 10 32 32 H 1.09005 * 110.36581 * 81.83073 * 13 12 10 33 33 H 0.97004 * 120.00411 * 353.95791 * 18 17 15 34 34 H 1.09002 * 109.88500 * 118.13212 * 23 14 13 35 35 H 1.08999 * 109.87960 * 239.29526 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2137 1.1884 0.0000 4 7 3.5374 1.1545 -0.0005 5 6 4.1885 -0.0001 -0.0015 6 16 5.9504 0.0068 -0.0015 7 7 3.5465 -1.1595 0.0030 8 6 2.2197 -1.1981 -0.0016 9 8 1.5669 -2.3857 -0.0016 10 6 2.3703 -3.5675 -0.0027 11 1 3.3392 -3.3740 0.4574 12 6 1.6400 -4.7284 0.7228 13 6 2.2783 -5.9678 0.0473 14 7 2.4632 -5.5762 -1.3618 15 6 2.5487 -6.4357 -2.4243 16 1 2.4123 -6.0664 -3.4301 17 6 2.8109 -7.7817 -2.2089 18 7 3.4979 -8.1572 -1.1509 19 14 2.1886 -9.0601 -3.4205 20 1 2.5978 -10.4134 -2.9660 21 1 2.7656 -8.7926 -4.7624 22 1 0.7071 -8.9907 -3.4959 23 6 2.5470 -4.1103 -1.4367 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.6918 2.1339 -0.0004 28 1 6.1953 0.0064 1.3871 29 1 0.5667 -4.6915 0.5370 30 1 1.8505 -4.7146 1.7922 31 1 1.6089 -6.8252 0.1181 32 1 3.2398 -6.1972 0.5067 33 1 3.8958 -7.4907 -0.5692 34 1 3.5195 -3.8141 -1.8300 35 1 1.7532 -3.7258 -2.0770 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225743079.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:12 Heat of formation + Delta-G solvation = 19.869267 kcal Electronic energy + Delta-G solvation = -19688.698474 eV Core-core repulsion = 16620.698204 eV Total energy + Delta-G solvation = -3068.000270 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.44100 -40.36699 -38.35574 -35.07574 -34.75176 -33.80537 -31.18203 -29.40175 -28.73032 -26.60468 -25.33454 -24.29001 -22.34088 -22.20864 -20.48782 -19.73036 -19.21927 -18.31878 -17.43526 -16.65819 -16.30369 -16.19982 -15.72754 -15.55178 -15.23228 -15.10974 -14.74410 -14.57437 -14.16573 -13.98669 -13.42258 -13.19522 -12.77065 -12.68432 -12.58382 -12.50206 -12.29651 -11.94367 -11.89247 -11.68829 -11.63221 -11.33477 -10.65157 -10.58934 -9.98053 -9.39628 -9.13332 -8.39678 -5.42581 -0.66489 -0.05935 0.08187 1.32091 1.55833 1.59121 1.65430 1.84969 2.44585 2.60114 2.80756 3.12003 3.36868 3.40847 3.47293 3.57335 3.73141 3.80279 3.95741 4.01003 4.28209 4.41701 4.68547 4.70652 4.75473 4.77869 4.90536 4.92148 4.95213 5.13135 5.29509 5.57860 5.58626 5.90548 6.23763 6.62431 6.79525 7.61100 8.16462 8.91936 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.022793 B = 0.004299 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.128244 B = 6511.488519 C = 7172.618524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.177 4.177 3 C 0.168 3.832 4 N -0.505 5.505 5 C 0.310 3.690 6 S -0.057 6.057 7 N -0.555 5.555 8 C 0.332 3.668 9 O -0.282 6.282 10 C 0.093 3.907 11 H 0.094 0.906 12 C -0.112 4.112 13 C 0.148 3.852 14 N -0.620 5.620 15 C -0.355 4.355 16 H 0.057 0.943 17 C -0.071 4.071 18 N -0.939 5.939 19 Si 1.119 2.881 20 H -0.287 1.287 21 H -0.275 1.275 22 H -0.278 1.278 23 C 0.127 3.873 24 H 0.092 0.908 25 H 0.107 0.893 26 H 0.063 0.937 27 H 0.228 0.772 28 H 0.133 0.867 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.037 0.963 32 H 0.014 0.986 33 H 0.255 0.745 34 H 0.014 0.986 35 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.138 20.308 6.256 21.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.182 4.182 3 C 0.003 3.997 4 N -0.225 5.225 5 C -0.068 4.068 6 S 0.096 5.904 7 N -0.287 5.287 8 C 0.142 3.858 9 O -0.185 6.185 10 C 0.036 3.964 11 H 0.112 0.888 12 C -0.150 4.150 13 C 0.023 3.977 14 N -0.348 5.348 15 C -0.483 4.483 16 H 0.075 0.925 17 C -0.267 4.267 18 N -0.581 5.581 19 Si 0.942 3.058 20 H -0.213 1.213 21 H -0.201 1.201 22 H -0.204 1.204 23 C 0.001 3.999 24 H 0.111 0.889 25 H 0.125 0.875 26 H 0.082 0.918 27 H 0.245 0.755 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.123 0.877 31 H 0.055 0.945 32 H 0.032 0.968 33 H 0.066 0.934 34 H 0.032 0.968 35 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.648 18.527 5.642 19.708 hybrid contribution -0.859 1.158 1.016 1.764 sum -4.507 19.685 6.659 21.264 Atomic orbital electron populations 1.20696 0.85813 1.04732 1.04273 1.21432 1.01211 0.90559 1.04975 1.23972 0.88323 0.99014 0.88439 1.69079 1.10882 1.27838 1.14710 1.24054 0.99918 0.84923 0.97911 1.87029 0.91497 1.97310 1.14592 1.68647 1.09318 1.31728 1.18967 1.20610 0.87706 0.87736 0.89708 1.86278 1.34590 1.11688 1.85974 1.23243 0.95187 0.81830 0.96105 0.88767 1.22894 1.00846 0.91316 0.99926 1.21479 0.96601 0.95485 0.84154 1.44699 1.85568 1.00800 1.03755 1.20007 1.48907 0.92062 0.87372 0.92465 1.27262 0.97237 0.99032 1.03193 1.70909 1.31604 1.37033 1.18530 0.82821 0.76320 0.73422 0.73209 1.21301 1.20100 1.20413 1.21601 0.97523 0.85373 0.95405 0.88914 0.87459 0.91801 0.75531 0.90307 0.89398 0.87735 0.94497 0.96802 0.93435 0.96840 0.95394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 9.85 71.24 0.70 -0.64 16 2 C -0.18 -3.66 5.93 -19.58 -0.12 -3.78 16 3 C 0.17 2.94 10.99 84.61 0.93 3.87 16 4 N -0.51 -12.18 10.40 -196.64 -2.04 -14.23 16 5 C 0.31 8.79 7.91 180.43 1.43 10.22 16 6 S -0.06 -1.42 26.15 -56.49 -1.48 -2.89 16 7 N -0.56 -17.87 8.75 -309.33 -2.71 -20.57 16 8 C 0.33 9.79 7.50 84.84 0.64 10.43 16 9 O -0.28 -9.13 9.03 -88.15 -0.80 -9.93 16 10 C 0.09 3.47 3.25 31.79 0.10 3.58 16 11 H 0.09 3.59 6.98 -2.39 -0.02 3.57 16 12 C -0.11 -4.00 6.81 31.99 0.22 -3.78 16 13 C 0.15 7.07 5.30 86.86 0.46 7.53 16 14 N -0.62 -33.31 3.29 -691.97 -2.28 -35.58 16 15 C -0.36 -21.02 10.02 84.03 0.84 -20.18 16 16 H 0.06 3.39 7.97 -2.91 -0.02 3.37 16 17 C -0.07 -4.15 5.09 84.86 0.43 -3.72 16 18 N -0.94 -58.30 12.93 21.65 0.28 -58.02 16 19 Si 1.12 51.70 30.00 68.60 2.06 53.76 16 20 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 21 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 23 C 0.13 5.84 7.03 86.73 0.61 6.45 16 24 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.11 0.79 8.10 -2.39 -0.02 0.77 16 26 H 0.06 1.14 7.62 -2.39 -0.02 1.12 16 27 H 0.23 1.58 8.06 -2.91 -0.02 1.56 16 28 H 0.13 2.57 9.55 73.80 0.70 3.28 16 29 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 30 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 31 H 0.04 1.90 7.95 -2.39 -0.02 1.88 16 32 H 0.01 0.72 6.81 -2.38 -0.02 0.70 16 33 H 0.26 16.12 6.06 -92.71 -0.56 15.56 16 34 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.03 1.30 8.05 -2.39 -0.02 1.28 16 Total: -1.00 -73.16 311.27 1.31 -71.85 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: 2.03 Total: 5.63 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 6.24 Total: 9.98 kcal Atomic # 7 Polarization: -121.65 SS G_CDS: -6.75 Total: -128.40 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -0.80 Total: -9.93 kcal Atomic # 14 Polarization: 51.70 SS G_CDS: 2.06 Total: 53.76 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -1.48 Total: -2.89 kcal Total: -73.16 1.31 -71.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225743079.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.716 kcal (2) G-P(sol) polarization free energy of solvation -73.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds