Wall clock time and date at job start Tue Mar 31 2020 05:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38261 * 120.36520 * 2 1 4 4 C 1.39409 * 118.51451 * 180.02562 * 3 2 1 5 5 O 1.35513 * 120.45605 * 179.97438 * 4 3 2 6 6 C 1.42903 * 116.99915 * 180.02562 * 5 4 3 7 7 H 1.09002 * 110.88512 * 330.69900 * 6 5 4 8 8 C 1.55157 * 111.03704 * 206.79648 * 6 5 4 9 9 C 1.54332 * 102.94104 * 206.40796 * 8 6 5 10 10 N 1.47019 * 107.26809 * 22.19421 * 9 8 6 11 11 C 1.36946 * 125.64345 * 181.10024 * 10 9 8 12 12 H 1.08001 * 119.99804 * 179.97438 * 11 10 9 13 13 C 1.38808 * 119.99993 * 359.95246 * 11 10 9 14 14 N 1.31624 * 119.99990 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99877 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47101 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47121 * 119.99842 * 15 13 11 18 18 H 1.48498 * 109.46788 * 239.99784 * 15 13 11 19 19 C 1.47418 * 108.70625 * 1.05636 * 10 9 8 20 20 N 1.32739 * 119.07944 * 0.25460 * 4 3 2 21 21 C 1.32520 * 120.63715 * 359.48735 * 20 4 3 22 22 S 1.76208 * 119.19338 * 180.24195 * 21 20 4 23 23 N 1.32417 * 120.36122 * 180.02562 * 2 1 3 24 24 H 1.09007 * 109.46966 * 89.99888 * 1 2 3 25 25 H 1.09003 * 109.47229 * 210.00007 * 1 2 3 26 26 H 1.08995 * 109.47201 * 330.00338 * 1 2 3 27 27 H 1.08001 * 120.73733 * 0.04400 * 3 2 1 28 28 H 1.09000 * 110.71794 * 324.77037 * 8 6 5 29 29 H 1.08996 * 110.72326 * 88.04023 * 8 6 5 30 30 H 1.08993 * 109.88239 * 262.77257 * 9 8 6 31 31 H 1.09003 * 110.01003 * 141.68082 * 9 8 6 32 32 H 0.97002 * 119.99693 * 180.02562 * 14 13 11 33 33 H 1.09003 * 110.36673 * 217.03608 * 19 10 9 34 34 H 1.09000 * 110.46196 * 94.76525 * 19 10 9 35 35 H 1.40994 * 99.99932 * 270.27489 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1929 0.0000 4 6 3.5993 1.1479 -0.0005 5 8 4.3236 2.2933 -0.0011 6 6 5.7464 2.1611 -0.0022 7 1 6.0516 1.2408 0.4959 8 6 6.4211 3.3967 0.6502 9 6 7.8107 3.4261 -0.0206 10 7 7.6999 2.6868 -1.2866 11 6 8.7203 2.4636 -2.1723 12 1 8.5363 1.9058 -3.0786 13 6 9.9909 2.9546 -1.9054 14 7 10.2149 3.6352 -0.8013 15 14 11.3825 2.6507 -3.1139 16 1 10.8738 1.8663 -4.2676 17 1 11.9135 3.9515 -3.5948 18 1 12.4667 1.8923 -2.4397 19 6 6.3089 2.2247 -1.4441 20 7 4.2066 -0.0324 -0.0062 21 6 3.5018 -1.1546 -0.0011 22 16 4.3473 -2.7005 -0.0024 23 7 2.1763 -1.1426 -0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6840 2.1385 0.0007 28 1 5.8637 4.3053 0.4227 29 1 6.5157 3.2606 1.7275 30 1 8.5448 2.9458 0.6262 31 1 8.1081 4.4561 -0.2177 32 1 11.1028 3.9786 -0.6150 33 1 6.2872 1.2366 -1.9038 34 1 5.7375 2.9336 -2.0433 35 1 4.4642 -2.9145 -1.3911 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226798525.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:51 Heat of formation + Delta-G solvation = 46.131571 kcal Electronic energy + Delta-G solvation = -19492.366338 eV Core-core repulsion = 16425.504887 eV Total energy + Delta-G solvation = -3066.861451 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.25771 -38.89599 -36.47629 -34.29490 -32.59603 -31.78534 -29.39487 -28.78572 -27.25507 -24.81926 -24.64199 -22.85133 -20.60403 -20.20563 -18.82513 -17.95636 -17.24356 -16.86697 -15.92123 -15.65019 -15.25952 -14.72658 -14.41616 -14.19613 -13.96880 -13.53388 -13.14192 -12.91706 -12.62437 -12.43595 -12.09566 -11.76296 -11.56943 -10.98817 -10.88466 -10.71491 -10.63728 -10.39069 -10.11645 -9.99850 -9.93783 -9.75644 -9.54240 -9.04897 -8.64884 -8.35426 -6.90590 -5.75907 -3.10378 0.39819 1.00474 1.12867 2.29024 2.90522 3.38486 3.43883 3.46451 3.51661 3.78739 4.37570 4.45943 4.58704 4.94140 4.96348 5.20712 5.23225 5.33376 5.38117 5.50280 5.53712 5.66710 5.71729 5.90465 6.17056 6.33699 6.39026 6.51971 6.58570 6.76517 7.30909 7.49157 7.52416 7.73769 7.76512 8.19055 9.16206 9.75692 10.39935 11.36070 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.023334 B = 0.004211 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.659084 B = 6647.970228 C = 7398.603586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.189 3.811 3 C -0.230 4.230 4 C 0.372 3.628 5 O -0.286 6.286 6 C 0.067 3.933 7 H 0.101 0.899 8 C -0.138 4.138 9 C 0.179 3.821 10 N -0.600 5.600 11 C -0.229 4.229 12 H 0.079 0.921 13 C -0.006 4.006 14 N -0.922 5.922 15 Si 0.915 3.085 16 H -0.280 1.280 17 H -0.290 1.290 18 H -0.289 1.289 19 C 0.128 3.872 20 N -0.532 5.532 21 C 0.342 3.658 22 S -0.046 6.046 23 N -0.508 5.508 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.156 0.844 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.253 0.747 33 H 0.043 0.957 34 H 0.025 0.975 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.242 -6.758 3.288 19.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.043 3.957 3 C -0.254 4.254 4 C 0.182 3.818 5 O -0.188 6.188 6 C 0.010 3.990 7 H 0.119 0.881 8 C -0.177 4.177 9 C 0.055 3.945 10 N -0.328 5.328 11 C -0.357 4.357 12 H 0.097 0.903 13 C -0.203 4.203 14 N -0.569 5.569 15 Si 0.745 3.255 16 H -0.205 1.205 17 H -0.217 1.217 18 H -0.216 1.216 19 C 0.001 3.999 20 N -0.264 5.264 21 C -0.037 4.037 22 S 0.107 5.893 23 N -0.230 5.230 24 H 0.105 0.895 25 H 0.104 0.896 26 H 0.102 0.898 27 H 0.174 0.826 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.042 0.958 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.132 -7.993 3.501 19.226 hybrid contribution 0.196 1.464 -1.543 2.136 sum -16.936 -6.528 1.958 18.256 Atomic orbital electron populations 1.20769 0.87014 1.04310 1.03863 1.21665 0.97687 0.87192 0.89115 1.21902 0.92110 1.01565 1.09801 1.20322 0.89365 0.85654 0.86435 1.86284 1.22351 1.25201 1.84976 1.24027 0.73803 1.01235 0.99894 0.88104 1.23107 0.98878 0.95983 0.99690 1.21204 0.89338 0.97514 0.86467 1.44317 1.03585 1.63036 1.21885 1.19099 0.87308 1.29640 0.99665 0.90313 1.24812 0.97464 1.00152 0.97846 1.69951 1.21124 1.40877 1.24960 0.86004 0.82131 0.77392 0.79983 1.20506 1.21668 1.21607 1.21772 0.87717 0.97750 0.92693 1.68796 1.41019 0.97876 1.18738 1.23874 0.88627 0.95415 0.95806 1.86952 1.73629 1.15658 1.13018 1.68911 1.08019 1.29742 1.16370 0.89507 0.89587 0.89839 0.82624 0.91205 0.91263 0.92922 0.93108 0.93658 0.93850 0.95769 0.92138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 10.21 36.01 0.37 -0.32 16 2 C 0.19 2.14 6.82 -82.33 -0.56 1.58 16 3 C -0.23 -2.80 9.80 -39.14 -0.38 -3.19 16 4 C 0.37 5.85 7.52 -16.72 -0.13 5.72 16 5 O -0.29 -4.89 9.94 -18.23 -0.18 -5.08 16 6 C 0.07 1.29 3.30 -24.58 -0.08 1.21 16 7 H 0.10 2.02 7.09 -51.93 -0.37 1.65 16 8 C -0.14 -2.66 6.69 -24.89 -0.17 -2.83 16 9 C 0.18 4.38 5.38 -3.06 -0.02 4.36 16 10 N -0.60 -15.72 3.39 -170.07 -0.58 -16.30 16 11 C -0.23 -6.48 10.28 -15.06 -0.15 -6.64 16 12 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 13 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 14 N -0.92 -27.00 10.31 55.49 0.57 -26.43 16 15 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 C 0.13 2.82 6.97 -2.53 -0.02 2.81 16 20 N -0.53 -8.88 8.80 -13.50 -0.12 -9.00 16 21 C 0.34 5.12 7.91 -90.87 -0.72 4.40 16 22 S -0.05 -0.59 26.15 -107.50 -2.81 -3.40 16 23 N -0.51 -6.89 10.33 -9.73 -0.10 -6.99 16 24 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 27 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 28 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.05 1.40 7.38 -51.93 -0.38 1.02 16 31 H 0.05 1.35 7.50 -51.93 -0.39 0.96 16 32 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 33 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.11 1.27 9.55 96.90 0.93 2.19 16 LS Contribution 312.83 15.07 4.71 4.71 Total: -1.00 -31.48 312.83 -8.62 -40.10 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -3.14 Total: -1.61 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -1.95 Total: 6.82 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: -0.22 Total: -58.72 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.18 Total: -5.08 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 16 Polarization: -0.59 SS G_CDS: -2.81 Total: -3.40 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.48 -8.62 -40.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226798525.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.229 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds