Wall clock time and date at job start Tue Mar 31 2020 05:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36215 * 119.94494 * 2 1 4 4 C 1.40953 * 119.88814 * 179.76836 * 3 2 1 5 5 C 1.40956 * 120.11340 * 180.23504 * 4 3 2 6 6 H 1.08001 * 119.99922 * 330.34745 * 5 4 3 7 7 C 1.40056 * 120.00448 * 150.36072 * 5 4 3 8 8 N 1.30764 * 120.00249 * 161.73658 * 7 5 4 9 9 Si 1.86799 * 119.99611 * 341.72946 * 7 5 4 10 10 H 1.48504 * 109.47113 * 95.42068 * 9 7 5 11 11 H 1.48501 * 109.47365 * 215.42169 * 9 7 5 12 12 H 1.48499 * 109.47301 * 335.41788 * 9 7 5 13 13 C 1.40988 * 119.77615 * 0.48247 * 4 3 2 14 14 C 1.36180 * 119.88640 * 359.50028 * 13 4 3 15 15 C 1.40019 * 119.94504 * 179.97438 * 2 1 3 16 16 C 1.47794 * 119.88513 * 0.02562 * 15 2 1 17 17 C 1.39773 * 120.00843 * 244.97452 * 16 15 2 18 18 C 1.36530 * 120.16146 * 179.97438 * 17 16 15 19 19 C 1.39862 * 120.18216 * 0.02562 * 18 17 16 20 20 C 1.43193 * 119.99304 * 180.02562 * 19 18 17 21 21 N 7.61284 * 69.05961 * 179.80785 * 2 1 3 22 22 C 1.39772 * 120.01243 * 359.97438 * 19 18 17 23 23 C 1.37895 * 119.84006 * 359.74198 * 22 19 18 24 24 F 1.35105 * 120.08913 * 180.27856 * 23 22 19 25 25 H 1.09000 * 109.46653 * 270.02038 * 1 2 3 26 26 H 1.08997 * 109.47246 * 30.01754 * 1 2 3 27 27 H 1.08999 * 109.46837 * 150.02240 * 1 2 3 28 28 H 1.07999 * 120.05701 * 359.97438 * 3 2 1 29 29 H 0.96999 * 119.99931 * 179.97438 * 8 7 5 30 30 H 1.08006 * 120.05958 * 179.77000 * 13 4 3 31 31 H 1.08003 * 119.94614 * 180.22992 * 14 13 4 32 32 H 1.08000 * 119.92144 * 0.02562 * 17 16 15 33 33 H 1.08003 * 119.91022 * 180.02562 * 18 17 16 34 34 H 1.08004 * 120.08398 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1869 1.1803 0.0000 4 6 3.5965 1.1789 0.0049 5 6 4.3048 2.3975 0.0100 6 1 3.8751 3.2738 -0.4525 7 6 5.5661 2.4720 0.6144 8 7 6.3726 3.4598 0.3249 9 14 6.0960 1.1603 1.8342 10 1 6.8959 0.1250 1.1315 11 1 6.9195 1.7814 2.9025 12 1 4.8940 0.5316 2.4384 13 6 4.2954 -0.0455 -0.0004 14 6 3.6065 -1.2201 -0.0001 15 6 2.2059 -1.2133 0.0005 16 6 1.4632 -2.4910 0.0005 17 6 1.5541 -3.3524 1.0975 18 6 0.8689 -4.5333 1.1010 19 6 0.0728 -4.8876 0.0070 20 6 -0.6446 -6.1269 0.0152 21 7 -1.2138 -7.1100 0.0238 22 6 -0.0235 -4.0318 -1.0939 23 6 0.6637 -2.8363 -1.0957 24 9 0.5697 -2.0026 -2.1547 25 1 -0.3632 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6470 2.1156 -0.0004 29 1 7.2459 3.5115 0.7438 30 1 5.3755 -0.0519 -0.0004 31 1 4.1410 -2.1586 -0.0005 32 1 2.1672 -3.0829 1.9448 33 1 0.9417 -5.1957 1.9510 34 1 -0.6382 -4.3041 -1.9391 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236532231.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:52 Heat of formation + Delta-G solvation = 17.966541 kcal Electronic energy + Delta-G solvation = -20324.990560 eV Core-core repulsion = 17101.543869 eV Total energy + Delta-G solvation = -3223.446691 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.65439 -39.46813 -38.02796 -36.42120 -34.17926 -32.30372 -31.74363 -30.73207 -29.56526 -26.35702 -25.83860 -23.15011 -22.59033 -20.83685 -20.32857 -19.22357 -17.22607 -16.53014 -16.48521 -15.91070 -15.62442 -15.31361 -14.20358 -14.00692 -13.97028 -13.93717 -13.67315 -13.45522 -13.09429 -12.87806 -12.73984 -12.48323 -12.28934 -11.91917 -11.90808 -11.68085 -11.52393 -11.16261 -10.89063 -10.65064 -10.36638 -9.99884 -9.77150 -9.27597 -9.05087 -8.62592 -7.82048 -7.52166 -7.15116 -4.65114 0.59447 1.18692 2.30404 2.51188 2.61196 2.85033 3.00327 3.12023 3.20084 3.68312 3.72915 3.83977 4.25409 4.43561 4.75700 4.90039 5.05771 5.21441 5.29989 5.60699 5.73324 5.75410 5.97203 5.98718 6.04284 6.13835 6.18954 6.34969 6.40891 6.44147 6.68984 6.72552 6.81550 7.01068 7.31753 7.33629 7.47593 7.62209 7.73245 7.95145 8.16888 8.49798 8.60984 9.85715 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.029809 B = 0.004428 C = 0.004075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.102875 B = 6321.814476 C = 6869.409862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.017 4.017 3 C -0.212 4.212 4 C 0.104 3.896 5 C -0.433 4.433 6 H 0.093 0.907 7 C 0.082 3.918 8 N -0.795 5.795 9 Si 0.916 3.084 10 H -0.268 1.268 11 H -0.290 1.290 12 H -0.241 1.241 13 C -0.246 4.246 14 C -0.041 4.041 15 C -0.226 4.226 16 C 0.021 3.979 17 C -0.100 4.100 18 C -0.075 4.075 19 C -0.034 4.034 20 C 0.265 3.735 21 N -0.429 5.429 22 C -0.105 4.105 23 C 0.091 3.909 24 F -0.126 7.126 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.103 0.897 29 H 0.289 0.711 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.141 0.859 33 H 0.133 0.867 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.488 -9.513 1.797 11.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.017 4.017 3 C -0.231 4.231 4 C 0.100 3.900 5 C -0.460 4.460 6 H 0.111 0.889 7 C -0.139 4.139 8 N -0.417 5.417 9 Si 0.742 3.258 10 H -0.194 1.194 11 H -0.217 1.217 12 H -0.164 1.164 13 C -0.265 4.265 14 C -0.059 4.059 15 C -0.227 4.227 16 C 0.019 3.981 17 C -0.118 4.118 18 C -0.096 4.096 19 C -0.038 4.038 20 C -0.050 4.050 21 N -0.104 5.104 22 C -0.126 4.126 23 C 0.072 3.928 24 F -0.104 7.104 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.121 0.879 29 H 0.099 0.901 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.159 0.841 33 H 0.151 0.849 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.146 -10.795 1.766 13.066 hybrid contribution 0.695 0.169 0.209 0.745 sum -6.451 -10.626 1.975 12.587 Atomic orbital electron populations 1.20858 0.93378 1.01817 1.01157 1.19110 0.93761 0.92451 0.96371 1.20530 0.93774 0.95762 1.13008 1.17777 0.91941 0.92578 0.87659 1.19603 0.99260 0.97046 1.30071 0.88855 1.26307 0.94902 0.96282 0.96418 1.69666 1.07601 1.29841 1.34616 0.86236 0.80016 0.79994 0.79595 1.19409 1.21700 1.16443 1.20669 0.98227 0.92785 1.14805 1.20274 0.92231 0.96791 0.96595 1.17647 0.92336 0.89286 1.23433 1.19288 0.92850 0.94785 0.91129 1.20995 0.99660 0.93058 0.98064 1.20841 0.95055 0.96899 0.96778 1.15622 1.01501 0.89701 0.96935 1.25634 0.93124 0.92742 0.93490 1.81240 1.09919 1.11389 1.07879 1.20956 1.00240 0.92830 0.98568 1.17636 1.00477 0.89001 0.85709 1.91533 1.94677 1.70290 1.53893 0.92176 0.92203 0.92498 0.87916 0.90055 0.88019 0.88558 0.84126 0.84888 0.84301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.84 9.46 36.01 0.34 -1.50 16 2 C -0.02 -0.32 5.70 -104.68 -0.60 -0.92 16 3 C -0.21 -4.60 9.36 -39.28 -0.37 -4.97 16 4 C 0.10 2.46 5.11 -106.80 -0.55 1.91 16 5 C -0.43 -10.97 9.55 -37.87 -0.36 -11.34 16 6 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 7 C 0.08 2.01 5.40 -17.32 -0.09 1.92 16 8 N -0.79 -19.95 13.92 55.55 0.77 -19.17 16 9 Si 0.92 19.37 24.51 -169.99 -4.17 15.20 16 10 H -0.27 -5.50 6.70 56.52 0.38 -5.12 16 11 H -0.29 -5.93 7.11 56.52 0.40 -5.53 16 12 H -0.24 -5.18 6.87 56.52 0.39 -4.79 16 13 C -0.25 -5.49 7.10 -39.28 -0.28 -5.77 16 14 C -0.04 -0.80 9.66 -39.64 -0.38 -1.19 16 15 C -0.23 -4.22 5.03 -104.64 -0.53 -4.74 16 16 C 0.02 0.32 4.63 -104.75 -0.48 -0.17 16 17 C -0.10 -1.22 9.66 -39.62 -0.38 -1.60 16 18 C -0.08 -0.77 9.68 -39.59 -0.38 -1.15 16 19 C -0.03 -0.37 5.74 -106.79 -0.61 -0.99 16 20 C 0.26 3.13 15.32 -22.47 -0.34 2.79 16 21 N -0.43 -5.88 18.54 41.84 0.78 -5.10 16 22 C -0.10 -1.21 9.73 -39.13 -0.38 -1.59 16 23 C 0.09 1.29 5.74 -39.05 -0.22 1.07 16 24 F -0.13 -2.01 15.52 2.25 0.03 -1.98 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 27 H 0.06 0.86 4.70 -51.93 -0.24 0.61 16 28 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 29 H 0.29 6.52 8.29 -40.82 -0.34 6.18 16 30 H 0.10 2.27 4.73 -52.48 -0.25 2.02 16 31 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 32 H 0.14 1.59 8.06 -52.49 -0.42 1.17 16 33 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 34 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 302.33 15.07 4.56 4.56 Total: -1.00 -26.01 302.33 -6.69 -32.70 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -3.04 Total: 2.02 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -5.62 Total: -28.22 kcal Atomic # 7 Polarization: -25.82 SS G_CDS: 1.55 Total: -24.27 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.03 Total: -1.98 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.17 Total: 15.20 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -26.01 -6.69 -32.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236532231.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.667 kcal (2) G-P(sol) polarization free energy of solvation -26.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds