Wall clock time and date at job start Tue Mar 31 2020 05:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38378 * 119.86616 * 2 1 4 4 C 1.37930 * 120.16631 * 179.69672 * 3 2 1 5 5 C 1.39612 * 119.90561 * 0.55552 * 4 3 2 6 6 C 1.48039 * 120.12668 * 179.72028 * 5 4 3 7 7 C 1.39965 * 119.49383 * 179.72302 * 6 5 4 8 8 C 1.36016 * 121.18884 * 179.97438 * 7 6 5 9 9 C 1.41035 * 120.10771 * 0.04607 * 8 7 6 10 10 C 1.40458 * 120.48930 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99757 * 208.74162 * 10 9 8 12 12 C 1.40307 * 119.99987 * 28.73749 * 10 9 8 13 13 N 1.30626 * 120.00065 * 197.54027 * 12 10 9 14 14 Si 1.86804 * 120.00025 * 17.54320 * 12 10 9 15 15 H 1.48499 * 109.47037 * 269.99973 * 14 12 10 16 16 H 1.48504 * 109.46874 * 30.00102 * 14 12 10 17 17 H 1.48491 * 109.47000 * 149.99591 * 14 12 10 18 18 C 1.46634 * 119.02386 * 0.25202 * 9 8 7 19 19 C 1.43199 * 120.56769 * 179.70642 * 18 9 8 20 20 N 8.36068 * 155.65800 * 0.34970 * 2 1 3 21 21 C 1.39100 * 118.86712 * 359.44315 * 18 9 8 22 22 C 1.39521 * 119.74248 * 359.44269 * 5 4 3 23 23 C 1.38190 * 119.83306 * 0.28091 * 22 5 4 24 24 F 1.35096 * 119.95865 * 180.02562 * 23 22 5 25 25 H 1.09005 * 109.47425 * 270.02396 * 1 2 3 26 26 H 1.09004 * 109.47227 * 30.02631 * 1 2 3 27 27 H 1.09000 * 109.46913 * 150.02314 * 1 2 3 28 28 H 1.07999 * 119.91600 * 359.97438 * 3 2 1 29 29 H 1.08006 * 120.04622 * 180.27460 * 4 3 2 30 30 H 1.07997 * 119.40813 * 0.02562 * 7 6 5 31 31 H 1.08002 * 119.94475 * 180.02562 * 8 7 6 32 32 H 0.97005 * 120.00080 * 355.45632 * 13 12 10 33 33 H 1.07997 * 120.10037 * 180.26514 * 21 18 9 34 34 H 1.08001 * 120.08858 * 180.29921 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.2000 0.0000 4 6 3.5753 1.2072 0.0063 5 6 4.2777 0.0007 0.0010 6 6 5.7581 0.0028 0.0015 7 6 6.4489 -1.2145 0.0020 8 6 7.8086 -1.2528 0.0019 9 6 8.5501 -0.0532 0.0023 10 6 9.9544 -0.0834 0.0028 11 1 10.5117 0.7249 0.4528 12 6 10.6330 -1.1636 -0.5813 13 7 11.8893 -1.3777 -0.2946 14 14 9.7400 -2.2956 -1.7691 15 1 9.1199 -3.4144 -1.0149 16 1 8.6833 -1.5323 -2.4805 17 1 10.7070 -2.8396 -2.7560 18 6 7.8335 1.2262 0.0084 19 6 8.5534 2.4640 0.0153 20 7 9.1244 3.4461 0.0210 21 6 6.4426 1.2168 0.0018 22 6 3.5791 -1.2070 0.0011 23 6 2.1972 -1.2018 0.0005 24 9 1.5182 -2.3697 0.0012 25 1 -0.3634 0.0004 1.0277 26 1 -0.3634 0.8898 -0.5143 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6525 2.1332 -0.0004 29 1 4.1112 2.1450 0.0108 30 1 5.8924 -2.1400 0.0016 31 1 8.3211 -2.2035 0.0019 32 1 12.3713 -0.7530 0.2697 33 1 5.8947 2.1475 0.0018 34 1 4.1169 -2.1436 0.0018 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239821066.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:44 Heat of formation + Delta-G solvation = -5.261544 kcal Electronic energy + Delta-G solvation = -19961.742987 eV Core-core repulsion = 16737.289051 eV Total energy + Delta-G solvation = -3224.453936 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.80681 -40.52699 -39.18100 -37.15296 -36.11715 -34.19095 -32.37170 -31.73355 -31.18230 -28.46198 -26.03000 -24.71369 -23.30691 -22.95596 -22.00434 -20.27995 -19.39276 -17.71146 -17.26475 -17.15011 -16.57932 -16.27438 -16.15302 -15.80484 -15.14181 -14.95575 -14.75545 -14.52924 -14.21807 -14.05247 -13.98387 -13.83557 -13.64820 -13.46350 -13.11700 -12.85479 -12.68767 -12.57001 -12.20989 -12.05655 -11.78145 -11.75679 -11.43459 -10.97503 -10.22823 -9.72105 -9.67922 -9.58843 -8.87974 -6.75617 -0.09141 0.26478 0.37499 0.98216 1.39276 1.57180 1.78409 1.88777 2.09922 2.19890 2.53055 2.88015 3.29130 3.46058 3.46841 3.86248 3.88061 4.02999 4.17430 4.26306 4.40511 4.49268 4.70112 4.76277 4.82744 4.84365 4.93142 5.13116 5.15355 5.20028 5.29260 5.31315 5.36718 5.51158 5.62021 5.64885 5.82360 5.96666 6.10027 6.12997 6.32881 6.51949 6.80155 7.70806 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.021395 B = 0.004693 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.375688 B = 5965.022181 C = 7096.543081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.147 4.147 3 C -0.080 4.080 4 C -0.145 4.145 5 C 0.014 3.986 6 C -0.190 4.190 7 C -0.022 4.022 8 C -0.249 4.249 9 C 0.126 3.874 10 C -0.502 4.502 11 H 0.049 0.951 12 C 0.015 3.985 13 N -0.803 5.803 14 Si 1.097 2.903 15 H -0.238 1.238 16 H -0.250 1.250 17 H -0.281 1.281 18 C -0.192 4.192 19 C 0.301 3.699 20 N -0.521 5.521 21 C 0.013 3.987 22 C -0.174 4.174 23 C 0.086 3.914 24 F -0.148 7.148 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.158 0.842 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.124 0.876 32 H 0.285 0.715 33 H 0.137 0.863 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.372 -2.450 -1.035 19.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.148 4.148 3 C -0.098 4.098 4 C -0.163 4.163 5 C 0.014 3.986 6 C -0.191 4.191 7 C -0.040 4.040 8 C -0.267 4.267 9 C 0.120 3.880 10 C -0.530 4.530 11 H 0.067 0.933 12 C -0.204 4.204 13 N -0.423 5.423 14 Si 0.915 3.085 15 H -0.163 1.163 16 H -0.174 1.174 17 H -0.208 1.208 18 C -0.198 4.198 19 C -0.008 4.008 20 N -0.200 5.200 21 C -0.007 4.007 22 C -0.193 4.193 23 C 0.067 3.933 24 F -0.126 7.126 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.082 0.918 28 H 0.176 0.824 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.141 0.859 32 H 0.096 0.904 33 H 0.155 0.845 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -18.182 -2.293 -1.857 18.420 hybrid contribution 0.732 1.057 1.335 1.854 sum -17.450 -1.237 -0.522 17.502 Atomic orbital electron populations 1.20725 0.88790 1.03758 1.03210 1.20211 0.98107 0.91600 1.04921 1.21090 0.93429 0.97744 0.97534 1.21513 0.94648 0.97838 1.02338 1.18578 0.91487 0.92773 0.95787 1.18024 0.91052 0.92582 1.17487 1.20864 0.93337 0.97742 0.92077 1.20890 0.94700 0.96714 1.14446 1.18756 0.92341 0.90603 0.86290 1.20825 0.93082 1.06732 1.32330 0.93303 1.28761 0.95944 0.98100 0.97583 1.70512 1.11430 1.33171 1.27178 0.83380 0.75041 0.75611 0.74486 1.16269 1.17409 1.20755 1.16976 0.92217 0.85566 1.25031 1.25959 0.91721 0.92222 0.90907 1.81031 1.09947 1.13670 1.15377 1.20973 0.90512 0.98049 0.91188 1.21252 0.92222 0.99635 1.06149 1.17590 0.89843 0.81253 1.04627 1.91434 1.80215 1.46820 1.94181 0.90337 0.89312 0.91846 0.82414 0.84278 0.84415 0.85850 0.90392 0.84516 0.84186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.66 9.83 71.23 0.70 -0.96 16 2 C -0.15 -3.13 5.89 -19.75 -0.12 -3.24 16 3 C -0.08 -1.58 9.68 22.23 0.22 -1.36 16 4 C -0.15 -3.43 9.41 22.53 0.21 -3.22 16 5 C 0.01 0.39 5.88 -20.04 -0.12 0.27 16 6 C -0.19 -6.20 5.88 -19.99 -0.12 -6.32 16 7 C -0.02 -0.72 9.30 22.17 0.21 -0.52 16 8 C -0.25 -9.71 7.21 22.44 0.16 -9.55 16 9 C 0.13 5.66 5.30 -19.86 -0.11 5.55 16 10 C -0.50 -25.28 8.90 23.31 0.21 -25.07 16 11 H 0.05 2.73 7.61 -2.91 -0.02 2.70 16 12 C 0.02 0.72 5.42 85.38 0.46 1.18 16 13 N -0.80 -40.29 13.64 21.89 0.30 -39.99 16 14 Si 1.10 41.69 24.90 68.60 1.71 43.39 16 15 H -0.24 -7.86 6.44 99.48 0.64 -7.22 16 16 H -0.25 -9.25 7.02 99.48 0.70 -8.56 16 17 H -0.28 -10.49 7.11 99.48 0.71 -9.78 16 18 C -0.19 -8.11 5.93 -19.63 -0.12 -8.23 16 19 C 0.30 13.66 14.34 88.33 1.27 14.93 16 20 N -0.52 -24.71 18.54 19.00 0.35 -24.36 16 21 C 0.01 0.46 9.12 22.75 0.21 0.67 16 22 C -0.17 -4.62 9.39 22.57 0.21 -4.40 16 23 C 0.09 2.16 7.23 22.34 0.16 2.32 16 24 F -0.15 -3.78 16.46 44.97 0.74 -3.04 16 25 H 0.08 1.06 8.14 -2.38 -0.02 1.05 16 26 H 0.09 0.99 8.08 -2.39 -0.02 0.97 16 27 H 0.06 1.01 7.63 -2.39 -0.02 0.99 16 28 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 29 H 0.14 2.90 6.15 -2.91 -0.02 2.89 16 30 H 0.14 3.70 6.09 -2.91 -0.02 3.69 16 31 H 0.12 4.62 4.38 -2.91 -0.01 4.61 16 32 H 0.28 14.34 8.72 -92.70 -0.81 13.53 16 33 H 0.14 3.93 6.13 -2.91 -0.02 3.91 16 34 H 0.14 3.42 6.13 -2.91 -0.02 3.40 16 Total: -1.00 -55.30 299.97 7.59 -47.71 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 1.05 Total: 14.24 kcal Atomic # 6 Polarization: -41.39 SS G_CDS: 3.44 Total: -37.95 kcal Atomic # 7 Polarization: -65.00 SS G_CDS: 0.65 Total: -64.35 kcal Atomic # 9 Polarization: -3.78 SS G_CDS: 0.74 Total: -3.04 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 1.71 Total: 43.39 kcal Total: -55.30 7.59 -47.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239821066.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.449 kcal (2) G-P(sol) polarization free energy of solvation -55.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds