Wall clock time and date at job start Tue Mar 31 2020 05:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36204 * 120.05682 * 2 1 4 4 C 1.40022 * 120.11559 * 179.97438 * 3 2 1 5 5 C 1.47799 * 119.88863 * 180.02562 * 4 3 2 6 6 C 1.41279 * 119.83230 * 359.73068 * 5 4 3 7 7 N 1.30566 * 122.52567 * 179.72077 * 6 5 4 8 8 C 1.33792 * 121.37755 * 0.56064 * 7 6 5 9 9 N 1.31158 * 137.95759 * 179.69354 * 8 7 6 10 10 O 1.21380 * 109.23869 * 180.02562 * 9 8 7 11 11 N 1.21458 * 116.30026 * 0.02562 * 10 9 8 12 12 C 1.31024 * 108.96603 * 359.97438 * 11 10 9 13 13 C 1.38610 * 119.83358 * 180.02562 * 5 4 3 14 14 C 1.40063 * 120.22578 * 0.02562 * 4 3 2 15 15 C 1.36170 * 120.11552 * 359.97438 * 14 4 3 16 16 C 1.40965 * 120.05836 * 179.97438 * 2 1 3 17 17 C 1.40926 * 120.11099 * 359.74947 * 16 2 1 18 18 H 1.08001 * 119.99964 * 333.58251 * 17 16 2 19 19 C 1.40074 * 120.00171 * 153.58745 * 17 16 2 20 20 N 1.30762 * 119.99966 * 344.01440 * 19 17 16 21 21 Si 1.86795 * 120.00157 * 164.01457 * 19 17 16 22 22 H 1.48505 * 109.46856 * 90.00140 * 21 19 17 23 23 H 1.48506 * 109.47324 * 209.99868 * 21 19 17 24 24 H 1.48496 * 109.47345 * 330.00224 * 21 19 17 25 25 H 1.08998 * 109.47037 * 270.02679 * 1 2 3 26 26 H 1.08999 * 109.46668 * 30.02167 * 1 2 3 27 27 H 1.08999 * 109.46538 * 150.01937 * 1 2 3 28 28 H 1.08003 * 119.94101 * 0.02562 * 3 2 1 29 29 H 1.07997 * 118.73626 * 359.97438 * 6 5 4 30 30 H 1.07999 * 121.13730 * 359.97438 * 13 5 4 31 31 H 1.08000 * 119.94474 * 179.97438 * 14 4 3 32 32 H 1.07999 * 120.06193 * 180.02562 * 15 14 4 33 33 H 0.96991 * 120.00173 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1892 1.1789 0.0000 4 6 3.5895 1.1803 0.0005 5 6 4.3247 2.4625 0.0011 6 6 3.6111 3.6818 -0.0047 7 7 4.2066 4.8437 0.0009 8 6 5.5408 4.9427 0.0013 9 7 6.4472 5.8907 0.0012 10 8 7.5519 5.3878 0.0013 11 7 7.5906 4.1739 0.0011 12 6 6.3657 3.7088 0.0013 13 6 5.7107 2.4626 0.0011 14 6 4.2958 -0.0292 0.0005 15 6 3.6232 -1.2132 0.0005 16 6 2.2131 -1.2201 0.0005 17 6 1.5121 -2.4426 0.0064 18 1 0.5184 -2.4933 0.4265 19 6 2.1041 -3.5920 -0.5324 20 7 3.1500 -3.4856 -1.3100 21 14 1.3996 -5.2770 -0.1402 22 1 0.3734 -5.6323 -1.1531 23 1 2.4884 -6.2866 -0.1635 24 1 0.7768 -5.2516 1.2076 25 1 -0.3633 0.0005 1.0276 26 1 -0.3632 0.8898 -0.5142 27 1 -0.3632 -0.8902 -0.5135 28 1 1.6492 2.1142 0.0004 29 1 2.5315 3.6516 -0.0098 30 1 6.2693 1.5382 0.0011 31 1 5.3758 -0.0228 0.0005 32 1 4.1687 -2.1453 0.0010 33 1 3.5602 -4.2815 -1.6828 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236030492.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:50 Heat of formation + Delta-G solvation = 159.429179 kcal Electronic energy + Delta-G solvation = -20249.760561 eV Core-core repulsion = 17052.368112 eV Total energy + Delta-G solvation = -3197.392449 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.38899 -39.57667 -37.99019 -34.76637 -34.40935 -33.19841 -32.86175 -31.17602 -29.71146 -27.18610 -25.74111 -25.57064 -24.05860 -21.74108 -21.14881 -19.99124 -18.92349 -18.75792 -17.90226 -17.58603 -16.16832 -15.58176 -15.13096 -14.15458 -14.08370 -13.79380 -13.67474 -13.30010 -12.92228 -12.83463 -12.71162 -11.97831 -11.90839 -11.86689 -11.59577 -11.47452 -11.38156 -11.30042 -11.05309 -10.81697 -10.09091 -9.83105 -9.75369 -9.54495 -9.33107 -8.95279 -7.79339 -7.42003 -7.20690 -4.72950 0.02364 1.08340 2.08090 2.51781 2.77465 2.82806 2.85240 2.91865 3.06182 3.57428 3.64000 3.69780 3.87535 4.30149 4.56380 4.88520 5.06075 5.26723 5.36850 5.64203 5.81810 5.86813 6.08561 6.12327 6.20954 6.39888 6.43416 6.54781 6.60352 6.74789 6.85625 7.00913 7.24201 7.43633 7.62259 7.64092 7.70708 7.83880 8.16807 8.38505 8.51466 8.68940 9.65660 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.034906 B = 0.003786 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.963342 B = 7393.046068 C = 8113.765891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.196 4.196 3 C -0.052 4.052 4 C -0.211 4.211 5 C 0.000 4.000 6 C 0.204 3.796 7 N -0.448 5.448 8 C 0.162 3.838 9 N -0.345 5.345 10 O 0.371 5.629 11 N -0.362 5.362 12 C -0.003 4.003 13 C -0.107 4.107 14 C -0.067 4.067 15 C -0.168 4.168 16 C 0.125 3.875 17 C -0.420 4.420 18 H 0.091 0.909 19 C 0.070 3.930 20 N -0.762 5.762 21 Si 0.915 3.085 22 H -0.265 1.265 23 H -0.272 1.272 24 H -0.256 1.256 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.181 0.819 30 H 0.149 0.851 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.484 2.710 1.463 3.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.197 4.197 3 C -0.070 4.070 4 C -0.214 4.214 5 C -0.006 4.006 6 C 0.016 3.984 7 N -0.160 5.160 8 C -0.097 4.097 9 N -0.068 5.068 10 O 0.137 5.863 11 N -0.090 5.090 12 C -0.156 4.156 13 C -0.135 4.135 14 C -0.086 4.086 15 C -0.187 4.187 16 C 0.122 3.878 17 C -0.447 4.447 18 H 0.109 0.891 19 C -0.153 4.153 20 N -0.384 5.384 21 Si 0.738 3.262 22 H -0.190 1.190 23 H -0.196 1.196 24 H -0.179 1.179 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.116 0.884 29 H 0.197 0.803 30 H 0.167 0.833 31 H 0.113 0.887 32 H 0.139 0.861 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.409 4.203 1.306 4.420 hybrid contribution -0.376 -2.039 -0.001 2.073 sum 0.033 2.164 1.305 2.528 Atomic orbital electron populations 1.20455 0.92947 1.01061 1.00123 1.19457 0.94770 0.92827 1.12660 1.20277 0.92375 0.96481 0.97896 1.17716 0.92356 0.89412 1.21885 1.19844 0.92343 0.94820 0.93588 1.23702 1.01082 0.85537 0.88068 1.67026 1.05249 1.28218 1.15541 1.23105 0.93587 0.87504 1.05525 1.75138 0.91568 1.20461 1.19595 1.85369 1.25087 1.15367 1.60471 1.75187 1.20281 0.92643 1.20918 1.23450 0.89127 0.99227 1.03765 1.20364 0.92866 0.93663 1.06607 1.20514 0.97590 0.92231 0.98262 1.20994 0.94357 0.96765 1.06621 1.17687 0.92020 0.91805 0.86302 1.19923 1.02228 0.92351 1.30209 0.89135 1.26166 0.94143 1.02325 0.92676 1.69766 1.16635 1.33033 1.18983 0.86169 0.79741 0.79690 0.80617 1.18953 1.19623 1.17948 0.93568 0.93833 0.91897 0.88401 0.80269 0.83341 0.88659 0.86141 0.89842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 9.39 36.01 0.34 -1.17 16 2 C -0.20 -3.92 5.90 -104.32 -0.62 -4.53 16 3 C -0.05 -0.95 8.99 -39.64 -0.36 -1.31 16 4 C -0.21 -3.96 5.90 -104.63 -0.62 -4.58 16 5 C 0.00 0.00 5.89 -104.70 -0.62 -0.61 16 6 C 0.20 3.20 10.53 -16.93 -0.18 3.02 16 7 N -0.45 -7.83 10.41 -12.48 -0.13 -7.96 16 8 C 0.16 2.96 8.85 -157.07 -1.39 1.57 16 9 N -0.34 -6.00 12.28 30.67 0.38 -5.62 16 10 O 0.37 5.97 11.66 26.97 0.31 6.28 16 11 N -0.36 -6.18 12.30 31.76 0.39 -5.79 16 12 C 0.00 -0.05 7.75 -83.05 -0.64 -0.69 16 13 C -0.11 -1.84 9.58 -38.48 -0.37 -2.21 16 14 C -0.07 -1.35 9.35 -39.64 -0.37 -1.72 16 15 C -0.17 -3.72 8.62 -39.28 -0.34 -4.06 16 16 C 0.13 2.79 5.56 -106.80 -0.59 2.20 16 17 C -0.42 -9.21 8.09 -37.88 -0.31 -9.52 16 18 H 0.09 1.87 6.89 -52.49 -0.36 1.51 16 19 C 0.07 1.46 5.16 -17.32 -0.09 1.37 16 20 N -0.76 -16.73 10.97 55.55 0.61 -16.12 16 21 Si 0.91 15.69 29.59 -169.99 -5.03 10.66 16 22 H -0.26 -4.52 7.11 56.52 0.40 -4.12 16 23 H -0.27 -4.62 7.11 56.52 0.40 -4.22 16 24 H -0.26 -4.37 7.11 56.52 0.40 -3.97 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.64 8.08 -51.93 -0.42 0.22 16 27 H 0.06 1.09 6.79 -51.93 -0.35 0.74 16 28 H 0.10 1.47 6.11 -52.48 -0.32 1.15 16 29 H 0.18 2.25 6.07 -52.49 -0.32 1.93 16 30 H 0.15 2.39 6.21 -52.49 -0.33 2.06 16 31 H 0.10 1.73 6.18 -52.49 -0.32 1.40 16 32 H 0.12 2.76 6.23 -52.49 -0.33 2.43 16 33 H 0.29 5.76 8.29 -40.82 -0.34 5.42 16 LS Contribution 287.06 15.07 4.33 4.33 Total: -1.00 -24.00 287.06 -7.60 -31.60 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -2.31 Total: 4.86 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -6.15 Total: -22.24 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 1.25 Total: -35.49 kcal Atomic # 8 Polarization: 5.97 SS G_CDS: 0.31 Total: 6.28 kcal Atomic # 14 Polarization: 15.69 SS G_CDS: -5.03 Total: 10.66 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -24.00 -7.60 -31.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236030492.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.028 kcal (2) G-P(sol) polarization free energy of solvation -24.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds