Wall clock time and date at job start Tue Mar 31 2020 05:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36223 * 120.05760 * 2 1 4 4 C 1.40012 * 120.11791 * 179.97438 * 3 2 1 5 5 C 1.47793 * 119.89204 * 180.02562 * 4 3 2 6 6 C 1.39768 * 120.01081 * 309.73543 * 5 4 3 7 7 C 1.36532 * 120.16400 * 179.70745 * 6 5 4 8 8 C 1.39862 * 120.17828 * 0.55928 * 7 6 5 9 9 C 1.43199 * 119.99489 * 179.69168 * 8 7 6 10 10 N 8.95801 * 127.56393 * 359.88587 * 2 1 3 11 11 C 1.39785 * 120.01268 * 359.71689 * 8 7 6 12 12 C 1.37892 * 119.83883 * 359.97438 * 11 8 7 13 13 F 1.35098 * 120.08875 * 179.97438 * 12 11 8 14 14 C 1.40058 * 120.22348 * 0.02562 * 4 3 2 15 15 C 1.36190 * 120.10994 * 0.04148 * 14 4 3 16 16 C 1.40952 * 120.06051 * 179.97438 * 2 1 3 17 17 C 1.40957 * 120.11042 * 359.74790 * 16 2 1 18 18 H 1.08004 * 119.99757 * 333.58382 * 17 16 2 19 19 C 1.40056 * 120.00234 * 153.57948 * 17 16 2 20 20 N 1.30770 * 119.99740 * 344.03001 * 19 17 16 21 21 Si 1.86795 * 120.00137 * 164.02440 * 19 17 16 22 22 H 1.48498 * 109.47095 * 60.00330 * 21 19 17 23 23 H 1.48494 * 109.47412 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.47222 * 300.00659 * 21 19 17 25 25 H 1.09005 * 109.46855 * 270.01923 * 1 2 3 26 26 H 1.08995 * 109.47295 * 30.02330 * 1 2 3 27 27 H 1.09008 * 109.46723 * 150.02491 * 1 2 3 28 28 H 1.08000 * 119.94196 * 359.97438 * 3 2 1 29 29 H 1.08007 * 119.91616 * 359.97049 * 6 5 4 30 30 H 1.07997 * 119.90917 * 180.25105 * 7 6 5 31 31 H 1.07994 * 120.08018 * 180.02562 * 11 8 7 32 32 H 1.07992 * 119.94611 * 179.97438 * 14 4 3 33 33 H 1.07997 * 120.05250 * 180.02562 * 15 14 4 34 34 H 0.97005 * 119.99458 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1893 1.1790 0.0000 4 6 3.5894 1.1805 0.0005 5 6 4.3246 2.4626 0.0011 6 6 4.0016 3.4541 -0.9295 7 6 4.6747 4.6420 -0.9280 8 6 5.6988 4.8685 -0.0028 9 6 6.4067 6.1133 -0.0089 10 7 6.9682 7.1008 -0.0141 11 6 6.0319 3.8798 0.9276 12 6 5.3482 2.6823 0.9307 13 9 5.6663 1.7231 1.8272 14 6 4.2957 -0.0289 0.0005 15 6 3.6229 -1.2130 -0.0008 16 6 2.2130 -1.2199 0.0005 17 6 1.5119 -2.4427 0.0065 18 1 0.5182 -2.4934 0.4265 19 6 2.1038 -3.5920 -0.5324 20 7 3.1498 -3.4855 -1.3100 21 14 1.3991 -5.2770 -0.1404 22 1 -0.0087 -5.3457 -0.6079 23 1 2.2009 -6.3210 -0.8277 24 1 1.4452 -5.5038 1.3265 25 1 -0.3633 0.0003 1.0277 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3633 -0.8903 -0.5135 28 1 1.6493 2.1143 -0.0004 29 1 3.2146 3.2818 -1.6489 30 1 4.4189 5.4068 -1.6463 31 1 6.8223 4.0537 1.6427 32 1 5.3756 -0.0226 0.0005 33 1 4.1684 -2.1451 -0.0004 34 1 3.5600 -4.2815 -1.6829 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236532468.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:55 Heat of formation + Delta-G solvation = 3.749814 kcal Electronic energy + Delta-G solvation = -20029.015661 eV Core-core repulsion = 16804.952486 eV Total energy + Delta-G solvation = -3224.063174 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.75973 -40.46451 -39.37402 -37.47581 -35.69627 -33.87545 -32.55294 -31.66827 -30.62144 -27.99591 -26.91365 -24.65368 -23.66602 -22.43250 -21.21075 -20.20454 -19.12095 -17.61556 -17.28171 -16.96428 -16.88057 -16.51335 -15.73346 -15.50086 -14.96098 -14.93715 -14.88435 -14.46261 -14.32194 -14.22980 -13.70162 -13.63912 -13.38972 -13.16008 -13.05481 -12.86449 -12.78944 -12.57348 -12.30743 -12.21133 -12.01246 -11.36274 -11.18568 -11.03139 -10.08409 -9.79634 -9.23710 -8.94049 -8.63456 -6.29769 -0.43079 0.25635 0.92847 1.22714 1.39981 1.49760 1.52554 1.57247 1.91222 2.19765 2.68294 2.72517 2.85003 3.44826 3.69186 3.88193 3.91996 4.08836 4.32679 4.46886 4.50605 4.69812 4.77983 4.91270 5.06419 5.08398 5.10040 5.15620 5.25876 5.28097 5.38941 5.43840 5.52716 5.78813 5.79400 6.04386 6.17454 6.19071 6.38534 6.40757 6.69299 6.92956 7.05415 8.29171 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033924 B = 0.003817 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.179015 B = 7334.468355 C = 7738.609284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.215 4.215 3 C -0.060 4.060 4 C -0.207 4.207 5 C -0.005 4.005 6 C -0.098 4.098 7 C -0.053 4.053 8 C -0.029 4.029 9 C 0.288 3.712 10 N -0.459 5.459 11 C -0.089 4.089 12 C 0.066 3.934 13 F -0.146 7.146 14 C -0.079 4.079 15 C -0.194 4.194 16 C 0.093 3.907 17 C -0.478 4.478 18 H 0.085 0.915 19 C 0.035 3.965 20 N -0.816 5.816 21 Si 0.978 3.022 22 H -0.256 1.256 23 H -0.271 1.271 24 H -0.262 1.262 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.049 0.951 28 H 0.125 0.875 29 H 0.154 0.846 30 H 0.168 0.832 31 H 0.158 0.842 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.046 8.422 0.388 8.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.217 4.217 3 C -0.078 4.078 4 C -0.208 4.208 5 C -0.007 4.007 6 C -0.115 4.115 7 C -0.073 4.073 8 C -0.032 4.032 9 C -0.026 4.026 10 N -0.134 5.134 11 C -0.110 4.110 12 C 0.047 3.953 13 F -0.125 7.125 14 C -0.098 4.098 15 C -0.213 4.213 16 C 0.090 3.910 17 C -0.506 4.506 18 H 0.103 0.897 19 C -0.182 4.182 20 N -0.441 5.441 21 Si 0.799 3.201 22 H -0.180 1.180 23 H -0.195 1.195 24 H -0.186 1.186 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.143 0.857 29 H 0.172 0.828 30 H 0.186 0.814 31 H 0.175 0.825 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.002 9.781 0.257 9.835 hybrid contribution 0.004 -1.814 0.345 1.846 sum 1.006 7.967 0.602 8.053 Atomic orbital electron populations 1.20395 0.91248 1.01425 1.00644 1.19874 0.96342 0.92781 1.12664 1.20493 0.92310 0.96952 0.98005 1.18168 0.93093 0.90628 1.18905 1.19345 0.93220 0.94504 0.93591 1.21036 1.00972 0.91780 0.97760 1.21107 0.92197 0.97391 0.96583 1.15622 0.99010 0.87915 1.00684 1.25499 0.92354 0.92283 0.92457 1.81275 1.10421 1.12308 1.09431 1.21042 1.00011 0.90579 0.99384 1.17775 0.98947 0.87334 0.91243 1.91479 1.91980 1.63038 1.65954 1.20558 0.97540 0.92605 0.99095 1.20907 0.94948 0.96571 1.08896 1.17935 0.92129 0.93129 0.87809 1.19871 1.02794 0.93476 1.34502 0.89656 1.26814 0.94343 1.05010 0.91999 1.69851 1.19105 1.33372 1.21797 0.85294 0.79453 0.75742 0.79583 1.17989 1.19506 1.18641 0.92911 0.91546 0.93155 0.85730 0.82848 0.81420 0.82470 0.88978 0.88566 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.96 9.38 71.24 0.67 -2.29 16 2 C -0.22 -9.51 5.90 -19.67 -0.12 -9.63 16 3 C -0.06 -2.34 9.07 22.23 0.20 -2.14 16 4 C -0.21 -8.24 5.33 -19.88 -0.11 -8.34 16 5 C 0.00 -0.15 5.48 -19.95 -0.11 -0.26 16 6 C -0.10 -2.26 9.43 22.24 0.21 -2.06 16 7 C -0.05 -0.95 9.68 22.26 0.22 -0.73 16 8 C -0.03 -0.58 5.74 -21.27 -0.12 -0.70 16 9 C 0.29 6.27 15.32 88.33 1.35 7.62 16 10 N -0.46 -11.90 18.54 19.00 0.35 -11.55 16 11 C -0.09 -2.01 9.73 22.56 0.22 -1.79 16 12 C 0.07 1.97 7.15 22.62 0.16 2.13 16 13 F -0.15 -5.06 15.87 44.97 0.71 -4.35 16 14 C -0.08 -3.62 8.78 22.23 0.20 -3.43 16 15 C -0.19 -9.93 8.62 22.47 0.19 -9.73 16 16 C 0.09 4.70 5.56 -21.28 -0.12 4.58 16 17 C -0.48 -24.04 8.09 23.38 0.19 -23.85 16 18 H 0.09 4.07 6.89 -2.91 -0.02 4.05 16 19 C 0.03 1.66 5.16 85.29 0.44 2.10 16 20 N -0.82 -41.06 10.97 21.85 0.24 -40.82 16 21 Si 0.98 36.32 29.59 68.60 2.03 38.35 16 22 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 23 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 24 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 25 H 0.05 1.80 8.14 -2.38 -0.02 1.79 16 26 H 0.07 2.04 8.08 -2.39 -0.02 2.02 16 27 H 0.05 1.95 6.79 -2.38 -0.02 1.93 16 28 H 0.12 4.01 8.03 -2.91 -0.02 3.99 16 29 H 0.15 3.18 8.03 -2.91 -0.02 3.16 16 30 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 31 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 32 H 0.09 3.99 7.76 -2.91 -0.02 3.97 16 33 H 0.10 5.23 6.22 -2.91 -0.02 5.21 16 34 H 0.29 13.23 8.29 -92.70 -0.77 12.46 16 Total: -1.00 -57.71 309.06 7.95 -49.76 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 1.14 Total: 17.14 kcal Atomic # 6 Polarization: -52.00 SS G_CDS: 3.48 Total: -48.52 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: 0.59 Total: -52.37 kcal Atomic # 9 Polarization: -5.06 SS G_CDS: 0.71 Total: -4.35 kcal Atomic # 14 Polarization: 36.32 SS G_CDS: 2.03 Total: 38.35 kcal Total: -57.71 7.95 -49.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236532468.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.507 kcal (2) G-P(sol) polarization free energy of solvation -57.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds