Wall clock time and date at job start Tue Mar 31 2020 05:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38163 * 119.97627 * 2 1 4 4 C 1.38709 * 119.95655 * 180.27748 * 3 2 1 5 5 O 1.35921 * 120.04667 * 179.74749 * 4 3 2 6 6 C 1.42899 * 117.00377 * 173.77126 * 5 4 3 7 7 C 1.53500 * 114.17163 * 201.74636 * 6 5 4 8 8 N 1.47478 * 87.93238 * 220.32980 * 7 6 5 9 9 C 1.46907 * 111.00027 * 138.70746 * 8 7 6 10 10 C 1.50692 * 109.46978 * 170.00185 * 9 8 7 11 11 H 1.07997 * 120.00287 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00013 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00045 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00232 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47162 * 180.02562 * 14 12 10 16 16 H 1.48499 * 109.46838 * 299.99866 * 14 12 10 17 17 H 1.48498 * 109.47307 * 59.99663 * 14 12 10 18 18 C 1.47472 * 87.83556 * 27.01091 * 8 7 6 19 19 C 1.38744 * 119.91225 * 359.46853 * 4 3 2 20 20 C 1.38128 * 119.95787 * 0.25246 * 19 4 3 21 21 C 1.38343 * 119.98083 * 179.72093 * 2 1 3 22 22 Cl 1.73601 * 119.95663 * 0.02562 * 21 2 1 23 23 H 1.09002 * 109.46744 * 270.27402 * 1 2 3 24 24 H 1.08997 * 109.46795 * 30.27736 * 1 2 3 25 25 H 1.09000 * 109.46888 * 150.27794 * 1 2 3 26 26 H 1.08003 * 120.02709 * 0.02562 * 3 2 1 27 27 H 1.08996 * 113.25261 * 334.70191 * 6 5 4 28 28 H 1.09000 * 113.48005 * 105.55901 * 7 6 5 29 29 H 1.08999 * 113.47937 * 335.10000 * 7 6 5 30 30 H 1.08996 * 109.47246 * 49.99748 * 9 8 7 31 31 H 1.09001 * 109.46445 * 289.99732 * 9 8 7 32 32 H 0.96995 * 120.00580 * 180.02562 * 13 12 10 33 33 H 1.08997 * 113.47705 * 87.75739 * 18 8 7 34 34 H 1.08999 * 113.47791 * 218.22274 * 18 8 7 35 35 H 1.08001 * 120.02313 * 180.28082 * 19 4 3 36 36 H 1.07997 * 119.97645 * 180.02562 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1968 0.0000 4 6 3.5844 1.1963 -0.0058 5 8 4.2654 2.3727 -0.0110 6 6 5.6864 2.3004 0.1213 7 6 6.3371 3.5948 0.6285 8 7 7.4245 3.3649 -0.3408 9 6 7.8219 4.6195 -0.9936 10 6 9.0842 4.3956 -1.7857 11 1 9.5454 3.4192 -1.8022 12 6 9.6504 5.4374 -2.4893 13 7 9.0886 6.6264 -2.4697 14 14 11.2156 5.1602 -3.4706 15 1 11.6173 6.4284 -4.1306 16 1 12.2988 4.7127 -2.5587 17 1 10.9754 4.1193 -4.5021 18 6 6.4549 2.6228 -1.1679 19 6 4.2759 -0.0065 -0.0005 20 6 3.5822 -1.2009 0.0054 21 6 2.1983 -1.1983 0.0058 22 17 1.3287 -2.7008 0.0125 23 1 -0.3633 0.0049 1.0277 24 1 -0.3633 0.8875 -0.5181 25 1 -0.3633 -0.8925 -0.5095 26 1 1.6574 2.1322 0.0004 27 1 6.0256 1.3999 0.6333 28 1 6.6624 3.5393 1.6673 29 1 5.7490 4.4880 0.4176 30 1 7.9988 5.3830 -0.2361 31 1 7.0268 4.9486 -1.6626 32 1 9.4866 7.3592 -2.9650 33 1 5.8983 3.2566 -1.8582 34 1 6.8800 1.7433 -1.6515 35 1 5.3559 -0.0089 -0.0004 36 1 4.1201 -2.1374 0.0099 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228072190.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:37 Heat of formation + Delta-G solvation = -2.748483 kcal Electronic energy + Delta-G solvation = -18849.177273 eV Core-core repulsion = 15745.859767 eV Total energy + Delta-G solvation = -3103.317506 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.78276 -40.38011 -38.39677 -37.08523 -35.04724 -33.64461 -31.66392 -30.53636 -28.07688 -27.21762 -26.89346 -24.11857 -23.72793 -22.25732 -20.83587 -19.16697 -18.56880 -17.66024 -17.35351 -16.76782 -16.53441 -16.21709 -15.70590 -15.23517 -15.14599 -14.60298 -14.41121 -14.12262 -14.00137 -13.76264 -13.34583 -13.26534 -13.15736 -12.93780 -12.84251 -12.53050 -12.32719 -12.20636 -12.07418 -11.73966 -11.59853 -11.31739 -11.18394 -10.63874 -9.91072 -9.83394 -9.12161 -8.25300 -6.36265 0.15875 0.21511 1.19677 1.39877 1.43242 1.51407 2.02905 2.38694 2.54186 3.06967 3.21757 3.31649 3.68262 3.75026 3.82456 3.95783 4.20104 4.30943 4.36972 4.42035 4.57285 4.61818 4.65050 4.76216 4.78369 4.82998 4.86886 4.97827 5.07862 5.17817 5.27339 5.33696 5.51152 5.58631 5.69772 5.99799 6.32193 6.35812 6.77343 7.33456 8.85958 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.037477 B = 0.002904 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.954626 B = 9640.645297 C = 9972.351842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.039 4.039 3 C -0.155 4.155 4 C 0.125 3.875 5 O -0.312 6.312 6 C 0.071 3.929 7 C 0.000 4.000 8 N -0.474 5.474 9 C 0.176 3.824 10 C -0.529 4.529 11 H 0.062 0.938 12 C 0.001 3.999 13 N -0.934 5.934 14 Si 0.972 3.028 15 H -0.281 1.281 16 H -0.267 1.267 17 H -0.267 1.267 18 C -0.010 4.010 19 C -0.208 4.208 20 C -0.065 4.065 21 C -0.088 4.088 22 Cl -0.066 7.066 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.146 0.854 27 H 0.136 0.864 28 H 0.107 0.893 29 H 0.063 0.937 30 H 0.006 0.994 31 H -0.020 1.020 32 H 0.266 0.734 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.149 0.851 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.659 -16.593 6.296 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.040 4.040 3 C -0.174 4.174 4 C 0.080 3.920 5 O -0.224 6.224 6 C 0.015 3.985 7 C -0.129 4.129 8 N -0.198 5.198 9 C 0.049 3.951 10 C -0.568 4.568 11 H 0.080 0.920 12 C -0.197 4.197 13 N -0.574 5.574 14 Si 0.796 3.204 15 H -0.207 1.207 16 H -0.192 1.192 17 H -0.192 1.192 18 C -0.139 4.139 19 C -0.226 4.226 20 C -0.084 4.084 21 C -0.115 4.115 22 Cl -0.037 7.037 23 H 0.107 0.893 24 H 0.102 0.898 25 H 0.097 0.903 26 H 0.164 0.836 27 H 0.154 0.846 28 H 0.126 0.874 29 H 0.081 0.919 30 H 0.024 0.976 31 H -0.002 1.002 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.167 0.833 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -16.144 -16.621 6.412 24.042 hybrid contribution 0.305 0.759 -0.921 1.232 sum -15.839 -15.863 5.490 23.079 Atomic orbital electron populations 1.20951 0.88197 1.04333 1.04003 1.19780 0.97907 0.90076 0.96254 1.20448 0.90699 0.99040 1.07212 1.19373 0.92308 0.85190 0.95140 1.86175 1.20716 1.28721 1.86830 1.24246 0.76619 1.00448 0.97233 1.24092 0.92091 0.96500 1.00234 1.68909 1.23321 1.17973 1.09586 1.19938 0.95314 0.87176 0.92668 1.21386 1.09567 0.96718 1.29091 0.91958 1.25959 1.01351 0.94612 0.97777 1.70067 1.41926 1.02045 1.43406 0.85389 0.78797 0.77556 0.78620 1.20672 1.19164 1.19198 1.24310 0.93184 1.00021 0.96386 1.21421 1.01542 0.91290 1.08383 1.21044 0.91940 0.98994 0.96400 1.20801 0.92561 0.87087 1.11036 1.98340 1.76607 1.31596 1.97164 0.89285 0.89796 0.90322 0.83617 0.84624 0.87440 0.91878 0.97600 1.00187 0.92506 0.92538 0.88942 0.83326 0.82873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.62 9.61 71.24 0.68 -0.93 16 2 C -0.04 -0.76 5.88 -19.86 -0.12 -0.87 16 3 C -0.16 -3.42 9.64 22.36 0.22 -3.20 16 4 C 0.13 3.15 6.68 22.50 0.15 3.30 16 5 O -0.31 -9.14 10.19 -92.66 -0.94 -10.09 16 6 C 0.07 2.09 4.01 30.93 0.12 2.21 16 7 C 0.00 -0.01 7.52 83.56 0.63 0.62 16 8 N -0.47 -20.33 6.32 -933.15 -5.89 -26.22 16 9 C 0.18 9.44 4.57 85.55 0.39 9.83 16 10 C -0.53 -30.46 9.39 25.60 0.24 -30.22 16 11 H 0.06 3.52 7.81 -2.91 -0.02 3.49 16 12 C 0.00 0.07 5.46 84.65 0.46 0.53 16 13 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 14 Si 0.97 44.34 29.54 68.60 2.03 46.36 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 16 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 17 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 18 C -0.01 -0.36 7.55 83.57 0.63 0.27 16 19 C -0.21 -4.54 9.02 22.36 0.20 -4.34 16 20 C -0.07 -1.26 9.82 22.28 0.22 -1.04 16 21 C -0.09 -1.72 6.31 22.33 0.14 -1.58 16 22 Cl -0.07 -1.13 27.28 -2.72 -0.07 -1.20 16 23 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 25 H 0.08 1.03 6.90 -2.39 -0.02 1.01 16 26 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 27 H 0.14 3.28 5.99 -2.39 -0.01 3.27 16 28 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 29 H 0.06 2.32 7.91 -2.39 -0.02 2.30 16 30 H 0.01 0.34 8.08 -2.39 -0.02 0.32 16 31 H -0.02 -1.13 7.30 -2.39 -0.02 -1.15 16 32 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 33 H 0.06 2.29 7.42 -2.39 -0.02 2.27 16 34 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 35 H 0.15 2.94 5.92 -2.91 -0.02 2.92 16 36 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -64.81 317.68 0.45 -64.36 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 1.08 Total: 8.40 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: 3.97 Total: -25.43 kcal Atomic # 7 Polarization: -76.80 SS G_CDS: -5.61 Total: -82.41 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.94 Total: -10.09 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.07 Total: -1.20 kcal Total: -64.81 0.45 -64.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228072190.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.610 kcal (2) G-P(sol) polarization free energy of solvation -64.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds