Wall clock time and date at job start Tue Mar 31 2020 05:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38163 * 119.97627 * 2 1 4 4 C 1.38709 * 119.95655 * 180.27748 * 3 2 1 5 5 O 1.35921 * 120.04667 * 179.74749 * 4 3 2 6 6 C 1.42899 * 117.00377 * 173.77126 * 5 4 3 7 7 C 1.53500 * 114.17163 * 201.74636 * 6 5 4 8 8 N 1.47478 * 87.93238 * 220.32980 * 7 6 5 9 9 C 1.46907 * 111.00027 * 138.70746 * 8 7 6 10 10 C 1.50692 * 109.46978 * 170.00185 * 9 8 7 11 11 H 1.07997 * 120.00287 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00013 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00045 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00232 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47162 * 180.02562 * 14 12 10 16 16 H 1.48499 * 109.46838 * 299.99866 * 14 12 10 17 17 H 1.48498 * 109.47307 * 59.99663 * 14 12 10 18 18 C 1.47472 * 87.83556 * 27.01091 * 8 7 6 19 19 C 1.38744 * 119.91225 * 359.46853 * 4 3 2 20 20 C 1.38128 * 119.95787 * 0.25246 * 19 4 3 21 21 C 1.38343 * 119.98083 * 179.72093 * 2 1 3 22 22 Cl 1.73601 * 119.95663 * 0.02562 * 21 2 1 23 23 H 1.09002 * 109.46744 * 270.27402 * 1 2 3 24 24 H 1.08997 * 109.46795 * 30.27736 * 1 2 3 25 25 H 1.09000 * 109.46888 * 150.27794 * 1 2 3 26 26 H 1.08003 * 120.02709 * 0.02562 * 3 2 1 27 27 H 1.08996 * 113.25261 * 334.70191 * 6 5 4 28 28 H 1.09000 * 113.48005 * 105.55901 * 7 6 5 29 29 H 1.08999 * 113.47937 * 335.10000 * 7 6 5 30 30 H 1.08996 * 109.47246 * 49.99748 * 9 8 7 31 31 H 1.09001 * 109.46445 * 289.99732 * 9 8 7 32 32 H 0.96995 * 120.00580 * 180.02562 * 13 12 10 33 33 H 1.08997 * 113.47705 * 87.75739 * 18 8 7 34 34 H 1.08999 * 113.47791 * 218.22274 * 18 8 7 35 35 H 1.08001 * 120.02313 * 180.28082 * 19 4 3 36 36 H 1.07997 * 119.97645 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1968 0.0000 4 6 3.5844 1.1963 -0.0058 5 8 4.2654 2.3727 -0.0110 6 6 5.6864 2.3004 0.1213 7 6 6.3371 3.5948 0.6285 8 7 7.4245 3.3649 -0.3408 9 6 7.8219 4.6195 -0.9936 10 6 9.0842 4.3956 -1.7857 11 1 9.5454 3.4192 -1.8022 12 6 9.6504 5.4374 -2.4893 13 7 9.0886 6.6264 -2.4697 14 14 11.2156 5.1602 -3.4706 15 1 11.6173 6.4284 -4.1306 16 1 12.2988 4.7127 -2.5587 17 1 10.9754 4.1193 -4.5021 18 6 6.4549 2.6228 -1.1679 19 6 4.2759 -0.0065 -0.0005 20 6 3.5822 -1.2009 0.0054 21 6 2.1983 -1.1983 0.0058 22 17 1.3287 -2.7008 0.0125 23 1 -0.3633 0.0049 1.0277 24 1 -0.3633 0.8875 -0.5181 25 1 -0.3633 -0.8925 -0.5095 26 1 1.6574 2.1322 0.0004 27 1 6.0256 1.3999 0.6333 28 1 6.6624 3.5393 1.6673 29 1 5.7490 4.4880 0.4176 30 1 7.9988 5.3830 -0.2361 31 1 7.0268 4.9486 -1.6626 32 1 9.4866 7.3592 -2.9650 33 1 5.8983 3.2566 -1.8582 34 1 6.8800 1.7433 -1.6515 35 1 5.3559 -0.0089 -0.0004 36 1 4.1201 -2.1374 0.0099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228072190.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:37 Heat of formation + Delta-G solvation = 15.967512 kcal Electronic energy + Delta-G solvation = -18848.365687 eV Core-core repulsion = 15745.859767 eV Total energy + Delta-G solvation = -3102.505920 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.60785 -39.20871 -37.30327 -36.20604 -32.94001 -32.84496 -30.36236 -29.05372 -27.24843 -25.60099 -25.29159 -22.85581 -22.56010 -20.89982 -19.51231 -18.11381 -16.77740 -16.45698 -16.21337 -15.45816 -14.95771 -14.86841 -14.38610 -14.18769 -14.00243 -13.48502 -13.24162 -12.80166 -12.57053 -12.45067 -12.27814 -12.19742 -12.00114 -11.68105 -11.29096 -11.24490 -10.95858 -10.78138 -10.65000 -10.32441 -10.01280 -9.85360 -9.31746 -9.07830 -8.49282 -8.18664 -8.06476 -6.08509 -4.10518 1.02307 1.09526 2.01857 3.14755 3.31031 3.34835 3.38131 3.42799 4.38360 4.49520 4.52199 4.66051 4.76969 4.81477 5.00722 5.12007 5.19475 5.26755 5.36024 5.38424 5.55326 5.69350 5.76704 5.89538 5.94940 6.01076 6.10102 6.14683 6.17229 6.25708 6.43365 6.45754 7.08247 7.40807 7.54814 7.75351 8.00816 8.35444 8.96168 9.53795 11.02552 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.037477 B = 0.002904 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.954626 B = 9640.645297 C = 9972.351842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.038 4.038 3 C -0.149 4.149 4 C 0.151 3.849 5 O -0.298 6.298 6 C 0.040 3.960 7 C 0.004 3.996 8 N -0.460 5.460 9 C 0.161 3.839 10 C -0.508 4.508 11 H 0.063 0.937 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.901 3.099 15 H -0.287 1.287 16 H -0.275 1.275 17 H -0.276 1.276 18 C -0.004 4.004 19 C -0.204 4.204 20 C -0.064 4.064 21 C -0.082 4.082 22 Cl -0.077 7.077 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.139 0.861 27 H 0.109 0.891 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.032 0.968 31 H 0.007 0.993 32 H 0.263 0.737 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.142 0.858 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.356 -14.620 6.123 22.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.039 4.039 3 C -0.168 4.168 4 C 0.104 3.896 5 O -0.210 6.210 6 C -0.016 4.016 7 C -0.125 4.125 8 N -0.185 5.185 9 C 0.035 3.965 10 C -0.547 4.547 11 H 0.082 0.918 12 C -0.147 4.147 13 N -0.539 5.539 14 Si 0.729 3.271 15 H -0.213 1.213 16 H -0.201 1.201 17 H -0.202 1.202 18 C -0.133 4.133 19 C -0.223 4.223 20 C -0.082 4.082 21 C -0.109 4.109 22 Cl -0.048 7.048 23 H 0.095 0.905 24 H 0.091 0.909 25 H 0.093 0.907 26 H 0.156 0.844 27 H 0.127 0.873 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.024 0.976 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.159 0.841 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.819 -14.624 6.226 22.425 hybrid contribution 0.358 0.227 -0.899 0.993 sum -15.462 -14.397 5.328 21.788 Atomic orbital electron populations 1.20882 0.90020 1.03606 1.03035 1.19495 0.96552 0.90575 0.97235 1.20258 0.91054 0.98138 1.07358 1.19126 0.91731 0.85449 0.93256 1.86213 1.21282 1.27347 1.86186 1.24604 0.76183 1.00822 1.00022 1.24035 0.93031 0.95469 0.99969 1.69038 1.20859 1.20202 1.08371 1.20287 0.96619 0.85629 0.93918 1.21032 1.08593 0.96623 1.28446 0.91831 1.25009 0.97822 0.95028 0.96796 1.69941 1.40237 1.01126 1.42553 0.86507 0.83198 0.77325 0.80090 1.21284 1.20099 1.20201 1.24289 0.93282 1.00488 0.95242 1.21317 1.01104 0.91401 1.08437 1.20810 0.91749 0.98567 0.97102 1.20596 0.92214 0.86446 1.11654 1.98334 1.76867 1.32388 1.97257 0.90478 0.90867 0.90676 0.84360 0.87318 0.89594 0.90806 0.95007 0.97550 0.92746 0.90623 0.90006 0.84055 0.84774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 9.61 36.01 0.35 -0.60 16 2 C -0.04 -0.40 5.88 -104.61 -0.62 -1.01 16 3 C -0.15 -1.74 9.64 -39.43 -0.38 -2.12 16 4 C 0.15 1.98 6.68 -39.22 -0.26 1.72 16 5 O -0.30 -4.47 10.19 -19.49 -0.20 -4.67 16 6 C 0.04 0.61 4.01 -26.21 -0.11 0.50 16 7 C 0.00 0.07 7.52 -7.57 -0.06 0.01 16 8 N -0.46 -9.74 6.32 -246.18 -1.55 -11.29 16 9 C 0.16 4.16 4.57 -4.98 -0.02 4.14 16 10 C -0.51 -14.36 9.39 -34.44 -0.32 -14.68 16 11 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 12 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 13 N -0.90 -26.62 13.29 55.43 0.74 -25.89 16 14 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 C 0.00 -0.07 7.55 -7.56 -0.06 -0.12 16 19 C -0.20 -2.41 9.02 -39.43 -0.36 -2.77 16 20 C -0.06 -0.68 9.82 -39.57 -0.39 -1.07 16 21 C -0.08 -0.89 6.31 -39.49 -0.25 -1.14 16 22 Cl -0.08 -0.75 27.28 -51.86 -1.41 -2.16 16 23 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 25 H 0.07 0.58 6.90 -51.93 -0.36 0.22 16 26 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 27 H 0.11 1.44 5.99 -51.93 -0.31 1.13 16 28 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.07 1.31 7.91 -51.93 -0.41 0.90 16 30 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 31 H 0.01 0.18 7.30 -51.93 -0.38 -0.20 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.08 1.47 7.42 -51.93 -0.39 1.09 16 34 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.14 1.56 5.92 -52.49 -0.31 1.24 16 36 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 317.68 15.07 4.79 4.79 Total: -1.00 -29.93 317.68 -9.89 -39.82 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -4.65 Total: -1.52 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -2.57 Total: -15.68 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: -0.82 Total: -37.18 kcal Atomic # 8 Polarization: -4.47 SS G_CDS: -0.20 Total: -4.67 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.41 Total: -2.16 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.93 -9.89 -39.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228072190.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.788 kcal (2) G-P(sol) polarization free energy of solvation -29.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds