Wall clock time and date at job start Tue Mar 31 2020 05:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37973 * 120.04733 * 2 1 4 4 C 1.38546 * 120.09668 * 179.97438 * 3 2 1 5 5 F 1.35101 * 119.89955 * 179.97438 * 4 3 2 6 6 C 1.38592 * 120.20153 * 359.74799 * 4 3 2 7 7 C 1.37926 * 120.09665 * 0.50780 * 6 4 3 8 8 C 1.39378 * 120.04940 * 179.97438 * 2 1 3 9 9 C 1.48292 * 120.10071 * 0.02562 * 8 2 1 10 10 C 1.39828 * 119.53698 * 310.01241 * 9 8 2 11 11 C 1.37703 * 121.17503 * 180.02562 * 10 9 8 12 12 C 1.39592 * 120.18337 * 0.02562 * 11 10 9 13 13 C 1.43193 * 120.45719 * 180.02562 * 12 11 10 14 14 N 7.63446 * 68.59730 * 179.17408 * 2 1 3 15 15 C 1.46544 * 119.08680 * 359.97438 * 12 11 10 16 16 C 1.40841 * 120.54929 * 180.02562 * 15 12 11 17 17 H 1.08004 * 119.99759 * 24.38429 * 16 15 12 18 18 C 1.40232 * 120.00473 * 204.37973 * 16 15 12 19 19 N 1.30660 * 119.99641 * 17.28569 * 18 16 15 20 20 Si 1.86801 * 120.00646 * 197.28988 * 18 16 15 21 21 H 1.48502 * 109.46932 * 59.99722 * 20 18 16 22 22 H 1.48491 * 109.47273 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46900 * 299.99867 * 20 18 16 24 24 C 1.38613 * 119.53674 * 129.75172 * 9 8 2 25 25 H 1.09001 * 109.47017 * 270.02005 * 1 2 3 26 26 H 1.08992 * 109.46751 * 30.02446 * 1 2 3 27 27 H 1.09001 * 109.46359 * 150.02216 * 1 2 3 28 28 H 1.07995 * 119.95520 * 359.95751 * 3 2 1 29 29 H 1.07998 * 119.95289 * 180.27775 * 6 4 3 30 30 H 1.07999 * 120.05279 * 179.77414 * 7 6 4 31 31 H 1.08002 * 119.41218 * 359.97438 * 10 9 8 32 32 H 1.07997 * 119.91129 * 180.02562 * 11 10 9 33 33 H 0.96997 * 120.00258 * 184.61048 * 19 18 16 34 34 H 1.07995 * 120.13900 * 359.97438 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1979 1.1943 0.0000 4 6 3.5834 1.1955 0.0005 5 9 4.2558 2.3673 0.0000 6 6 4.2816 -0.0017 0.0063 7 6 3.5993 -1.2003 0.0010 8 6 2.2050 -1.2065 0.0005 9 6 1.4669 -2.4926 0.0005 10 6 0.4450 -2.7010 0.9320 11 6 -0.2617 -3.8824 0.9624 12 6 0.0345 -4.9010 0.0550 13 6 -0.6971 -6.1317 0.0811 14 7 -1.2789 -7.1072 0.1025 15 6 1.1036 -4.6931 -0.9254 16 6 1.4277 -5.6998 -1.8555 17 1 0.6895 -6.4385 -2.1308 18 6 2.7088 -5.7429 -2.4242 19 7 3.6931 -5.0884 -1.8674 20 14 3.0082 -6.7360 -3.9778 21 1 2.1478 -6.2164 -5.0709 22 1 4.4348 -6.6186 -4.3731 23 1 2.6799 -8.1620 -3.7247 24 6 1.7960 -3.4694 -0.9263 25 1 -0.3633 0.0004 1.0277 26 1 -0.3632 0.8897 -0.5142 27 1 -0.3632 -0.8902 -0.5135 28 1 1.6580 2.1296 -0.0007 29 1 5.3615 0.0040 0.0113 30 1 4.1441 -2.1328 0.0019 31 1 0.2063 -1.9217 1.6406 32 1 -1.0473 -4.0214 1.6904 33 1 4.5627 -5.0632 -2.2963 34 1 2.5844 -3.2931 -1.6430 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239737877.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:23 Heat of formation + Delta-G solvation = -1.532039 kcal Electronic energy + Delta-G solvation = -20285.123629 eV Core-core repulsion = 17060.831417 eV Total energy + Delta-G solvation = -3224.292213 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.82586 -40.58986 -38.93092 -36.93379 -35.83168 -33.75438 -32.99767 -31.61308 -29.79066 -27.99475 -27.35055 -24.66127 -23.10393 -22.59344 -21.84514 -19.45839 -18.85627 -18.07159 -17.43272 -17.20511 -16.57958 -16.53632 -15.69970 -15.15469 -15.10922 -14.66250 -14.54132 -14.46395 -14.32210 -14.12524 -13.99103 -13.46626 -13.44913 -13.14608 -13.03123 -12.92186 -12.65571 -12.55263 -12.41240 -12.08831 -11.87361 -11.56549 -11.43108 -11.13052 -9.87439 -9.71348 -9.46385 -8.98133 -8.71689 -6.50629 -0.07845 0.36247 0.61623 1.03751 1.36686 1.45432 1.52955 2.06363 2.13814 2.32248 2.67556 2.75950 3.32722 3.61884 3.66937 3.89349 3.91879 3.99965 4.29059 4.42515 4.50502 4.71987 4.81628 4.95690 4.97870 4.99113 5.05537 5.12306 5.22256 5.26834 5.35027 5.43851 5.51511 5.67821 5.80906 5.96676 6.03186 6.12181 6.17570 6.47162 6.68033 6.80686 6.99771 8.09442 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.015794 B = 0.005626 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.368653 B = 4975.942116 C = 6397.599372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.048 4.048 3 C -0.154 4.154 4 C 0.082 3.918 5 F -0.146 7.146 6 C -0.160 4.160 7 C -0.081 4.081 8 C -0.059 4.059 9 C -0.007 4.007 10 C -0.218 4.218 11 C -0.027 4.027 12 C -0.209 4.209 13 C 0.305 3.695 14 N -0.534 5.534 15 C 0.131 3.869 16 C -0.467 4.467 17 H 0.067 0.933 18 C 0.049 3.951 19 N -0.783 5.783 20 Si 0.970 3.030 21 H -0.258 1.258 22 H -0.256 1.256 23 H -0.270 1.270 24 C -0.161 4.161 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.157 0.843 29 H 0.148 0.852 30 H 0.129 0.871 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.300 0.700 34 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.187 12.871 1.179 13.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.048 4.048 3 C -0.172 4.172 4 C 0.063 3.937 5 F -0.125 7.125 6 C -0.179 4.179 7 C -0.100 4.100 8 C -0.059 4.059 9 C -0.008 4.008 10 C -0.237 4.237 11 C -0.047 4.047 12 C -0.215 4.215 13 C -0.004 4.004 14 N -0.214 5.214 15 C 0.126 3.874 16 C -0.494 4.494 17 H 0.085 0.915 18 C -0.172 4.172 19 N -0.406 5.406 20 Si 0.791 3.209 21 H -0.182 1.182 22 H -0.179 1.179 23 H -0.194 1.194 24 C -0.180 4.180 25 H 0.108 0.892 26 H 0.102 0.898 27 H 0.084 0.916 28 H 0.175 0.825 29 H 0.166 0.834 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.145 0.855 33 H 0.112 0.888 34 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.596 11.411 1.244 11.589 hybrid contribution 0.749 -0.325 -0.695 1.072 sum 2.344 11.086 0.550 11.344 Atomic orbital electron populations 1.20960 0.88907 1.03510 1.03676 1.20011 0.97562 0.90634 0.96588 1.21100 0.91857 0.99656 1.04603 1.17854 0.90652 0.80948 1.04214 1.91462 1.80682 1.46189 1.94163 1.21159 1.01485 0.90682 1.04573 1.21221 0.93408 0.98015 0.97314 1.19086 0.93160 0.92696 1.00943 1.18649 0.94893 0.91749 0.95494 1.20484 1.00686 0.98621 1.03900 1.20685 0.97417 0.91672 0.94928 1.17229 1.07248 0.90668 1.06348 1.26069 0.90968 0.92583 0.90734 1.81001 1.14678 1.12821 1.12881 1.18608 0.88450 0.92193 0.88188 1.19806 0.97756 1.11115 1.20752 0.91512 1.26627 0.94434 0.95990 1.00155 1.69682 1.02780 1.32400 1.35723 0.85407 0.79018 0.78808 0.77715 1.18191 1.17948 1.19432 1.21269 1.03100 0.92020 1.01600 0.89246 0.89826 0.91613 0.82508 0.83396 0.85353 0.85113 0.85545 0.88821 0.86527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.56 8.43 71.24 0.60 -1.96 16 2 C -0.05 -1.29 5.86 -19.65 -0.12 -1.40 16 3 C -0.15 -3.71 9.67 22.28 0.22 -3.50 16 4 C 0.08 2.15 7.30 22.43 0.16 2.32 16 5 F -0.15 -3.76 17.26 44.97 0.78 -2.98 16 6 C -0.16 -4.32 10.01 22.28 0.22 -4.09 16 7 C -0.08 -2.55 9.47 22.48 0.21 -2.33 16 8 C -0.06 -1.91 5.44 -20.04 -0.11 -2.02 16 9 C -0.01 -0.25 4.72 -20.13 -0.09 -0.35 16 10 C -0.22 -7.51 7.81 22.53 0.18 -7.34 16 11 C -0.03 -0.99 9.74 22.47 0.22 -0.77 16 12 C -0.21 -9.34 5.95 -19.54 -0.12 -9.46 16 13 C 0.30 14.30 14.28 88.33 1.26 15.56 16 14 N -0.53 -25.86 18.54 19.00 0.35 -25.50 16 15 C 0.13 6.27 5.73 -19.90 -0.11 6.15 16 16 C -0.47 -23.15 8.58 23.39 0.20 -22.95 16 17 H 0.07 3.43 7.37 -2.91 -0.02 3.41 16 18 C 0.05 2.21 5.16 85.35 0.44 2.65 16 19 N -0.78 -35.14 10.95 21.87 0.24 -34.90 16 20 Si 0.97 35.20 29.60 68.60 2.03 37.23 16 21 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 22 H -0.26 -8.48 7.11 99.48 0.71 -7.78 16 23 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 24 C -0.16 -7.08 8.11 22.94 0.19 -6.90 16 25 H 0.09 1.71 7.46 -2.39 -0.02 1.70 16 26 H 0.08 1.47 8.09 -2.39 -0.02 1.45 16 27 H 0.06 1.75 6.45 -2.39 -0.02 1.73 16 28 H 0.16 2.89 8.06 -2.91 -0.02 2.87 16 29 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 30 H 0.13 4.25 8.03 -2.91 -0.02 4.23 16 31 H 0.13 3.72 6.76 -2.91 -0.02 3.70 16 32 H 0.13 4.00 8.06 -2.91 -0.02 3.97 16 33 H 0.30 12.01 8.30 -92.71 -0.77 11.24 16 34 H 0.12 5.36 6.13 -2.91 -0.02 5.34 16 Total: -1.00 -53.15 306.67 7.89 -45.26 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 1.15 Total: 17.27 kcal Atomic # 6 Polarization: -39.73 SS G_CDS: 3.35 Total: -36.38 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: 0.59 Total: -60.40 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.78 Total: -2.98 kcal Atomic # 14 Polarization: 35.20 SS G_CDS: 2.03 Total: 37.23 kcal Total: -53.15 7.89 -45.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239737877.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.725 kcal (2) G-P(sol) polarization free energy of solvation -53.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds