Wall clock time and date at job start Tue Mar 31 2020 05:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38261 * 120.36520 * 2 1 4 4 C 1.39409 * 118.51451 * 180.02562 * 3 2 1 5 5 O 1.35513 * 120.45605 * 179.97438 * 4 3 2 6 6 C 1.42903 * 116.99915 * 180.02562 * 5 4 3 7 7 H 1.09002 * 110.88512 * 330.69900 * 6 5 4 8 8 C 1.55157 * 111.03704 * 206.79648 * 6 5 4 9 9 C 1.54332 * 102.94104 * 206.40796 * 8 6 5 10 10 N 1.47019 * 107.26809 * 22.19421 * 9 8 6 11 11 C 1.36946 * 125.64345 * 181.10024 * 10 9 8 12 12 H 1.08001 * 119.99804 * 179.97438 * 11 10 9 13 13 C 1.38808 * 119.99993 * 359.95246 * 11 10 9 14 14 N 1.31624 * 119.99990 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99877 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47101 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47121 * 119.99842 * 15 13 11 18 18 H 1.48498 * 109.46788 * 239.99784 * 15 13 11 19 19 C 1.47418 * 108.70625 * 1.05636 * 10 9 8 20 20 N 1.32739 * 119.07944 * 0.25460 * 4 3 2 21 21 C 1.32520 * 120.63715 * 359.48735 * 20 4 3 22 22 S 1.76208 * 119.19338 * 180.24195 * 21 20 4 23 23 N 1.32417 * 120.36122 * 180.02562 * 2 1 3 24 24 H 1.09007 * 109.46966 * 89.99888 * 1 2 3 25 25 H 1.09003 * 109.47229 * 210.00007 * 1 2 3 26 26 H 1.08995 * 109.47201 * 330.00338 * 1 2 3 27 27 H 1.08001 * 120.73733 * 0.04400 * 3 2 1 28 28 H 1.09000 * 110.71794 * 324.77037 * 8 6 5 29 29 H 1.08996 * 110.72326 * 88.04023 * 8 6 5 30 30 H 1.08993 * 109.88239 * 262.77257 * 9 8 6 31 31 H 1.09003 * 110.01003 * 141.68082 * 9 8 6 32 32 H 0.97002 * 119.99693 * 180.02562 * 14 13 11 33 33 H 1.09003 * 110.36673 * 217.03608 * 19 10 9 34 34 H 1.09000 * 110.46196 * 94.76525 * 19 10 9 35 35 H 1.40994 * 99.99932 * 270.27489 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1929 0.0000 4 6 3.5993 1.1479 -0.0005 5 8 4.3236 2.2933 -0.0011 6 6 5.7464 2.1611 -0.0022 7 1 6.0516 1.2408 0.4959 8 6 6.4211 3.3967 0.6502 9 6 7.8107 3.4261 -0.0206 10 7 7.6999 2.6868 -1.2866 11 6 8.7203 2.4636 -2.1723 12 1 8.5363 1.9058 -3.0786 13 6 9.9909 2.9546 -1.9054 14 7 10.2149 3.6352 -0.8013 15 14 11.3825 2.6507 -3.1139 16 1 10.8738 1.8663 -4.2676 17 1 11.9135 3.9515 -3.5948 18 1 12.4667 1.8923 -2.4397 19 6 6.3089 2.2247 -1.4441 20 7 4.2066 -0.0324 -0.0062 21 6 3.5018 -1.1546 -0.0011 22 16 4.3473 -2.7005 -0.0024 23 7 2.1763 -1.1426 -0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6840 2.1385 0.0007 28 1 5.8637 4.3053 0.4227 29 1 6.5157 3.2606 1.7275 30 1 8.5448 2.9458 0.6262 31 1 8.1081 4.4561 -0.2177 32 1 11.1028 3.9786 -0.6150 33 1 6.2872 1.2366 -1.9038 34 1 5.7375 2.9336 -2.0433 35 1 4.4642 -2.9145 -1.3911 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226798525.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:51 Heat of formation + Delta-G solvation = 24.605766 kcal Electronic energy + Delta-G solvation = -19493.299767 eV Core-core repulsion = 16425.504887 eV Total energy + Delta-G solvation = -3067.794880 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.35006 -40.28111 -38.16999 -35.29266 -34.43794 -33.04175 -31.22722 -29.80352 -28.85986 -26.59108 -25.87801 -24.01724 -22.19726 -22.02429 -19.97646 -19.31916 -18.73345 -18.32070 -17.07493 -16.89202 -16.61197 -16.42128 -15.96325 -15.61551 -15.24374 -14.82129 -14.26719 -14.19095 -14.00155 -13.83822 -13.49346 -13.16263 -12.97117 -12.77645 -12.60053 -12.23909 -12.08298 -12.02102 -11.84109 -11.78891 -11.54551 -11.13098 -10.77396 -10.65707 -10.19212 -9.36203 -9.00618 -7.91040 -5.28758 -0.61768 -0.03747 0.10442 1.33612 1.44359 1.45940 1.55816 1.64457 2.45351 2.47559 2.79257 3.28124 3.37053 3.48467 3.62515 3.71378 3.88430 4.01468 4.09098 4.16326 4.48319 4.59352 4.72095 4.74541 4.78349 4.81756 4.88878 4.99353 5.30843 5.36946 5.54277 5.64212 5.71408 5.97631 6.12867 6.67981 7.02744 7.66515 8.30213 9.19585 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.023334 B = 0.004211 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.659084 B = 6647.970228 C = 7398.603586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.190 3.810 3 C -0.217 4.217 4 C 0.342 3.658 5 O -0.285 6.285 6 C 0.089 3.911 7 H 0.091 0.909 8 C -0.122 4.122 9 C 0.187 3.813 10 N -0.622 5.622 11 C -0.250 4.250 12 H 0.080 0.920 13 C -0.059 4.059 14 N -0.948 5.948 15 Si 0.982 3.018 16 H -0.268 1.268 17 H -0.288 1.288 18 H -0.289 1.289 19 C 0.128 3.872 20 N -0.562 5.562 21 C 0.325 3.675 22 S -0.052 6.052 23 N -0.512 5.512 24 H 0.104 0.896 25 H 0.090 0.910 26 H 0.110 0.890 27 H 0.189 0.811 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.022 0.978 31 H 0.021 0.979 32 H 0.250 0.750 33 H 0.036 0.964 34 H 0.027 0.973 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.520 -6.980 3.068 21.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.044 3.956 3 C -0.239 4.239 4 C 0.153 3.847 5 O -0.189 6.189 6 C 0.032 3.968 7 H 0.109 0.891 8 C -0.160 4.160 9 C 0.062 3.938 10 N -0.350 5.350 11 C -0.378 4.378 12 H 0.097 0.903 13 C -0.253 4.253 14 N -0.596 5.596 15 Si 0.810 3.190 16 H -0.193 1.193 17 H -0.215 1.215 18 H -0.215 1.215 19 C 0.002 3.998 20 N -0.295 5.295 21 C -0.054 4.054 22 S 0.102 5.898 23 N -0.235 5.235 24 H 0.122 0.878 25 H 0.109 0.891 26 H 0.129 0.871 27 H 0.206 0.794 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.045 0.955 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.459 -8.241 3.278 21.385 hybrid contribution 0.759 1.472 -1.500 2.235 sum -18.700 -6.769 1.778 19.966 Atomic orbital electron populations 1.20955 0.83315 1.05920 1.05354 1.22487 0.99766 0.86163 0.87143 1.22294 0.90458 1.03381 1.07785 1.20705 0.90562 0.85057 0.88329 1.86248 1.20610 1.26116 1.85889 1.23476 0.75466 1.00575 0.97299 0.89116 1.22921 0.95715 0.96835 1.00565 1.20957 0.91872 0.95128 0.85857 1.44591 1.04806 1.63472 1.22117 1.19444 0.88389 1.29710 1.00289 0.90253 1.25670 0.99786 1.00133 0.99682 1.70155 1.21341 1.41613 1.26493 0.84963 0.78740 0.77207 0.78084 1.19252 1.21478 1.21537 1.21819 0.86083 0.97015 0.94862 1.68707 1.42249 0.98736 1.19761 1.24109 0.89363 0.95411 0.96475 1.86877 1.73818 1.14765 1.14388 1.68998 1.07372 1.30945 1.16136 0.87783 0.89106 0.87129 0.79395 0.89575 0.88780 0.95998 0.96036 0.94028 0.94607 0.95527 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.92 10.21 71.24 0.73 -0.19 16 2 C 0.19 3.74 6.82 42.48 0.29 4.03 16 3 C -0.22 -4.64 9.80 22.56 0.22 -4.42 16 4 C 0.34 10.28 7.52 84.84 0.64 10.92 16 5 O -0.29 -9.37 9.94 -88.15 -0.88 -10.25 16 6 C 0.09 3.39 3.30 31.99 0.11 3.50 16 7 H 0.09 3.66 7.09 -2.39 -0.02 3.64 16 8 C -0.12 -4.63 6.69 31.79 0.21 -4.41 16 9 C 0.19 9.37 5.38 86.73 0.47 9.84 16 10 N -0.62 -33.34 3.39 -692.00 -2.35 -35.69 16 11 C -0.25 -14.43 10.28 84.03 0.86 -13.56 16 12 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 13 C -0.06 -3.41 5.49 84.86 0.47 -2.95 16 14 N -0.95 -57.02 10.31 21.65 0.22 -56.80 16 15 Si 0.98 46.15 29.55 68.60 2.03 48.17 16 16 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 17 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 18 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 19 C 0.13 5.73 6.97 86.86 0.61 6.34 16 20 N -0.56 -18.51 8.80 -309.33 -2.72 -21.23 16 21 C 0.33 9.50 7.91 180.44 1.43 10.92 16 22 S -0.05 -1.31 26.15 -56.49 -1.48 -2.78 16 23 N -0.51 -13.00 10.33 -184.70 -1.91 -14.91 16 24 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 25 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.11 0.49 8.09 -2.39 -0.02 0.47 16 27 H 0.19 2.69 8.06 -2.91 -0.02 2.67 16 28 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 30 H 0.02 1.21 7.38 -2.39 -0.02 1.19 16 31 H 0.02 1.19 7.50 -2.39 -0.02 1.17 16 32 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 33 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.13 2.80 9.55 73.80 0.70 3.50 16 Total: -1.00 -69.77 312.83 0.76 -69.01 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: 1.82 Total: 4.47 kcal Atomic # 6 Polarization: 13.98 SS G_CDS: 6.02 Total: 20.01 kcal Atomic # 7 Polarization: -121.87 SS G_CDS: -6.76 Total: -128.63 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.88 Total: -10.25 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.17 kcal Atomic # 16 Polarization: -1.31 SS G_CDS: -1.48 Total: -2.78 kcal Total: -69.77 0.76 -69.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226798525.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.611 kcal (2) G-P(sol) polarization free energy of solvation -69.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds