Wall clock time and date at job start Tue Mar 31 2020 05:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36204 * 120.05682 * 2 1 4 4 C 1.40022 * 120.11559 * 179.97438 * 3 2 1 5 5 C 1.47799 * 119.88863 * 180.02562 * 4 3 2 6 6 C 1.41279 * 119.83230 * 359.73068 * 5 4 3 7 7 N 1.30566 * 122.52567 * 179.72077 * 6 5 4 8 8 C 1.33792 * 121.37755 * 0.56064 * 7 6 5 9 9 N 1.31158 * 137.95759 * 179.69354 * 8 7 6 10 10 O 1.21380 * 109.23869 * 180.02562 * 9 8 7 11 11 N 1.21458 * 116.30026 * 0.02562 * 10 9 8 12 12 C 1.31024 * 108.96603 * 359.97438 * 11 10 9 13 13 C 1.38610 * 119.83358 * 180.02562 * 5 4 3 14 14 C 1.40063 * 120.22578 * 0.02562 * 4 3 2 15 15 C 1.36170 * 120.11552 * 359.97438 * 14 4 3 16 16 C 1.40965 * 120.05836 * 179.97438 * 2 1 3 17 17 C 1.40926 * 120.11099 * 359.74947 * 16 2 1 18 18 H 1.08001 * 119.99964 * 333.58251 * 17 16 2 19 19 C 1.40074 * 120.00171 * 153.58745 * 17 16 2 20 20 N 1.30762 * 119.99966 * 344.01440 * 19 17 16 21 21 Si 1.86795 * 120.00157 * 164.01457 * 19 17 16 22 22 H 1.48505 * 109.46856 * 90.00140 * 21 19 17 23 23 H 1.48506 * 109.47324 * 209.99868 * 21 19 17 24 24 H 1.48496 * 109.47345 * 330.00224 * 21 19 17 25 25 H 1.08998 * 109.47037 * 270.02679 * 1 2 3 26 26 H 1.08999 * 109.46668 * 30.02167 * 1 2 3 27 27 H 1.08999 * 109.46538 * 150.01937 * 1 2 3 28 28 H 1.08003 * 119.94101 * 0.02562 * 3 2 1 29 29 H 1.07997 * 118.73626 * 359.97438 * 6 5 4 30 30 H 1.07999 * 121.13730 * 359.97438 * 13 5 4 31 31 H 1.08000 * 119.94474 * 179.97438 * 14 4 3 32 32 H 1.07999 * 120.06193 * 180.02562 * 15 14 4 33 33 H 0.96991 * 120.00173 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1892 1.1789 0.0000 4 6 3.5895 1.1803 0.0005 5 6 4.3247 2.4625 0.0011 6 6 3.6111 3.6818 -0.0047 7 7 4.2066 4.8437 0.0009 8 6 5.5408 4.9427 0.0013 9 7 6.4472 5.8907 0.0012 10 8 7.5519 5.3878 0.0013 11 7 7.5906 4.1739 0.0011 12 6 6.3657 3.7088 0.0013 13 6 5.7107 2.4626 0.0011 14 6 4.2958 -0.0292 0.0005 15 6 3.6232 -1.2132 0.0005 16 6 2.2131 -1.2201 0.0005 17 6 1.5121 -2.4426 0.0064 18 1 0.5184 -2.4933 0.4265 19 6 2.1041 -3.5920 -0.5324 20 7 3.1500 -3.4856 -1.3100 21 14 1.3996 -5.2770 -0.1402 22 1 0.3734 -5.6323 -1.1531 23 1 2.4884 -6.2866 -0.1635 24 1 0.7768 -5.2516 1.2076 25 1 -0.3633 0.0005 1.0276 26 1 -0.3632 0.8898 -0.5142 27 1 -0.3632 -0.8902 -0.5135 28 1 1.6492 2.1142 0.0004 29 1 2.5315 3.6516 -0.0098 30 1 6.2693 1.5382 0.0011 31 1 5.3758 -0.0228 0.0005 32 1 4.1687 -2.1453 0.0010 33 1 3.5602 -4.2815 -1.6828 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236030492.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:50 Heat of formation + Delta-G solvation = 149.420239 kcal Electronic energy + Delta-G solvation = -20250.194581 eV Core-core repulsion = 17052.368112 eV Total energy + Delta-G solvation = -3197.826469 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.78308 -40.96739 -39.47027 -36.20130 -35.86954 -34.60494 -34.28149 -32.65428 -31.20612 -28.64424 -27.15930 -26.94740 -25.53433 -23.22546 -22.56974 -21.45783 -20.34122 -20.14887 -19.31362 -19.09603 -17.60078 -17.00825 -16.54678 -15.60783 -15.56017 -15.15678 -15.13867 -14.65531 -14.33889 -14.23468 -14.12061 -13.43246 -13.32316 -13.29633 -13.01396 -12.89515 -12.78098 -12.72983 -12.48832 -12.19658 -11.55233 -11.28989 -11.24593 -10.96792 -10.72225 -10.39889 -9.30587 -8.95897 -8.72223 -6.33696 -1.30972 -0.30353 0.67256 1.07294 1.21751 1.41159 1.50307 1.55645 1.71219 2.15842 2.27043 2.29413 2.47805 2.78972 3.21062 3.55329 3.70390 3.79283 3.92144 4.24186 4.36122 4.47610 4.70618 4.76807 4.77754 5.03034 5.07113 5.14897 5.16995 5.30276 5.41384 5.46779 5.72801 5.92225 6.10403 6.13659 6.29134 6.30062 6.60913 6.82870 6.96360 7.32516 8.17274 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.034906 B = 0.003786 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.963342 B = 7393.046068 C = 8113.765891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.211 4.211 3 C -0.053 4.053 4 C -0.205 4.205 5 C -0.002 4.002 6 C 0.217 3.783 7 N -0.459 5.459 8 C 0.152 3.848 9 N -0.350 5.350 10 O 0.393 5.607 11 N -0.359 5.359 12 C -0.018 4.018 13 C -0.096 4.096 14 C -0.076 4.076 15 C -0.195 4.195 16 C 0.097 3.903 17 C -0.457 4.457 18 H 0.093 0.907 19 C 0.035 3.965 20 N -0.802 5.802 21 Si 0.979 3.021 22 H -0.261 1.261 23 H -0.270 1.270 24 H -0.255 1.255 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.138 0.862 29 H 0.216 0.784 30 H 0.156 0.844 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.036 4.360 1.744 4.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.212 4.212 3 C -0.071 4.071 4 C -0.208 4.208 5 C -0.008 4.008 6 C 0.030 3.970 7 N -0.171 5.171 8 C -0.108 4.108 9 N -0.072 5.072 10 O 0.154 5.846 11 N -0.084 5.084 12 C -0.171 4.171 13 C -0.124 4.124 14 C -0.094 4.094 15 C -0.214 4.214 16 C 0.094 3.906 17 C -0.484 4.484 18 H 0.111 0.889 19 C -0.183 4.183 20 N -0.426 5.426 21 Si 0.800 3.200 22 H -0.185 1.185 23 H -0.195 1.195 24 H -0.178 1.178 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.156 0.844 29 H 0.232 0.768 30 H 0.174 0.826 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.164 5.839 1.589 6.053 hybrid contribution 0.020 -2.216 -0.071 2.217 sum -0.144 3.623 1.518 3.931 Atomic orbital electron populations 1.20447 0.90972 1.01699 1.01034 1.19869 0.96492 0.92623 1.12252 1.20655 0.92250 0.97606 0.96610 1.17878 0.92939 0.89459 1.20478 1.19817 0.92222 0.94774 0.94012 1.24158 1.02425 0.84249 0.86168 1.67137 1.04792 1.28751 1.16454 1.23359 0.94182 0.87606 1.05607 1.75143 0.91680 1.20466 1.19865 1.85369 1.24735 1.14945 1.59532 1.75184 1.20183 0.92988 1.20073 1.23545 0.89369 0.99418 1.04755 1.20589 0.93268 0.93916 1.04610 1.20713 0.98392 0.92323 0.97987 1.20954 0.94840 0.96805 1.08814 1.18044 0.92333 0.93187 0.87037 1.20096 1.02804 0.93250 1.32233 0.88927 1.26872 0.94225 1.05211 0.92012 1.69822 1.18293 1.33887 1.20587 0.85221 0.78926 0.75665 0.80238 1.18549 1.19473 1.17841 0.92422 0.91289 0.93125 0.84411 0.76796 0.82624 0.87471 0.88121 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.74 9.39 71.24 0.67 -2.07 16 2 C -0.21 -8.25 5.90 -19.67 -0.12 -8.37 16 3 C -0.05 -1.81 8.99 22.23 0.20 -1.61 16 4 C -0.21 -7.31 5.90 -19.87 -0.12 -7.43 16 5 C 0.00 -0.06 5.89 -19.91 -0.12 -0.18 16 6 C 0.22 5.99 10.53 85.63 0.90 6.89 16 7 N -0.46 -14.56 10.41 -197.32 -2.05 -16.61 16 8 C 0.15 5.13 8.85 137.63 1.22 6.34 16 9 N -0.35 -11.34 12.28 -60.82 -0.75 -12.08 16 10 O 0.39 11.74 11.66 139.48 1.63 13.37 16 11 N -0.36 -11.43 12.30 -58.14 -0.71 -12.15 16 12 C -0.02 -0.60 7.75 42.60 0.33 -0.27 16 13 C -0.10 -3.09 9.58 22.98 0.22 -2.87 16 14 C -0.08 -3.03 9.35 22.23 0.21 -2.82 16 15 C -0.19 -8.92 8.62 22.47 0.19 -8.72 16 16 C 0.10 4.44 5.56 -21.27 -0.12 4.32 16 17 C -0.46 -20.73 8.09 23.37 0.19 -20.54 16 18 H 0.09 3.96 6.89 -2.91 -0.02 3.94 16 19 C 0.04 1.54 5.16 85.30 0.44 1.98 16 20 N -0.80 -36.97 10.97 21.85 0.24 -36.73 16 21 Si 0.98 33.02 29.59 68.60 2.03 35.05 16 22 H -0.26 -8.53 7.11 99.48 0.71 -7.82 16 23 H -0.27 -8.90 7.11 99.48 0.71 -8.19 16 24 H -0.25 -8.41 7.11 99.48 0.71 -7.71 16 25 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 1.83 8.08 -2.39 -0.02 1.81 16 27 H 0.05 1.74 6.79 -2.39 -0.02 1.72 16 28 H 0.14 3.48 6.11 -2.91 -0.02 3.46 16 29 H 0.22 4.25 6.07 -2.91 -0.02 4.24 16 30 H 0.16 4.73 6.21 -2.91 -0.02 4.71 16 31 H 0.11 3.87 6.18 -2.91 -0.02 3.86 16 32 H 0.10 4.91 6.23 -2.91 -0.02 4.89 16 33 H 0.29 12.24 8.29 -92.72 -0.77 11.47 16 Total: -1.00 -52.12 287.06 5.67 -46.45 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: 1.19 Total: 18.06 kcal Atomic # 6 Polarization: -39.46 SS G_CDS: 4.10 Total: -35.36 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -3.28 Total: -77.57 kcal Atomic # 8 Polarization: 11.74 SS G_CDS: 1.63 Total: 13.37 kcal Atomic # 14 Polarization: 33.02 SS G_CDS: 2.03 Total: 35.05 kcal Total: -52.12 5.67 -46.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236030492.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.872 kcal (2) G-P(sol) polarization free energy of solvation -52.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds