Wall clock time and date at job start Tue Mar 31 2020 05:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38259 * 119.95197 * 2 1 4 4 C 1.38135 * 120.07183 * 179.97438 * 3 2 1 5 5 C 1.38761 * 119.96860 * 0.02562 * 4 3 2 6 6 O 1.35892 * 120.04995 * 179.97438 * 5 4 3 7 7 C 1.42903 * 117.00157 * 175.37549 * 6 5 4 8 8 H 1.09001 * 110.63858 * 328.51662 * 7 6 5 9 9 C 1.55156 * 110.72131 * 205.37482 * 7 6 5 10 10 C 1.54914 * 101.58091 * 206.13838 * 9 7 6 11 11 N 1.47415 * 104.83100 * 37.00613 * 10 9 7 12 12 C 1.36942 * 125.64558 * 155.84277 * 11 10 9 13 13 H 1.08004 * 119.99957 * 332.54356 * 12 11 10 14 14 C 1.38814 * 120.00117 * 152.55443 * 12 11 10 15 15 N 1.31615 * 119.99792 * 160.88446 * 14 12 11 16 16 Si 1.86800 * 119.99801 * 340.87606 * 14 12 11 17 17 H 1.48497 * 109.46931 * 84.79968 * 16 14 12 18 18 H 1.48502 * 109.46822 * 204.79859 * 16 14 12 19 19 H 1.48502 * 109.47123 * 324.80045 * 16 14 12 20 20 C 1.47318 * 108.74064 * 335.71533 * 11 10 9 21 21 C 1.38696 * 119.90021 * 359.72429 * 5 4 3 22 22 C 1.38283 * 119.92867 * 0.55094 * 21 5 4 23 23 Cl 1.73597 * 119.98135 * 179.72602 * 22 21 5 24 24 H 1.08998 * 109.46948 * 270.01459 * 1 2 3 25 25 H 1.08993 * 109.47644 * 30.02012 * 1 2 3 26 26 H 1.09003 * 109.46899 * 150.02471 * 1 2 3 27 27 H 1.08002 * 119.96758 * 0.02562 * 3 2 1 28 28 H 1.07994 * 120.01326 * 180.02562 * 4 3 2 29 29 H 1.09001 * 111.00598 * 324.20708 * 9 7 6 30 30 H 1.08993 * 111.00588 * 88.05907 * 9 7 6 31 31 H 1.08999 * 110.36246 * 155.84904 * 10 9 7 32 32 H 1.08999 * 110.36072 * 278.05851 * 10 9 7 33 33 H 0.97007 * 119.99883 * 179.97438 * 15 14 12 34 34 H 1.08998 * 110.06530 * 241.87044 * 20 11 10 35 35 H 1.09007 * 109.84814 * 120.60829 * 20 11 10 36 36 H 1.07998 * 120.03512 * 180.30020 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1979 0.0000 4 6 3.5786 1.2008 0.0005 5 6 4.2743 0.0002 0.0005 6 8 5.6332 0.0011 0.0005 7 6 6.2829 -1.2676 0.1032 8 1 5.6827 -1.9599 0.6936 9 6 7.7003 -1.1107 0.7145 10 6 8.4310 -2.3434 0.1260 11 7 7.8986 -2.4801 -1.2418 12 6 8.5342 -3.0942 -2.2879 13 1 9.6132 -3.1336 -2.3161 14 6 7.7918 -3.6659 -3.3120 15 7 8.3566 -3.9148 -4.4745 16 14 5.9911 -4.0821 -3.0403 17 1 5.1607 -2.8781 -3.2968 18 1 5.5885 -5.1683 -3.9694 19 1 5.7929 -4.5308 -1.6386 20 6 6.5683 -1.8497 -1.2972 21 6 3.5806 -1.2008 0.0058 22 6 2.1978 -1.1989 -0.0005 23 17 1.3282 -2.7013 -0.0012 24 1 -0.3633 0.0003 1.0277 25 1 -0.3634 0.8897 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6560 2.1325 0.0004 28 1 4.1169 2.1371 0.0010 29 1 8.1685 -0.1839 0.3828 30 1 7.6641 -1.1605 1.8027 31 1 9.5066 -2.1695 0.0989 32 1 8.2060 -3.2337 0.7133 33 1 7.8379 -4.3147 -5.1901 34 1 5.8125 -2.5930 -1.5509 35 1 6.5682 -1.0501 -2.0381 36 1 4.1198 -2.1365 0.0107 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225863109.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:41 Heat of formation + Delta-G solvation = -9.234785 kcal Electronic energy + Delta-G solvation = -19828.721280 eV Core-core repulsion = 16725.122507 eV Total energy + Delta-G solvation = -3103.598773 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.54216 -39.70007 -38.15843 -37.32468 -34.59677 -33.08251 -32.04119 -31.50173 -29.74911 -27.45369 -26.24476 -24.31081 -22.96059 -22.18062 -21.71602 -19.56980 -19.14358 -17.97843 -17.37016 -16.50917 -16.37791 -16.04508 -15.67153 -15.35145 -15.15012 -14.83799 -14.73558 -14.38321 -14.25531 -13.79555 -13.31747 -13.19717 -13.07781 -12.95308 -12.85272 -12.66215 -12.52043 -12.29285 -12.13033 -11.90864 -11.83612 -11.55725 -11.31998 -10.84382 -9.98563 -9.16124 -9.07953 -8.29824 -5.62903 0.04250 0.21523 1.00675 1.19342 1.25264 1.34645 1.97874 2.29550 2.50890 2.93034 3.27153 3.49621 3.60705 3.66887 3.79731 3.90759 3.94365 4.11969 4.31146 4.32782 4.51802 4.54571 4.63143 4.68946 4.77775 4.82067 4.89640 4.93446 5.05842 5.10573 5.23237 5.26080 5.38165 5.64204 5.65119 6.02475 6.26112 6.65051 7.41087 7.99954 8.90559 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.018410 B = 0.005889 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.513365 B = 4753.546356 C = 5640.218727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.119 4.119 3 C -0.060 4.060 4 C -0.144 4.144 5 C 0.118 3.882 6 O -0.302 6.302 7 C 0.078 3.922 8 H 0.095 0.905 9 C -0.106 4.106 10 C 0.123 3.877 11 N -0.625 5.625 12 C -0.239 4.239 13 H 0.066 0.934 14 C -0.024 4.024 15 N -0.949 5.949 16 Si 0.941 3.059 17 H -0.283 1.283 18 H -0.302 1.302 19 H -0.268 1.268 20 C 0.099 3.901 21 C -0.220 4.220 22 C -0.014 4.014 23 Cl -0.070 7.070 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.063 0.937 27 H 0.179 0.821 28 H 0.157 0.843 29 H 0.085 0.915 30 H 0.119 0.881 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.265 0.735 34 H 0.015 0.985 35 H 0.028 0.972 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.289 11.164 14.539 24.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.120 4.120 3 C -0.078 4.078 4 C -0.163 4.163 5 C 0.073 3.927 6 O -0.215 6.215 7 C 0.021 3.979 8 H 0.113 0.887 9 C -0.144 4.144 10 C -0.001 4.001 11 N -0.353 5.353 12 C -0.367 4.367 13 H 0.084 0.916 14 C -0.220 4.220 15 N -0.595 5.595 16 Si 0.772 3.228 17 H -0.210 1.210 18 H -0.230 1.230 19 H -0.194 1.194 20 C -0.026 4.026 21 C -0.239 4.239 22 C -0.040 4.040 23 Cl -0.041 7.041 24 H 0.104 0.896 25 H 0.111 0.889 26 H 0.082 0.918 27 H 0.196 0.804 28 H 0.175 0.825 29 H 0.104 0.896 30 H 0.137 0.863 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.032 0.968 35 H 0.046 0.954 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.190 11.082 14.327 24.294 hybrid contribution -0.477 -1.299 -0.707 1.554 sum -16.667 9.783 13.620 23.643 Atomic orbital electron populations 1.20856 0.88142 1.04091 1.03693 1.20076 0.98375 0.90688 1.02821 1.21239 0.92294 0.98368 0.95879 1.20899 0.94572 0.96266 1.04517 1.19241 0.82745 0.94227 0.96509 1.86133 1.16122 1.31563 1.87670 1.23466 0.95460 0.83783 0.95178 0.88739 1.22852 0.90712 0.99203 1.01642 1.21940 0.98323 0.95915 0.83890 1.44787 1.17472 1.65264 1.07812 1.18631 0.91399 1.28645 0.98058 0.91613 1.25735 1.01387 0.99115 0.95804 1.69906 1.38573 1.47940 1.03080 0.85975 0.82383 0.77212 0.77233 1.20977 1.23036 1.19362 1.22154 0.88283 0.95073 0.97138 1.21197 0.94039 0.98480 1.10229 1.20715 0.91267 0.87678 1.04365 1.98351 1.76343 1.32626 1.96789 0.89641 0.88917 0.91802 0.80403 0.82508 0.89631 0.86307 0.91892 0.93940 0.92612 0.96753 0.95391 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.62 9.61 71.24 0.68 -0.93 16 2 C -0.12 -2.46 5.88 -19.83 -0.12 -2.58 16 3 C -0.06 -1.06 9.69 22.25 0.22 -0.85 16 4 C -0.14 -3.20 9.99 22.37 0.22 -2.98 16 5 C 0.12 3.47 6.68 22.50 0.15 3.62 16 6 O -0.30 -9.75 9.86 -92.33 -0.91 -10.66 16 7 C 0.08 2.65 2.75 31.78 0.09 2.73 16 8 H 0.09 2.96 6.10 -2.39 -0.01 2.95 16 9 C -0.11 -3.10 6.81 31.99 0.22 -2.88 16 10 C 0.12 4.56 7.23 86.86 0.63 5.19 16 11 N -0.63 -30.67 3.10 -691.24 -2.14 -32.81 16 12 C -0.24 -14.02 10.55 84.03 0.89 -13.14 16 13 H 0.07 4.12 8.06 -2.91 -0.02 4.09 16 14 C -0.02 -1.49 5.45 84.86 0.46 -1.02 16 15 N -0.95 -61.02 13.97 21.65 0.30 -60.72 16 16 Si 0.94 49.45 24.47 68.60 1.68 51.13 16 17 H -0.28 -14.60 6.85 99.48 0.68 -13.92 16 18 H -0.30 -15.78 7.11 99.48 0.71 -15.07 16 19 H -0.27 -13.48 6.99 99.48 0.70 -12.78 16 20 C 0.10 4.45 5.30 86.67 0.46 4.91 16 21 C -0.22 -6.74 8.74 22.39 0.20 -6.55 16 22 C -0.01 -0.36 6.31 22.31 0.14 -0.22 16 23 Cl -0.07 -1.81 27.29 -2.72 -0.07 -1.89 16 24 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.09 0.93 8.08 -2.39 -0.02 0.91 16 26 H 0.06 1.04 6.89 -2.39 -0.02 1.03 16 27 H 0.18 1.67 8.06 -2.91 -0.02 1.64 16 28 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 29 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.26 16.15 8.31 -92.70 -0.77 15.38 16 34 H 0.02 0.72 3.23 -2.39 -0.01 0.71 16 35 H 0.03 1.38 8.06 -2.38 -0.02 1.36 16 36 H 0.12 4.08 5.76 -2.91 -0.02 4.06 16 Total: -1.00 -70.97 305.96 4.14 -66.83 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: 1.05 Total: 2.82 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 4.24 Total: -14.70 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -1.84 Total: -93.53 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: -0.91 Total: -10.66 kcal Atomic # 14 Polarization: 49.45 SS G_CDS: 1.68 Total: 51.13 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -0.07 Total: -1.89 kcal Total: -70.97 4.14 -66.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225863109.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.592 kcal (2) G-P(sol) polarization free energy of solvation -70.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds