Wall clock time and date at job start Tue Mar 31 2020 05:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38369 * 119.91440 * 2 1 4 4 C 1.38257 * 120.28104 * 179.97438 * 3 2 1 5 5 C 1.38274 * 120.10069 * 0.02562 * 4 3 2 6 6 F 1.35099 * 120.09019 * 179.97438 * 5 4 3 7 7 C 1.39582 * 119.81997 * 359.97438 * 5 4 3 8 8 C 1.48279 * 120.14357 * 180.02562 * 7 5 4 9 9 C 1.39830 * 119.54121 * 129.99587 * 8 7 5 10 10 C 1.37702 * 121.17367 * 179.97438 * 9 8 7 11 11 C 1.39590 * 120.18264 * 0.27902 * 10 9 8 12 12 C 1.43204 * 120.45170 * 179.72316 * 11 10 9 13 13 N 9.00301 * 127.33319 * 179.09755 * 2 1 3 14 14 C 1.46538 * 119.09237 * 359.46599 * 11 10 9 15 15 C 1.40846 * 120.55686 * 180.26409 * 14 11 10 16 16 H 1.08002 * 119.99483 * 330.40379 * 15 14 11 17 17 C 1.40230 * 119.99920 * 150.38918 * 15 14 11 18 18 N 1.30669 * 119.99694 * 161.89543 * 17 15 14 19 19 Si 1.86793 * 120.00443 * 341.90365 * 17 15 14 20 20 H 1.48504 * 109.47468 * 95.38490 * 19 17 15 21 21 H 1.48508 * 109.47193 * 215.38781 * 19 17 15 22 22 H 1.48498 * 109.47015 * 335.38609 * 19 17 15 23 23 C 1.38624 * 119.53311 * 309.98038 * 8 7 5 24 24 C 1.37985 * 119.90696 * 180.26102 * 2 1 3 25 25 H 1.08997 * 109.47570 * 89.99651 * 1 2 3 26 26 H 1.09003 * 109.47546 * 210.00008 * 1 2 3 27 27 H 1.09004 * 109.46903 * 329.99881 * 1 2 3 28 28 H 1.07999 * 119.85589 * 359.96105 * 3 2 1 29 29 H 1.08001 * 119.94565 * 179.97438 * 4 3 2 30 30 H 1.08008 * 119.41427 * 359.96141 * 9 8 7 31 31 H 1.07996 * 119.90976 * 180.02562 * 10 9 8 32 32 H 0.96995 * 119.99849 * 180.02562 * 18 17 15 33 33 H 1.07994 * 120.13806 * 0.04311 * 23 8 7 34 34 H 1.08001 * 120.05297 * 0.04143 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1993 0.0000 4 6 3.5795 1.2082 0.0005 5 6 4.2807 0.0164 0.0005 6 9 5.6316 0.0253 0.0005 7 6 3.5888 -1.1959 0.0005 8 6 4.3334 -2.4782 0.0011 9 6 4.0031 -3.4668 0.9332 10 6 4.6722 -4.6700 0.9634 11 6 5.7049 -4.9217 0.0586 12 6 6.4085 -6.1686 0.0888 13 7 6.9668 -7.1576 0.1127 14 6 6.0554 -3.8947 -0.9262 15 6 7.0884 -4.1183 -1.8572 16 1 7.9164 -4.7625 -1.6006 17 6 7.0416 -3.5047 -3.1172 18 7 8.1268 -3.4111 -3.8390 19 14 5.4280 -2.8208 -3.7638 20 1 5.3465 -1.3702 -3.4565 21 1 5.3596 -3.0201 -5.2339 22 1 4.2951 -3.5286 -3.1151 23 6 5.3471 -2.6801 -0.9227 24 6 2.1949 -1.1961 -0.0054 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6533 2.1325 -0.0006 29 1 4.1127 2.1474 0.0001 30 1 3.2092 -3.2834 1.6422 31 1 4.3999 -5.4194 1.6918 32 1 8.0945 -2.9864 -4.7104 33 1 5.5919 -1.9077 -1.6366 34 1 1.6543 -2.1310 -0.0104 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239963584.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:24 Heat of formation + Delta-G solvation = -2.938263 kcal Electronic energy + Delta-G solvation = -20542.178482 eV Core-core repulsion = 17317.825290 eV Total energy + Delta-G solvation = -3224.353191 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.79767 -40.44979 -39.27629 -37.10616 -35.87141 -33.90254 -32.93802 -32.43590 -30.24593 -27.65660 -27.20880 -24.91417 -23.67337 -22.70972 -21.60703 -19.55419 -19.25038 -18.47327 -17.47654 -17.11902 -16.61993 -16.32866 -15.94069 -15.46390 -15.16253 -14.90724 -14.80458 -14.54539 -14.36919 -14.26225 -14.07601 -13.84992 -13.54007 -13.34965 -12.96158 -12.84456 -12.77240 -12.67196 -12.49753 -12.11242 -12.01124 -11.77666 -11.61678 -11.13006 -10.17098 -9.68520 -9.52128 -9.13114 -9.04645 -6.72142 -0.22615 0.27349 0.50360 0.77803 1.19710 1.31137 1.41596 1.94460 1.99824 2.16778 2.53452 2.68062 3.35392 3.44023 3.46017 3.67398 3.90253 4.01059 4.15326 4.33934 4.38781 4.58002 4.64402 4.73141 4.84802 4.97318 4.99013 5.06602 5.10815 5.20477 5.26092 5.37426 5.39205 5.56386 5.63475 5.67217 5.83867 5.97250 6.01780 6.14908 6.44451 6.54952 6.85552 7.93982 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.016267 B = 0.006526 C = 0.005456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.866927 B = 4289.220893 C = 5130.534825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.094 4.094 3 C -0.089 4.089 4 C -0.152 4.152 5 C 0.066 3.934 6 F -0.154 7.154 7 C -0.093 4.093 8 C 0.011 3.989 9 C -0.212 4.212 10 C -0.009 4.009 11 C -0.183 4.183 12 C 0.302 3.698 13 N -0.520 5.520 14 C 0.119 3.881 15 C -0.458 4.458 16 H 0.056 0.944 17 C 0.052 3.948 18 N -0.819 5.819 19 Si 0.957 3.043 20 H -0.258 1.258 21 H -0.268 1.268 22 H -0.238 1.238 23 C -0.225 4.225 24 C -0.084 4.084 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.167 0.833 29 H 0.152 0.848 30 H 0.146 0.854 31 H 0.144 0.856 32 H 0.303 0.697 33 H 0.100 0.900 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.496 12.945 5.256 23.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.094 4.094 3 C -0.106 4.106 4 C -0.171 4.171 5 C 0.046 3.954 6 F -0.133 7.133 7 C -0.094 4.094 8 C 0.010 3.990 9 C -0.231 4.231 10 C -0.029 4.029 11 C -0.189 4.189 12 C -0.007 4.007 13 N -0.199 5.199 14 C 0.113 3.887 15 C -0.486 4.486 16 H 0.074 0.926 17 C -0.167 4.167 18 N -0.442 5.442 19 Si 0.779 3.221 20 H -0.183 1.183 21 H -0.193 1.193 22 H -0.161 1.161 23 C -0.244 4.244 24 C -0.102 4.102 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.105 0.895 28 H 0.185 0.815 29 H 0.169 0.831 30 H 0.164 0.836 31 H 0.162 0.838 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -17.363 11.442 5.064 21.402 hybrid contribution 0.985 0.288 -0.698 1.242 sum -16.378 11.730 4.366 20.612 Atomic orbital electron populations 1.20847 0.87971 1.04341 1.03447 1.20307 0.98266 0.92021 0.98809 1.21331 0.92113 0.99440 0.97738 1.21343 0.95994 0.96327 1.03441 1.18281 0.76639 0.95245 1.05187 1.91475 1.30307 1.97439 1.94059 1.19193 0.94950 0.90975 1.04246 1.18650 0.93131 0.92662 0.94519 1.20611 1.05699 0.93588 1.03221 1.20897 0.90859 0.96812 0.94333 1.17198 1.04412 0.88730 1.08568 1.25945 0.91578 0.92377 0.90807 1.81014 1.12162 1.14142 1.12612 1.18496 0.89830 0.89819 0.90518 1.19520 1.05465 1.24697 0.98917 0.92591 1.26995 1.01208 0.92169 0.96339 1.69618 1.30851 1.31416 1.12336 0.85591 0.79070 0.79864 0.77603 1.18349 1.19347 1.16080 1.20965 1.02492 0.96815 1.04157 1.21268 0.90633 0.99957 0.98333 0.90162 0.90486 0.89501 0.81529 0.83057 0.83592 0.83836 0.88632 0.88268 0.83367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 71.23 0.71 -0.46 16 2 C -0.09 -1.72 5.87 -19.89 -0.12 -1.84 16 3 C -0.09 -1.56 9.69 22.31 0.22 -1.34 16 4 C -0.15 -3.59 10.02 22.28 0.22 -3.37 16 5 C 0.07 2.13 7.13 22.60 0.16 2.29 16 6 F -0.15 -5.97 15.85 44.97 0.71 -5.26 16 7 C -0.09 -2.99 5.45 -20.00 -0.11 -3.10 16 8 C 0.01 0.43 5.32 -20.13 -0.11 0.32 16 9 C -0.21 -7.06 9.42 22.53 0.21 -6.85 16 10 C -0.01 -0.31 9.74 22.47 0.22 -0.09 16 11 C -0.18 -8.24 5.95 -19.54 -0.12 -8.36 16 12 C 0.30 14.43 14.35 88.33 1.27 15.70 16 13 N -0.52 -25.83 18.54 19.00 0.35 -25.48 16 14 C 0.12 5.89 5.26 -19.90 -0.10 5.79 16 15 C -0.46 -25.48 9.03 23.39 0.21 -25.27 16 16 H 0.06 3.46 7.64 -2.91 -0.02 3.44 16 17 C 0.05 2.75 5.41 85.35 0.46 3.21 16 18 N -0.82 -43.93 13.92 21.87 0.30 -43.63 16 19 Si 0.96 41.19 24.53 68.60 1.68 42.88 16 20 H -0.26 -10.77 6.72 99.48 0.67 -10.10 16 21 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 22 H -0.24 -10.14 6.86 99.48 0.68 -9.46 16 23 C -0.23 -10.22 5.95 22.94 0.14 -10.08 16 24 C -0.08 -2.03 9.12 22.49 0.21 -1.82 16 25 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 27 H 0.09 0.61 8.08 -2.38 -0.02 0.59 16 28 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 29 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 30 H 0.15 3.74 8.01 -2.91 -0.02 3.71 16 31 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 32 H 0.30 14.37 8.29 -92.71 -0.77 13.60 16 33 H 0.10 4.69 4.42 -2.91 -0.01 4.67 16 34 H 0.15 3.06 8.04 -2.91 -0.02 3.04 16 Total: -1.00 -64.78 306.11 7.60 -57.17 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 1.08 Total: 9.58 kcal Atomic # 6 Polarization: -38.73 SS G_CDS: 3.47 Total: -35.26 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: 0.66 Total: -69.11 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.71 Total: -5.26 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 1.68 Total: 42.88 kcal Total: -64.78 7.60 -57.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239963584.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.236 kcal (2) G-P(sol) polarization free energy of solvation -64.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds