Wall clock time and date at job start Tue Mar 31 2020 05:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36261 * 120.06123 * 2 1 4 4 C 1.39929 * 120.12508 * 179.97438 * 3 2 1 5 5 C 1.47964 * 119.88188 * 180.02562 * 4 3 2 6 6 C 1.39796 * 120.04137 * 359.97438 * 5 4 3 7 7 C 1.37904 * 120.20311 * 180.02562 * 6 5 4 8 8 C 1.38459 * 120.27900 * 0.02562 * 7 6 5 9 9 F 1.35100 * 119.96321 * 179.97438 * 8 7 6 10 10 C 1.40008 * 120.06947 * 359.94733 * 8 7 6 11 11 C 1.43202 * 120.10041 * 180.02562 * 10 8 7 12 12 N 8.33597 * 153.57574 * 0.04309 * 2 1 3 13 13 C 1.39307 * 120.03651 * 179.72609 * 5 4 3 14 14 C 1.39972 * 120.23418 * 0.02562 * 4 3 2 15 15 C 1.36229 * 120.11767 * 359.70924 * 14 4 3 16 16 C 1.40922 * 120.06415 * 179.97438 * 2 1 3 17 17 C 1.41020 * 120.11476 * 0.02562 * 16 2 1 18 18 H 1.08003 * 119.99888 * 26.82134 * 17 16 2 19 19 C 1.39993 * 119.99976 * 206.82394 * 17 16 2 20 20 N 1.30805 * 120.00131 * 16.42216 * 19 17 16 21 21 Si 1.86796 * 119.99977 * 196.42308 * 19 17 16 22 22 H 1.48508 * 109.47180 * 265.18681 * 21 19 17 23 23 H 1.48498 * 109.47244 * 25.18725 * 21 19 17 24 24 H 1.48499 * 109.47157 * 145.18961 * 21 19 17 25 25 H 1.08994 * 109.47089 * 270.01541 * 1 2 3 26 26 H 1.09000 * 109.47378 * 30.02001 * 1 2 3 27 27 H 1.09003 * 109.46757 * 150.02026 * 1 2 3 28 28 H 1.08000 * 119.93474 * 0.02562 * 3 2 1 29 29 H 1.07994 * 119.89786 * 0.02562 * 6 5 4 30 30 H 1.07995 * 119.85835 * 179.97438 * 7 6 5 31 31 H 1.08000 * 120.13173 * 359.97438 * 13 5 4 32 32 H 1.07995 * 119.93886 * 179.97438 * 14 4 3 33 33 H 1.08003 * 120.05957 * 180.27615 * 15 14 4 34 34 H 0.96999 * 120.00080 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1895 1.1793 0.0000 4 6 3.5888 1.1809 0.0005 5 6 4.3246 2.4646 0.0011 6 6 3.6226 3.6736 0.0006 7 6 4.3050 4.8720 0.0006 8 6 5.6895 4.8870 0.0006 9 9 6.3515 6.0647 0.0000 10 6 6.4041 3.6831 0.0017 11 6 7.8361 3.6979 0.0022 12 7 8.9720 3.7096 0.0028 13 6 5.7176 2.4700 0.0074 14 6 4.2950 -0.0277 0.0005 15 6 3.6224 -1.2123 0.0060 16 6 2.2129 -1.2196 0.0005 17 6 1.5117 -2.4431 0.0005 18 1 0.5191 -2.4966 -0.4219 19 6 2.1020 -3.5883 0.5481 20 7 3.1408 -3.4760 1.3350 21 14 1.4063 -5.2767 0.1550 22 1 0.4574 -5.6821 1.2230 23 1 0.6942 -5.2277 -1.1473 24 1 2.5140 -6.2625 0.0767 25 1 -0.3633 0.0003 1.0276 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6495 2.1146 0.0004 29 1 2.5427 3.6690 0.0002 30 1 3.7571 5.8026 -0.0003 31 1 6.2633 1.5380 0.0123 32 1 5.3749 -0.0209 0.0005 33 1 4.1682 -2.1443 0.0105 34 1 3.5497 -4.2695 1.7147 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235895645.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:52 Heat of formation + Delta-G solvation = 13.770842 kcal Electronic energy + Delta-G solvation = -19840.487207 eV Core-core repulsion = 16616.858577 eV Total energy + Delta-G solvation = -3223.628630 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.81526 -39.27620 -37.75006 -36.31933 -34.11092 -32.33013 -31.52228 -30.60290 -28.77521 -26.48813 -25.02061 -23.78020 -22.60965 -21.08988 -19.65234 -18.35342 -17.70740 -16.96700 -16.29061 -15.60248 -15.54735 -15.06056 -14.33689 -13.89000 -13.63218 -13.62459 -13.49335 -13.13167 -13.04491 -12.86029 -12.58069 -12.26100 -12.12427 -12.01746 -11.60409 -11.37612 -11.27346 -10.99583 -10.96104 -10.83649 -10.60403 -9.77672 -9.55968 -9.47193 -8.98396 -8.71133 -7.63941 -7.23762 -7.03770 -4.57433 0.77919 1.21736 2.48362 2.69556 2.86677 2.89017 2.91960 2.96477 3.24902 3.69885 3.88864 3.94589 4.29087 4.47255 4.84915 5.22093 5.33727 5.40453 5.42259 5.74814 5.94273 6.02266 6.17009 6.19223 6.26420 6.33172 6.50544 6.54214 6.55033 6.74239 6.83355 6.97216 7.02724 7.16970 7.40308 7.51306 7.65002 7.77493 7.85327 8.01068 8.33293 8.56315 8.67694 9.84472 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027487 B = 0.003854 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.410892 B = 7263.288627 C = 8196.204915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.200 4.200 3 C -0.056 4.056 4 C -0.211 4.211 5 C 0.022 3.978 6 C -0.094 4.094 7 C -0.136 4.136 8 C 0.091 3.909 9 F -0.141 7.141 10 C -0.050 4.050 11 C 0.263 3.737 12 N -0.423 5.423 13 C -0.075 4.075 14 C -0.075 4.075 15 C -0.168 4.168 16 C 0.126 3.874 17 C -0.437 4.437 18 H 0.088 0.912 19 C 0.073 3.927 20 N -0.774 5.774 21 Si 0.911 3.089 22 H -0.267 1.267 23 H -0.257 1.257 24 H -0.273 1.273 25 H 0.047 0.953 26 H 0.039 0.961 27 H 0.058 0.942 28 H 0.095 0.905 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.093 0.907 33 H 0.119 0.881 34 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.283 6.524 -1.632 7.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.201 4.201 3 C -0.074 4.074 4 C -0.212 4.212 5 C 0.021 3.979 6 C -0.113 4.113 7 C -0.155 4.155 8 C 0.069 3.931 9 F -0.120 7.120 10 C -0.055 4.055 11 C -0.052 4.052 12 N -0.098 5.098 13 C -0.096 4.096 14 C -0.094 4.094 15 C -0.188 4.188 16 C 0.123 3.877 17 C -0.465 4.465 18 H 0.106 0.894 19 C -0.148 4.148 20 N -0.397 5.397 21 Si 0.734 3.266 22 H -0.192 1.192 23 H -0.181 1.181 24 H -0.198 1.198 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.113 0.887 29 H 0.155 0.845 30 H 0.155 0.845 31 H 0.157 0.843 32 H 0.111 0.889 33 H 0.136 0.864 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.330 6.425 -1.472 6.600 hybrid contribution -0.454 -0.598 0.027 0.751 sum -0.784 5.827 -1.444 6.054 Atomic orbital electron populations 1.20417 0.93239 1.00335 1.00226 1.19456 0.94609 0.92970 1.13057 1.20242 0.92590 0.96233 0.98349 1.17872 0.92506 0.89938 1.20874 1.18937 0.91544 0.93724 0.93666 1.21302 1.00667 0.90544 0.98795 1.20881 0.91234 0.99816 1.03589 1.17481 0.90126 0.79358 1.06094 1.91475 1.81174 1.45217 1.94101 1.15877 0.84383 0.93880 1.11313 1.25526 0.92529 0.93638 0.93505 1.81182 1.11954 1.07352 1.09327 1.21163 0.93980 0.95561 0.98857 1.20511 0.97401 0.92442 0.99008 1.20969 0.94435 0.96688 1.06660 1.17621 0.91938 0.91784 0.86386 1.19810 1.02467 0.92611 1.31583 0.89436 1.26053 0.94109 1.01924 0.92735 1.69800 1.17513 1.32636 1.19714 0.86236 0.79653 0.80324 0.80358 1.19249 1.18106 1.19750 0.93442 0.94229 0.92317 0.88661 0.84494 0.84480 0.84298 0.88902 0.86358 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 9.61 36.00 0.35 -1.19 16 2 C -0.20 -4.20 5.90 -104.32 -0.62 -4.81 16 3 C -0.06 -1.07 8.99 -39.66 -0.36 -1.43 16 4 C -0.21 -4.03 5.90 -104.63 -0.62 -4.64 16 5 C 0.02 0.35 5.87 -104.93 -0.62 -0.27 16 6 C -0.09 -1.27 9.42 -39.12 -0.37 -1.64 16 7 C -0.14 -1.67 10.00 -39.62 -0.40 -2.06 16 8 C 0.09 1.26 7.28 -38.84 -0.28 0.98 16 9 F -0.14 -2.01 16.80 2.25 0.04 -1.97 16 10 C -0.05 -0.74 5.73 -106.88 -0.61 -1.35 16 11 C 0.26 4.15 14.96 -22.47 -0.34 3.81 16 12 N -0.42 -7.25 18.54 41.84 0.78 -6.48 16 13 C -0.08 -1.14 9.13 -38.76 -0.35 -1.49 16 14 C -0.08 -1.54 9.35 -39.66 -0.37 -1.92 16 15 C -0.17 -3.88 8.61 -39.28 -0.34 -4.22 16 16 C 0.13 2.94 5.56 -106.80 -0.59 2.35 16 17 C -0.44 -10.12 8.43 -37.87 -0.32 -10.44 16 18 H 0.09 1.92 6.27 -52.48 -0.33 1.59 16 19 C 0.07 1.61 5.15 -17.33 -0.09 1.52 16 20 N -0.77 -17.91 11.00 55.55 0.61 -17.30 16 21 Si 0.91 16.60 29.59 -169.99 -5.03 11.57 16 22 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 23 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 24 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.04 0.61 8.08 -51.93 -0.42 0.19 16 27 H 0.06 1.05 6.25 -51.93 -0.32 0.73 16 28 H 0.10 1.54 6.16 -52.49 -0.32 1.22 16 29 H 0.14 1.64 6.16 -52.49 -0.32 1.32 16 30 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.14 2.03 6.17 -52.49 -0.32 1.71 16 32 H 0.09 1.70 6.17 -52.49 -0.32 1.38 16 33 H 0.12 2.83 6.25 -52.48 -0.33 2.50 16 34 H 0.29 6.02 8.30 -40.82 -0.34 5.68 16 LS Contribution 303.14 15.07 4.57 4.57 Total: -1.00 -24.42 303.14 -7.63 -32.05 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -2.67 Total: 4.37 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -5.92 Total: -26.81 kcal Atomic # 7 Polarization: -25.16 SS G_CDS: 1.39 Total: -23.77 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 16.60 SS G_CDS: -5.03 Total: 11.57 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -24.42 -7.63 -32.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235895645.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.820 kcal (2) G-P(sol) polarization free energy of solvation -24.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds