Wall clock time and date at job start Tue Mar 31 2020 05:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36201 * 119.94181 * 2 1 4 4 C 1.40967 * 119.88423 * 179.97438 * 3 2 1 5 5 C 1.40923 * 120.11180 * 179.97438 * 4 3 2 6 6 H 1.08007 * 119.99952 * 24.70205 * 5 4 3 7 7 C 1.40075 * 120.00130 * 204.70956 * 5 4 3 8 8 N 1.30761 * 120.00025 * 17.94734 * 7 5 4 9 9 Si 1.86800 * 119.99845 * 197.95295 * 7 5 4 10 10 H 1.48496 * 109.47303 * 89.99956 * 9 7 5 11 11 H 1.48507 * 109.46869 * 209.99790 * 9 7 5 12 12 H 1.48500 * 109.47493 * 329.99685 * 9 7 5 13 13 C 1.41003 * 119.77775 * 0.02562 * 4 3 2 14 14 C 1.36165 * 119.88546 * 359.69445 * 13 4 3 15 15 C 1.40029 * 119.94240 * 179.97438 * 2 1 3 16 16 C 1.47795 * 119.88856 * 0.02562 * 15 2 1 17 17 C 1.41284 * 119.83120 * 310.01789 * 16 15 2 18 18 N 1.30569 * 122.52604 * 180.24570 * 17 16 15 19 19 C 1.33785 * 121.37369 * 359.50802 * 18 17 16 20 20 N 1.31161 * 137.95267 * 180.11792 * 19 18 17 21 21 O 1.21378 * 109.24327 * 180.29963 * 20 19 18 22 22 N 1.21468 * 116.29694 * 0.02562 * 21 20 19 23 23 C 1.31027 * 108.96553 * 0.02562 * 22 21 20 24 24 C 1.38612 * 119.83594 * 129.99664 * 16 15 2 25 25 H 1.09003 * 109.47112 * 270.01733 * 1 2 3 26 26 H 1.08999 * 109.47425 * 30.02184 * 1 2 3 27 27 H 1.09004 * 109.47474 * 150.02392 * 1 2 3 28 28 H 1.08000 * 120.05599 * 359.97438 * 3 2 1 29 29 H 0.96996 * 119.99758 * 180.02562 * 8 7 5 30 30 H 1.08006 * 120.05753 * 180.02562 * 13 4 3 31 31 H 1.07994 * 119.94761 * 180.29340 * 14 13 4 32 32 H 1.08002 * 118.73907 * 359.97438 * 17 16 15 33 33 H 1.08003 * 121.13493 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1868 1.1802 0.0000 4 6 3.5965 1.1788 0.0005 5 6 4.3047 2.3971 0.0000 6 1 3.8413 3.2913 0.3901 7 6 5.6096 2.4485 -0.5066 8 7 6.0470 1.4929 -1.2847 9 14 6.7250 3.8821 -0.0706 10 1 7.4831 3.5614 1.1653 11 1 7.6756 4.1264 -1.1850 12 1 5.9031 5.0983 0.1545 13 6 4.2955 -0.0457 0.0005 14 6 3.6066 -1.2203 0.0063 15 6 2.2059 -1.2134 0.0005 16 6 1.4632 -2.4911 0.0005 17 6 0.4282 -2.7025 0.9388 18 7 -0.2582 -3.8120 0.9889 19 6 -0.0216 -4.8165 0.1375 20 7 -0.4861 -6.0192 -0.1032 21 8 0.1289 -6.5079 -1.0285 22 7 1.0031 -5.8201 -1.5166 23 6 1.0502 -4.6760 -0.8797 24 6 1.7851 -3.4760 -0.9202 25 1 -0.3633 0.0003 1.0277 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3634 -0.8902 -0.5135 28 1 1.6467 2.1155 -0.0004 29 1 6.9507 1.5283 -1.6351 30 1 5.3756 -0.0521 0.0014 31 1 4.1410 -2.1587 0.0111 32 1 0.1990 -1.9178 1.6446 33 1 2.5732 -3.3279 -1.6437 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236031863.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:22 Heat of formation + Delta-G solvation = 159.483206 kcal Electronic energy + Delta-G solvation = -20393.121975 eV Core-core repulsion = 17195.731869 eV Total energy + Delta-G solvation = -3197.390106 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -46.52883 -39.72109 -37.87233 -34.83533 -34.54281 -33.24273 -32.51159 -31.59509 -29.68446 -26.76978 -26.16810 -25.56907 -24.06908 -21.44664 -21.05442 -20.34465 -19.19018 -18.88473 -18.11310 -17.23074 -15.97465 -15.61212 -15.23091 -14.35787 -14.19621 -13.92018 -13.49217 -13.24388 -13.03647 -12.88586 -12.73780 -12.22037 -11.91363 -11.87626 -11.78476 -11.69328 -11.31050 -11.21956 -10.83679 -10.67152 -10.13256 -9.85202 -9.66890 -9.51916 -9.46059 -8.85930 -7.75019 -7.45606 -7.12623 -4.66367 -0.04396 1.05957 2.02174 2.47130 2.82397 2.88940 2.92338 2.94414 2.96504 3.49174 3.56151 3.67106 3.73709 4.25519 4.49177 4.83372 5.04220 5.28651 5.33447 5.54496 5.71916 5.74693 5.88518 6.06392 6.08486 6.23790 6.34527 6.43262 6.68523 6.73111 6.93213 7.02807 7.30974 7.47557 7.60521 7.74162 7.78501 7.94041 8.29338 8.52001 8.55762 8.62953 9.78967 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.036297 B = 0.003821 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.234946 B = 7325.604479 C = 7875.356173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.026 4.026 3 C -0.224 4.224 4 C 0.123 3.877 5 C -0.438 4.438 6 H 0.085 0.915 7 C 0.073 3.927 8 N -0.770 5.770 9 Si 0.913 3.087 10 H -0.264 1.264 11 H -0.275 1.275 12 H -0.259 1.259 13 C -0.174 4.174 14 C -0.064 4.064 15 C -0.220 4.220 16 C -0.004 4.004 17 C 0.213 3.787 18 N -0.453 5.453 19 C 0.174 3.826 20 N -0.345 5.345 21 O 0.378 5.622 22 N -0.351 5.351 23 C -0.017 4.017 24 C -0.065 4.065 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.098 0.902 29 H 0.287 0.713 30 H 0.120 0.880 31 H 0.091 0.909 32 H 0.182 0.818 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.975 -3.277 1.429 5.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.026 4.026 3 C -0.244 4.244 4 C 0.120 3.880 5 C -0.466 4.466 6 H 0.103 0.897 7 C -0.148 4.148 8 N -0.393 5.393 9 Si 0.737 3.263 10 H -0.189 1.189 11 H -0.200 1.200 12 H -0.182 1.182 13 C -0.193 4.193 14 C -0.083 4.083 15 C -0.223 4.223 16 C -0.011 4.011 17 C 0.025 3.975 18 N -0.166 5.166 19 C -0.086 4.086 20 N -0.069 5.069 21 O 0.141 5.859 22 N -0.076 5.076 23 C -0.171 4.171 24 C -0.092 4.092 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.117 0.883 29 H 0.099 0.901 30 H 0.138 0.862 31 H 0.110 0.890 32 H 0.198 0.802 33 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.743 -4.797 1.413 6.892 hybrid contribution 1.488 1.490 -0.284 2.125 sum -3.255 -3.307 1.129 4.775 Atomic orbital electron populations 1.20895 0.93622 1.01545 1.01141 1.19042 0.93418 0.92541 0.97596 1.20529 0.94101 0.95507 1.14226 1.17739 0.91028 0.93236 0.85990 1.19804 0.97377 0.96299 1.33090 0.89672 1.26086 0.98597 0.97673 0.92480 1.69782 1.18082 1.31380 1.20034 0.86203 0.79617 0.81136 0.79339 1.18887 1.19980 1.18250 1.20976 0.99831 0.91295 1.07171 1.20425 0.91993 0.97236 0.98635 1.17537 0.92425 0.88326 1.23987 1.19902 0.94105 0.94774 0.92272 1.23911 0.87772 0.91782 0.93989 1.67078 1.27738 0.99268 1.22490 1.23159 0.94932 0.93623 0.96881 1.75188 1.17308 1.08895 1.05475 1.85398 1.31034 1.38022 1.31443 1.75212 1.08285 1.04402 1.19723 1.23555 1.00938 0.95825 0.96738 1.20759 1.00243 0.88423 0.99809 0.91868 0.92078 0.92988 0.88348 0.90131 0.86215 0.89036 0.80164 0.83057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.71 8.41 36.00 0.30 -1.40 16 2 C -0.03 -0.48 5.82 -104.68 -0.61 -1.09 16 3 C -0.22 -4.70 9.36 -39.28 -0.37 -5.07 16 4 C 0.12 2.86 5.57 -106.80 -0.60 2.26 16 5 C -0.44 -10.16 9.03 -37.88 -0.34 -10.50 16 6 H 0.09 1.88 7.91 -52.48 -0.42 1.47 16 7 C 0.07 1.61 5.13 -17.32 -0.09 1.52 16 8 N -0.77 -17.61 10.96 55.55 0.61 -17.00 16 9 Si 0.91 16.45 29.60 -169.99 -5.03 11.42 16 10 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 11 H -0.27 -4.89 7.11 56.52 0.40 -4.48 16 12 H -0.26 -4.62 7.11 56.52 0.40 -4.21 16 13 C -0.17 -3.93 8.63 -39.28 -0.34 -4.27 16 14 C -0.06 -1.30 9.43 -39.64 -0.37 -1.67 16 15 C -0.22 -4.12 5.48 -104.63 -0.57 -4.69 16 16 C 0.00 -0.07 4.72 -104.69 -0.49 -0.56 16 17 C 0.21 3.21 8.97 -16.93 -0.15 3.06 16 18 N -0.45 -7.56 10.41 -12.48 -0.13 -7.69 16 19 C 0.17 3.01 8.85 -157.07 -1.39 1.62 16 20 N -0.35 -5.70 12.28 30.68 0.38 -5.33 16 21 O 0.38 5.73 11.66 26.97 0.31 6.05 16 22 N -0.35 -5.66 12.30 31.77 0.39 -5.27 16 23 C -0.02 -0.29 7.75 -83.05 -0.64 -0.93 16 24 C -0.06 -1.06 9.67 -38.48 -0.37 -1.43 16 25 H 0.06 0.80 7.44 -51.93 -0.39 0.41 16 26 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 27 H 0.05 0.75 6.43 -51.93 -0.33 0.42 16 28 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 29 H 0.29 5.95 8.29 -40.82 -0.34 5.61 16 30 H 0.12 2.83 6.16 -52.48 -0.32 2.50 16 31 H 0.09 1.69 8.03 -52.49 -0.42 1.27 16 32 H 0.18 2.28 6.74 -52.49 -0.35 1.92 16 33 H 0.15 2.37 8.05 -52.48 -0.42 1.95 16 LS Contribution 290.55 15.07 4.38 4.38 Total: -1.00 -24.35 290.55 -7.76 -32.11 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -2.63 Total: 4.48 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -6.04 Total: -23.15 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 1.25 Total: -35.29 kcal Atomic # 8 Polarization: 5.73 SS G_CDS: 0.31 Total: 6.05 kcal Atomic # 14 Polarization: 16.45 SS G_CDS: -5.03 Total: 11.42 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -24.35 -7.76 -32.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236031863.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.596 kcal (2) G-P(sol) polarization free energy of solvation -24.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds