Wall clock time and date at job start Tue Mar 31 2020 05:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38196 * 120.02405 * 2 1 4 4 C 1.38232 * 120.07889 * 180.30392 * 3 2 1 5 5 C 1.38292 * 120.11584 * 359.67283 * 4 3 2 6 6 C 1.38212 * 120.04584 * 0.04958 * 5 4 3 7 7 Cl 1.73597 * 120.03807 * 180.02562 * 6 5 4 8 8 C 1.38660 * 120.02048 * 179.72449 * 2 1 3 9 9 O 1.35929 * 120.06007 * 359.97438 * 8 2 1 10 10 C 1.42897 * 117.00017 * 269.72475 * 9 8 2 11 11 H 1.09004 * 110.63852 * 26.86232 * 10 9 8 12 12 C 1.55160 * 110.71769 * 150.00111 * 10 9 8 13 13 C 1.54907 * 101.58125 * 154.04805 * 12 10 9 14 14 N 1.47423 * 104.82891 * 322.98650 * 13 12 10 15 15 C 1.36936 * 125.64750 * 204.09113 * 14 13 12 16 16 H 1.08005 * 120.00047 * 6.76202 * 15 14 13 17 17 C 1.38813 * 120.00010 * 186.75661 * 15 14 13 18 18 N 1.31615 * 120.00386 * 7.43960 * 17 15 14 19 19 Si 1.86808 * 119.99961 * 187.44313 * 17 15 14 20 20 H 1.48507 * 109.46819 * 265.01667 * 19 17 15 21 21 H 1.48499 * 109.47190 * 25.01424 * 19 17 15 22 22 H 1.48497 * 109.47340 * 145.01960 * 19 17 15 23 23 C 1.47023 * 108.70538 * 24.35960 * 14 13 12 24 24 H 1.09005 * 109.46525 * 270.28108 * 1 2 3 25 25 H 1.08997 * 109.47200 * 30.27360 * 1 2 3 26 26 H 1.08997 * 109.47252 * 150.27848 * 1 2 3 27 27 H 1.08003 * 119.95772 * 359.97438 * 3 2 1 28 28 H 1.07998 * 119.94040 * 179.70044 * 4 3 2 29 29 H 1.08002 * 119.97377 * 180.02562 * 5 4 3 30 30 H 1.08994 * 111.00367 * 35.96768 * 12 10 9 31 31 H 1.09006 * 111.00254 * 272.11808 * 12 10 9 32 32 H 1.09002 * 110.36273 * 204.15364 * 13 12 10 33 33 H 1.08994 * 110.46235 * 81.87751 * 13 12 10 34 34 H 0.96995 * 120.00434 * 180.02562 * 18 17 15 35 35 H 1.09006 * 109.88085 * 118.12446 * 23 14 13 36 36 H 1.09001 * 109.88106 * 239.29106 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1965 0.0000 4 6 3.5808 1.1979 -0.0063 5 6 4.2758 0.0023 -0.0059 6 6 3.5893 -1.1973 -0.0001 7 17 4.4620 -2.6979 0.0012 8 6 2.2007 -1.2006 0.0058 9 8 1.5227 -2.3787 0.0120 10 6 1.2049 -2.9376 1.2881 11 1 1.1263 -2.1541 2.0419 12 6 -0.1072 -3.7625 1.2147 13 6 0.0921 -4.7677 2.3764 14 7 1.5289 -5.0964 2.3486 15 6 2.0955 -6.2409 2.8430 16 1 1.4674 -7.0428 3.2020 17 6 3.4770 -6.3703 2.8825 18 7 4.2432 -5.3427 2.5839 19 14 4.2488 -8.0033 3.3595 20 1 4.5623 -7.9973 4.8111 21 1 3.2987 -9.1053 3.0628 22 1 5.4990 -8.2052 2.5840 23 6 2.2536 -3.9891 1.7081 24 1 -0.3632 0.0050 1.0277 25 1 -0.3633 0.8875 -0.5181 26 1 -0.3633 -0.8924 -0.5095 27 1 1.6582 2.1317 -0.0004 28 1 4.1189 2.1342 -0.0112 29 1 5.3558 0.0060 -0.0104 30 1 -0.1900 -4.2806 0.2594 31 1 -0.9770 -3.1294 1.3908 32 1 -0.5054 -5.6640 2.2091 33 1 -0.1736 -4.3078 3.3281 34 1 5.2085 -5.4332 2.6112 35 1 2.9592 -3.5505 2.4139 36 1 2.7841 -4.3531 0.8282 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226388396.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:31 Heat of formation + Delta-G solvation = 7.971315 kcal Electronic energy + Delta-G solvation = -20255.924370 eV Core-core repulsion = 17153.071709 eV Total energy + Delta-G solvation = -3102.852661 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.93543 -37.80325 -35.94699 -35.86295 -32.50655 -32.25710 -29.92268 -28.75991 -27.34136 -26.75396 -24.37211 -22.39559 -21.55892 -20.30101 -20.03707 -17.64995 -16.88130 -16.00170 -15.90960 -15.17206 -14.87517 -14.28265 -13.90057 -13.59446 -13.31192 -12.83929 -12.53460 -12.49046 -12.35455 -12.26662 -11.88362 -11.71505 -11.31891 -11.13913 -11.04120 -10.87591 -10.77111 -10.59200 -10.29422 -9.90797 -9.76924 -9.61043 -9.07443 -8.56632 -8.52270 -8.29768 -6.75879 -5.62708 -2.99460 1.22204 1.27583 2.65527 3.43284 3.47923 3.49767 3.51023 4.14374 4.55408 4.81414 4.88631 5.22868 5.30603 5.36127 5.40843 5.49183 5.54715 5.60423 5.69153 5.75583 5.82156 5.86548 6.10812 6.15460 6.27748 6.34047 6.36413 6.48421 6.54533 6.63398 6.74281 6.90736 7.48798 7.65593 7.88088 8.04932 8.31991 9.25918 9.87578 10.53082 11.45727 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.021908 B = 0.006193 C = 0.005029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.745064 B = 4519.989463 C = 5566.681618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.098 4.098 3 C -0.114 4.114 4 C -0.118 4.118 5 C -0.111 4.111 6 C -0.055 4.055 7 Cl -0.020 7.020 8 C 0.114 3.886 9 O -0.319 6.319 10 C 0.067 3.933 11 H 0.059 0.941 12 C -0.127 4.127 13 C 0.134 3.866 14 N -0.604 5.604 15 C -0.231 4.231 16 H 0.077 0.923 17 C -0.005 4.005 18 N -0.909 5.909 19 Si 0.908 3.092 20 H -0.290 1.290 21 H -0.282 1.282 22 H -0.291 1.291 23 C 0.159 3.841 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.127 0.873 28 H 0.128 0.872 29 H 0.133 0.867 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.019 0.981 34 H 0.250 0.750 35 H 0.063 0.937 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.521 13.823 -5.720 15.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.099 4.099 3 C -0.132 4.132 4 C -0.137 4.137 5 C -0.130 4.130 6 C -0.082 4.082 7 Cl 0.009 6.991 8 C 0.068 3.932 9 O -0.236 6.236 10 C 0.011 3.989 11 H 0.077 0.923 12 C -0.165 4.165 13 C 0.007 3.993 14 N -0.331 5.331 15 C -0.359 4.359 16 H 0.095 0.905 17 C -0.202 4.202 18 N -0.556 5.556 19 Si 0.738 3.262 20 H -0.218 1.218 21 H -0.207 1.207 22 H -0.217 1.217 23 C 0.034 3.966 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.150 0.850 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.036 0.964 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.289 13.478 -5.842 15.303 hybrid contribution 0.736 -0.810 0.464 1.189 sum -3.553 12.668 -5.378 14.213 Atomic orbital electron populations 1.20688 0.90346 1.03144 1.02478 1.20169 0.96929 0.91907 1.00913 1.20944 0.94144 0.97086 1.01047 1.21032 0.94158 0.97515 1.00954 1.20995 1.00389 0.90535 1.01072 1.21690 0.92475 0.89900 1.04157 1.98484 1.75182 1.29222 1.96185 1.18328 0.88351 0.86410 1.00071 1.86015 1.73581 1.33733 1.30258 1.23916 0.97430 0.95587 0.81935 0.92287 1.22863 0.95099 0.97839 1.00719 1.21545 0.88026 0.95469 0.94218 1.44399 1.00371 1.19075 1.69288 1.19009 0.89890 0.91871 1.35166 0.90500 1.24801 0.96082 0.97577 1.01758 1.69964 1.03338 1.28012 1.54268 0.86169 0.78840 0.83372 0.77769 1.21753 1.20723 1.21749 1.21781 0.90862 0.86251 0.97739 0.91211 0.91562 0.90524 0.85543 0.85367 0.84953 0.90516 0.91773 0.93754 0.96375 0.93932 0.91951 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 9.79 36.01 0.35 -0.92 16 2 C -0.10 -1.38 5.89 -104.48 -0.62 -2.00 16 3 C -0.11 -1.34 9.70 -39.60 -0.38 -1.73 16 4 C -0.12 -1.38 10.04 -39.56 -0.40 -1.78 16 5 C -0.11 -1.56 9.83 -39.57 -0.39 -1.94 16 6 C -0.05 -0.95 6.33 -39.36 -0.25 -1.20 16 7 Cl -0.02 -0.40 25.65 -51.86 -1.33 -1.73 16 8 C 0.11 1.96 5.56 -39.20 -0.22 1.75 16 9 O -0.32 -6.15 8.32 -19.52 -0.16 -6.31 16 10 C 0.07 1.34 3.49 -24.89 -0.09 1.26 16 11 H 0.06 1.15 7.92 -51.93 -0.41 0.74 16 12 C -0.13 -2.31 6.81 -24.58 -0.17 -2.47 16 13 C 0.13 2.82 7.23 -2.53 -0.02 2.80 16 14 N -0.60 -15.82 3.39 -170.07 -0.58 -16.40 16 15 C -0.23 -6.54 10.26 -15.06 -0.15 -6.70 16 16 H 0.08 2.10 7.84 -52.48 -0.41 1.69 16 17 C -0.01 -0.15 5.45 -17.43 -0.09 -0.24 16 18 N -0.91 -26.56 10.48 55.49 0.58 -25.98 16 19 Si 0.91 22.41 29.56 -169.99 -5.02 17.39 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 C 0.16 3.95 3.92 -3.06 -0.01 3.94 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 26 H 0.08 0.96 7.53 -51.93 -0.39 0.57 16 27 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 28 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 29 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.06 1.74 6.99 -51.93 -0.36 1.38 16 36 H 0.05 1.49 6.30 -51.93 -0.33 1.16 16 LS Contribution 310.90 15.07 4.69 4.69 Total: -1.00 -31.10 310.90 -9.10 -40.20 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -4.84 Total: -2.62 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -2.43 Total: -9.23 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.00 Total: -42.38 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.16 Total: -6.31 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.33 Total: -1.73 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.10 -9.10 -40.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226388396.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.175 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds