Wall clock time and date at job start Tue Mar 31 2020 05:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38258 * 120.36577 * 2 1 4 4 C 1.39411 * 118.52186 * 179.97438 * 3 2 1 5 5 O 1.35515 * 120.46331 * 179.97438 * 4 3 2 6 6 C 1.42901 * 116.99801 * 180.02562 * 5 4 3 7 7 C 1.53935 * 113.73233 * 246.72915 * 6 5 4 8 8 N 1.47959 * 86.18155 * 221.91934 * 7 6 5 9 9 C 1.46903 * 111.00051 * 137.57965 * 8 7 6 10 10 C 1.50702 * 109.46747 * 70.64376 * 9 8 7 11 11 H 1.07998 * 120.00217 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99812 * 180.02562 * 10 9 8 13 13 N 1.31518 * 120.00007 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 120.00222 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.47074 * 90.00222 * 14 12 10 16 16 H 1.48501 * 109.47466 * 210.00728 * 14 12 10 17 17 H 1.48504 * 109.47228 * 330.00427 * 14 12 10 18 18 C 1.47964 * 90.76276 * 24.69083 * 8 7 6 19 19 N 1.32745 * 119.07091 * 0.25311 * 4 3 2 20 20 C 1.32524 * 120.63912 * 359.48542 * 19 4 3 21 21 S 1.76198 * 119.19219 * 180.26754 * 20 19 4 22 22 N 1.32410 * 120.36354 * 179.97438 * 2 1 3 23 23 H 1.09005 * 109.46668 * 90.00241 * 1 2 3 24 24 H 1.09000 * 109.47218 * 210.00379 * 1 2 3 25 25 H 1.08996 * 109.47165 * 330.00771 * 1 2 3 26 26 H 1.08002 * 120.73827 * 359.97438 * 3 2 1 27 27 H 1.09006 * 112.93824 * 18.43478 * 6 5 4 28 28 H 1.08997 * 113.75810 * 336.24150 * 7 6 5 29 29 H 1.09000 * 113.75593 * 107.60463 * 7 6 5 30 30 H 1.08995 * 109.47157 * 190.64421 * 9 8 7 31 31 H 1.09003 * 109.47242 * 310.64760 * 9 8 7 32 32 H 0.96998 * 119.99973 * 179.97438 * 13 12 10 33 33 H 1.08996 * 113.76417 * 220.99395 * 18 8 7 34 34 H 1.09001 * 113.75972 * 89.62191 * 18 8 7 35 35 H 1.41000 * 100.00066 * 270.25537 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1929 0.0000 4 6 3.5993 1.1481 0.0005 5 8 4.3236 2.2934 0.0000 6 6 5.7465 2.1612 0.0001 7 6 6.4149 2.6588 1.2944 8 7 7.4410 3.2618 0.4155 9 6 7.7979 4.6117 0.8720 10 6 8.5796 4.5171 2.1569 11 1 8.7906 3.5509 2.5907 12 6 9.0254 5.6642 2.7786 13 7 9.7081 5.5816 3.8997 14 14 8.6610 7.3354 2.0279 15 1 7.3717 7.8462 2.5590 16 1 9.7502 8.2828 2.3764 17 1 8.5715 7.2059 0.5512 18 6 6.4763 3.3187 -0.7050 19 7 4.2066 -0.0323 -0.0041 20 6 3.5018 -1.1545 0.0011 21 16 4.3473 -2.7004 0.0018 22 7 2.1763 -1.1425 0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5137 26 1 1.6840 2.1385 -0.0004 27 1 6.0814 1.1735 -0.3169 28 1 5.8209 3.3903 1.8422 29 1 6.7953 1.8577 1.9282 30 1 8.4055 5.1034 0.1123 31 1 6.8895 5.1900 1.0411 32 1 10.0220 6.3886 4.3369 33 1 6.9057 3.0450 -1.6686 34 1 5.9003 4.2433 -0.7419 35 1 4.4653 -2.9156 -1.3866 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226798803.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:50 Heat of formation + Delta-G solvation = 59.771081 kcal Electronic energy + Delta-G solvation = -19077.412626 eV Core-core repulsion = 16011.142629 eV Total energy + Delta-G solvation = -3066.269997 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.42309 -39.75056 -37.52237 -34.42188 -32.87927 -32.15105 -29.88887 -28.79782 -25.89103 -25.45619 -24.95616 -23.10510 -21.30882 -19.69985 -19.05543 -17.97021 -17.35983 -16.91826 -16.21494 -15.80434 -15.40177 -15.22219 -14.78066 -14.45070 -14.08332 -13.64619 -13.45030 -12.96787 -12.82821 -12.68969 -12.33859 -12.16497 -12.03828 -11.68484 -11.06903 -10.88057 -10.80467 -10.67349 -10.12562 -9.98238 -9.83769 -9.73665 -9.34307 -9.19581 -8.65949 -8.49543 -8.13083 -6.10784 -4.09821 0.26132 0.85732 0.98040 2.14092 2.72589 3.23840 3.31944 3.33305 3.37277 3.64825 4.23796 4.36451 4.41695 4.48547 4.71470 4.82296 4.85518 5.14804 5.20557 5.24916 5.30492 5.39950 5.61246 5.76782 5.86780 5.94097 6.16880 6.23467 6.40804 6.59058 6.69396 7.09015 7.18037 7.58679 7.65042 7.69820 8.52742 8.96893 9.49521 11.02266 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.026196 B = 0.003561 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.621572 B = 7861.259800 C = 8408.823082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.191 3.809 3 C -0.229 4.229 4 C 0.371 3.629 5 O -0.285 6.285 6 C 0.045 3.955 7 C 0.016 3.984 8 N -0.459 5.459 9 C 0.132 3.868 10 C -0.515 4.515 11 H 0.080 0.920 12 C 0.070 3.930 13 N -0.897 5.897 14 Si 0.876 3.124 15 H -0.277 1.277 16 H -0.284 1.284 17 H -0.267 1.267 18 C 0.000 4.000 19 N -0.536 5.536 20 C 0.341 3.659 21 S -0.040 6.040 22 N -0.506 5.506 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.157 0.843 27 H 0.125 0.875 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.035 0.965 31 H -0.006 1.006 32 H 0.265 0.735 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.523 -11.680 -10.616 24.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.046 3.954 3 C -0.252 4.252 4 C 0.181 3.819 5 O -0.188 6.188 6 C -0.011 4.011 7 C -0.113 4.113 8 N -0.183 5.183 9 C 0.005 3.995 10 C -0.553 4.553 11 H 0.098 0.902 12 C -0.132 4.132 13 N -0.535 5.535 14 Si 0.703 3.297 15 H -0.202 1.202 16 H -0.210 1.210 17 H -0.191 1.191 18 C -0.129 4.129 19 N -0.269 5.269 20 C -0.038 4.038 21 S 0.113 5.887 22 N -0.228 5.228 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.103 0.897 26 H 0.175 0.825 27 H 0.142 0.858 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.052 0.948 31 H 0.011 0.989 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.908 -13.157 -10.320 23.780 hybrid contribution -1.368 3.125 -1.011 3.558 sum -18.276 -10.032 -11.331 23.729 Atomic orbital electron populations 1.20788 0.86896 1.04510 1.03889 1.21693 0.97776 0.87132 0.88823 1.21943 0.92133 1.01671 1.09429 1.20302 0.89396 0.85647 0.86550 1.86403 1.22063 1.25379 1.84952 1.25143 0.74247 1.01980 0.99764 1.24200 0.92388 0.99884 0.94816 1.68539 1.25061 1.21815 1.02916 1.20697 0.95692 0.85553 0.97569 1.20942 1.34014 0.95368 1.05002 0.90157 1.24908 0.94670 0.98931 0.94690 1.69893 1.37220 1.28953 1.17484 0.86848 0.78258 0.84416 0.80173 1.20250 1.20980 1.19141 1.24319 0.93423 0.96856 0.98320 1.68694 1.41115 0.97889 1.19155 1.23889 0.88702 0.95376 0.95830 1.87084 1.73410 1.15649 1.12549 1.68919 1.07993 1.29772 1.16137 0.89465 0.89466 0.89717 0.82531 0.85772 0.90443 0.88980 0.94753 0.98854 0.92538 0.89063 0.90891 0.92510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.62 10.21 36.01 0.37 -0.25 16 2 C 0.19 1.96 6.82 -82.34 -0.56 1.40 16 3 C -0.23 -2.52 9.80 -39.14 -0.38 -2.90 16 4 C 0.37 5.20 7.53 -16.72 -0.13 5.07 16 5 O -0.29 -4.35 10.15 -18.24 -0.19 -4.54 16 6 C 0.04 0.73 4.38 -25.80 -0.11 0.62 16 7 C 0.02 0.31 7.29 -2.77 -0.02 0.29 16 8 N -0.46 -9.70 6.25 -239.96 -1.50 -11.20 16 9 C 0.13 3.20 3.65 -4.97 -0.02 3.18 16 10 C -0.52 -14.74 9.40 -34.44 -0.32 -15.06 16 11 H 0.08 2.51 8.05 -52.49 -0.42 2.09 16 12 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 13 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 14 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 18 C 0.00 0.00 7.81 -2.76 -0.02 -0.02 16 19 N -0.54 -7.82 8.71 -13.50 -0.12 -7.94 16 20 C 0.34 4.54 7.91 -90.87 -0.72 3.82 16 21 S -0.04 -0.44 26.15 -107.50 -2.81 -3.26 16 22 N -0.51 -6.23 10.33 -9.74 -0.10 -6.33 16 23 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.36 8.09 -51.93 -0.42 -0.06 16 26 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 27 H 0.12 1.99 6.90 -51.93 -0.36 1.63 16 28 H 0.08 1.55 7.78 -51.93 -0.40 1.15 16 29 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 30 H 0.03 0.84 7.20 -51.93 -0.37 0.47 16 31 H -0.01 -0.15 7.12 -51.93 -0.37 -0.52 16 32 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.07 1.20 7.79 -51.93 -0.40 0.80 16 35 H 0.11 0.97 9.55 96.90 0.93 1.89 16 LS Contribution 315.46 15.07 4.75 4.75 Total: -1.00 -32.08 315.46 -8.98 -41.06 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -3.11 Total: -0.59 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: -2.02 Total: -1.92 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.95 Total: -52.21 kcal Atomic # 8 Polarization: -4.35 SS G_CDS: -0.19 Total: -4.54 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Atomic # 16 Polarization: -0.44 SS G_CDS: -2.81 Total: -3.26 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.08 -8.98 -41.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226798803.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.834 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds