Wall clock time and date at job start Tue Mar 31 2020 05:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38305 * 119.89106 * 2 1 4 4 C 1.37995 * 120.15461 * 179.74155 * 3 2 1 5 5 C 1.39404 * 119.92283 * 0.51403 * 4 3 2 6 6 C 1.48321 * 120.11398 * 179.74618 * 5 4 3 7 7 C 1.39810 * 119.53685 * 179.72692 * 6 5 4 8 8 C 1.37723 * 121.17060 * 180.02562 * 7 6 5 9 9 C 1.39572 * 120.18834 * 0.02562 * 8 7 6 10 10 C 1.43200 * 120.45974 * 179.97438 * 9 8 7 11 11 N 9.03043 * 142.95836 * 359.96844 * 3 1 2 12 12 C 1.46536 * 119.08593 * 0.25327 * 9 8 7 13 13 C 1.40844 * 120.55616 * 179.70225 * 12 9 8 14 14 H 1.07997 * 119.99518 * 24.39075 * 13 12 9 15 15 C 1.40235 * 119.99921 * 204.39927 * 13 12 9 16 16 N 1.30659 * 120.00390 * 17.28846 * 15 13 12 17 17 Si 1.86798 * 119.99496 * 197.29142 * 15 13 12 18 18 H 1.48495 * 109.47299 * 59.99951 * 17 15 13 19 19 H 1.48504 * 109.47181 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47445 * 299.99566 * 17 15 13 21 21 C 1.38599 * 119.53502 * 359.74137 * 6 5 4 22 22 C 1.39327 * 119.77485 * 359.46849 * 5 4 3 23 23 C 1.38256 * 119.84900 * 0.27403 * 22 5 4 24 24 F 1.35097 * 119.96460 * 180.02562 * 23 22 5 25 25 H 1.08992 * 109.47100 * 270.02266 * 1 2 3 26 26 H 1.09012 * 109.46639 * 30.02182 * 1 2 3 27 27 H 1.08997 * 109.47324 * 150.01649 * 1 2 3 28 28 H 1.08003 * 119.92229 * 0.02562 * 3 2 1 29 29 H 1.08003 * 120.03891 * 180.28027 * 4 3 2 30 30 H 1.08003 * 119.41876 * 0.03713 * 7 6 5 31 31 H 1.08000 * 119.90538 * 180.02562 * 8 7 6 32 32 H 0.97000 * 119.99868 * 184.60195 * 16 15 13 33 33 H 1.08004 * 120.13453 * 0.02562 * 21 6 5 34 34 H 1.08001 * 120.07549 * 180.30045 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1991 0.0000 4 6 3.5762 1.2054 0.0054 5 6 4.2772 0.0005 0.0000 6 6 5.7604 0.0024 0.0001 7 6 6.4512 -1.2131 0.0004 8 6 7.8279 -1.2506 0.0010 9 6 8.5623 -0.0638 0.0018 10 6 9.9939 -0.0960 0.0030 11 7 11.1296 -0.1215 0.0030 12 6 7.8482 1.2158 0.0077 13 6 8.5583 2.4321 0.0149 14 1 9.5667 2.4709 -0.3699 15 6 7.9561 3.5926 0.5220 16 7 6.8982 3.5005 1.2833 17 14 8.6663 5.2702 0.1088 18 1 8.6445 5.4682 -1.3627 19 1 7.8527 6.3268 0.7621 20 1 10.0662 5.3493 0.5982 21 6 6.4421 1.2091 0.0001 22 6 3.5798 -1.2057 0.0004 23 6 2.1972 -1.2012 0.0004 24 9 1.5186 -2.3694 0.0013 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8899 -0.5142 27 1 -0.3634 -0.8901 -0.5136 28 1 1.6532 2.1326 0.0004 29 1 4.1125 2.1429 0.0099 30 1 5.8954 -2.1392 0.0000 31 1 8.3407 -2.2011 0.0009 32 1 6.4423 4.3039 1.5793 33 1 5.8954 2.1406 0.0004 34 1 4.1179 -2.1421 0.0011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239821013.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:34 Heat of formation + Delta-G solvation = -0.602661 kcal Electronic energy + Delta-G solvation = -20070.103662 eV Core-core repulsion = 16845.851750 eV Total energy + Delta-G solvation = -3224.251912 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.84076 -40.47092 -39.00963 -37.00378 -35.91499 -34.21942 -31.99511 -31.46721 -31.05002 -27.57636 -27.47636 -24.11881 -24.00210 -22.36663 -21.84497 -19.57050 -18.95915 -18.14639 -17.23551 -16.93245 -16.70322 -16.61652 -15.69341 -15.54621 -14.88163 -14.80479 -14.58246 -14.43973 -14.24559 -14.09695 -13.76414 -13.56218 -13.46113 -13.29639 -13.22850 -12.95317 -12.78370 -12.42951 -12.30244 -12.18301 -12.05722 -11.65446 -11.32846 -11.15985 -10.15409 -9.70642 -9.52136 -8.91832 -8.63921 -6.53311 -0.27732 0.31383 0.78237 1.00513 1.38222 1.47080 1.54222 2.03386 2.14772 2.27580 2.65766 2.87795 3.29359 3.59789 3.69687 3.80131 3.84474 4.05054 4.24114 4.37569 4.45238 4.63903 4.73880 4.82711 4.88067 4.96727 5.04440 5.12795 5.18993 5.19155 5.30050 5.45053 5.50294 5.54899 5.77250 5.92523 6.02297 6.09232 6.15428 6.43359 6.64820 6.76459 6.96485 8.08635 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.017054 B = 0.005175 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.431749 B = 5409.220385 C = 6966.000422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.127 4.127 3 C -0.088 4.088 4 C -0.122 4.122 5 C -0.024 4.024 6 C -0.019 4.019 7 C -0.232 4.232 8 C -0.026 4.026 9 C -0.210 4.210 10 C 0.305 3.695 11 N -0.531 5.531 12 C 0.128 3.872 13 C -0.463 4.463 14 H 0.068 0.932 15 C 0.049 3.951 16 N -0.782 5.782 17 Si 0.974 3.026 18 H -0.257 1.257 19 H -0.253 1.253 20 H -0.271 1.271 21 C -0.159 4.159 22 C -0.149 4.149 23 C 0.079 3.921 24 F -0.144 7.144 25 H 0.082 0.918 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.160 0.840 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.303 0.697 33 H 0.131 0.869 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.057 -0.561 -1.561 15.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.128 4.128 3 C -0.106 4.106 4 C -0.140 4.140 5 C -0.024 4.024 6 C -0.020 4.020 7 C -0.251 4.251 8 C -0.046 4.046 9 C -0.216 4.216 10 C -0.003 4.003 11 N -0.211 5.211 12 C 0.123 3.877 13 C -0.490 4.490 14 H 0.086 0.914 15 C -0.172 4.172 16 N -0.405 5.405 17 Si 0.794 3.206 18 H -0.181 1.181 19 H -0.177 1.177 20 H -0.196 1.196 21 C -0.177 4.177 22 C -0.168 4.168 23 C 0.060 3.940 24 F -0.123 7.123 25 H 0.100 0.900 26 H 0.109 0.891 27 H 0.086 0.914 28 H 0.178 0.822 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.144 0.856 32 H 0.114 0.886 33 H 0.149 0.851 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.479 -0.520 -1.349 13.556 hybrid contribution 0.352 0.357 -0.003 0.501 sum -13.127 -0.163 -1.352 13.198 Atomic orbital electron populations 1.20773 0.88186 1.04089 1.03533 1.20275 0.98416 0.91341 1.02758 1.21115 0.93034 0.98113 0.98338 1.21559 0.94872 0.97953 0.99649 1.18845 0.92265 0.93022 0.98286 1.18746 0.90984 0.93891 0.98358 1.20531 0.93132 0.96758 1.14724 1.20678 0.93846 0.95295 0.94801 1.17228 0.82996 0.95189 1.26223 1.26015 0.92972 0.90700 0.90661 1.80993 1.13172 1.10706 1.16265 1.18649 0.92308 0.90310 0.86439 1.19836 1.01180 0.93792 1.34227 0.91370 1.26670 0.94780 1.04527 0.91238 1.69692 1.16226 1.34418 1.20161 0.85352 0.79164 0.75878 0.80198 1.18063 1.17674 1.19609 1.21430 0.92979 0.97019 1.06312 1.21298 0.92335 0.99491 1.03680 1.17534 0.89673 0.81402 1.05390 1.91441 1.80073 1.46512 1.94229 0.89960 0.89073 0.91383 0.82206 0.85227 0.85229 0.85569 0.88552 0.85124 0.83832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 9.83 71.24 0.70 -1.13 16 2 C -0.13 -3.03 5.89 -19.78 -0.12 -3.15 16 3 C -0.09 -2.13 9.68 22.23 0.22 -1.92 16 4 C -0.12 -3.76 9.41 22.49 0.21 -3.55 16 5 C -0.02 -0.82 5.87 -20.05 -0.12 -0.94 16 6 C -0.02 -0.74 5.86 -20.13 -0.12 -0.86 16 7 C -0.23 -8.68 9.37 22.53 0.21 -8.47 16 8 C -0.03 -1.02 9.74 22.47 0.22 -0.80 16 9 C -0.21 -9.69 5.95 -19.55 -0.12 -9.80 16 10 C 0.30 14.57 14.28 88.33 1.26 15.83 16 11 N -0.53 -26.07 18.54 19.00 0.35 -25.72 16 12 C 0.13 6.23 5.73 -19.90 -0.11 6.11 16 13 C -0.46 -22.89 8.58 23.39 0.20 -22.69 16 14 H 0.07 3.49 7.37 -2.91 -0.02 3.47 16 15 C 0.05 2.17 5.16 85.35 0.44 2.62 16 16 N -0.78 -34.45 10.95 21.87 0.24 -34.21 16 17 Si 0.97 34.35 29.60 68.60 2.03 36.38 16 18 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 19 H -0.25 -8.06 7.11 99.48 0.71 -7.35 16 20 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 21 C -0.16 -7.07 8.06 22.94 0.18 -6.89 16 22 C -0.15 -4.54 9.39 22.54 0.21 -4.33 16 23 C 0.08 2.19 7.23 22.34 0.16 2.35 16 24 F -0.14 -3.89 16.46 44.97 0.74 -3.15 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.09 1.15 8.08 -2.38 -0.02 1.13 16 27 H 0.07 1.14 7.63 -2.39 -0.02 1.12 16 28 H 0.16 2.79 8.06 -2.91 -0.02 2.76 16 29 H 0.13 4.15 6.15 -2.91 -0.02 4.13 16 30 H 0.13 4.04 6.10 -2.91 -0.02 4.02 16 31 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 32 H 0.30 11.72 8.30 -92.71 -0.77 10.95 16 33 H 0.13 5.77 4.24 -2.91 -0.01 5.76 16 34 H 0.14 4.02 6.13 -2.91 -0.02 4.00 16 Total: -1.00 -54.30 305.15 7.96 -46.34 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 1.16 Total: 17.96 kcal Atomic # 6 Polarization: -41.03 SS G_CDS: 3.43 Total: -37.60 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: 0.59 Total: -59.93 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.74 Total: -3.15 kcal Atomic # 14 Polarization: 34.35 SS G_CDS: 2.03 Total: 36.38 kcal Total: -54.30 7.96 -46.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239821013.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.738 kcal (2) G-P(sol) polarization free energy of solvation -54.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds