Wall clock time and date at job start Tue Mar 31 2020 05:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38449 * 119.89345 * 2 1 4 4 C 1.38300 * 120.32155 * 180.02562 * 3 2 1 5 5 C 1.38231 * 120.10937 * 0.02562 * 4 3 2 6 6 F 1.35109 * 120.09183 * 179.97438 * 5 4 3 7 7 C 1.39803 * 119.80002 * 0.02562 * 5 4 3 8 8 C 1.47973 * 120.15739 * 179.97438 * 7 5 4 9 9 C 1.39996 * 119.50064 * 129.97721 * 8 7 5 10 10 C 1.35997 * 121.18881 * 180.02562 * 9 8 7 11 11 C 1.41046 * 120.11118 * 359.97438 * 10 9 8 12 12 C 1.40437 * 120.48633 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00473 * 150.01450 * 12 11 10 14 14 C 1.40296 * 119.99960 * 330.01080 * 12 11 10 15 15 N 1.30639 * 119.99995 * 161.92418 * 14 12 11 16 16 Si 1.86803 * 119.99975 * 341.92514 * 14 12 11 17 17 H 1.48502 * 109.46737 * 95.39413 * 16 14 12 18 18 H 1.48499 * 109.47115 * 215.39087 * 16 14 12 19 19 H 1.48502 * 109.47138 * 335.39925 * 16 14 12 20 20 C 1.46643 * 119.02855 * 359.77546 * 11 10 9 21 21 C 1.43196 * 120.56961 * 180.27371 * 20 11 10 22 22 N 8.15959 * 141.89555 * 211.72243 * 2 1 3 23 23 C 1.39081 * 118.86523 * 0.49052 * 20 11 10 24 24 C 1.37892 * 119.90394 * 180.26280 * 2 1 3 25 25 H 1.08997 * 109.46862 * 90.00171 * 1 2 3 26 26 H 1.09009 * 109.46599 * 209.99844 * 1 2 3 27 27 H 1.08996 * 109.47097 * 329.99361 * 1 2 3 28 28 H 1.08001 * 119.84014 * 359.97438 * 3 2 1 29 29 H 1.07992 * 119.93758 * 179.97438 * 4 3 2 30 30 H 1.07997 * 119.40788 * 359.97438 * 9 8 7 31 31 H 1.08005 * 119.94119 * 180.02562 * 10 9 8 32 32 H 0.97003 * 119.99919 * 180.02562 * 15 14 12 33 33 H 1.08007 * 120.09422 * 179.76614 * 23 20 11 34 34 H 1.08005 * 120.06055 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.2003 0.0000 4 6 3.5800 1.2106 -0.0005 5 6 4.2823 0.0200 -0.0016 6 9 5.6334 0.0306 -0.0027 7 6 3.5905 -1.1948 -0.0027 8 6 4.3344 -2.4739 -0.0044 9 6 4.0046 -3.4645 0.9283 10 6 4.6661 -4.6524 0.9578 11 6 5.7051 -4.9066 0.0385 12 6 6.3931 -6.1307 0.0615 13 1 6.8068 -6.5350 -0.8506 14 6 6.5430 -6.8285 1.2693 15 7 6.8540 -8.0973 1.2565 16 14 6.2980 -5.9434 2.8960 17 1 4.9056 -6.1520 3.3682 18 1 7.2479 -6.4837 3.9015 19 1 6.5457 -4.4908 2.7113 20 6 6.0528 -3.8762 -0.9453 21 6 7.0982 -4.1018 -1.8977 22 7 7.9277 -4.2830 -2.6476 23 6 5.3531 -2.6743 -0.9346 24 6 2.1945 -1.1953 -0.0055 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 1.6527 2.1331 -0.0004 29 1 4.1119 2.1505 -0.0009 30 1 3.2111 -3.2817 1.6378 31 1 4.3947 -5.4026 1.6858 32 1 6.9573 -8.5798 2.0916 33 1 5.5953 -1.9002 -1.6478 34 1 1.6539 -2.1303 -0.0102 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239964080.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:03 Heat of formation + Delta-G solvation = 8.679808 kcal Electronic energy + Delta-G solvation = -20249.137870 eV Core-core repulsion = 17025.288476 eV Total energy + Delta-G solvation = -3223.849394 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.43021 -39.12546 -37.80552 -35.32913 -34.31104 -32.55549 -31.77792 -30.36289 -29.49883 -26.54486 -25.64671 -22.73387 -22.52575 -21.52380 -20.51208 -17.86231 -17.60355 -16.97488 -16.13240 -15.62387 -15.21151 -14.92368 -14.35546 -14.10254 -13.87907 -13.68378 -13.58916 -13.16141 -13.02790 -12.83227 -12.65488 -12.06915 -12.04088 -11.95089 -11.74209 -11.59060 -11.36304 -11.13934 -11.06512 -10.87063 -10.41242 -10.20142 -9.96725 -9.52670 -8.83419 -8.34270 -8.02507 -7.60367 -7.42509 -4.91075 1.28182 1.40506 1.93775 2.40140 2.87316 2.99091 3.09384 3.65262 3.72519 3.81836 4.00424 4.33505 4.58112 4.86691 4.92236 5.05932 5.16280 5.27287 5.29595 5.45226 5.56196 5.69316 5.72240 5.82239 5.89718 6.13078 6.25651 6.29883 6.37967 6.45300 6.54564 6.65326 6.75176 6.99030 7.05872 7.28128 7.34025 7.50751 7.65279 7.86733 8.18752 8.28285 8.69008 9.55297 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.019378 B = 0.005239 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.622070 B = 5342.784376 C = 6029.023717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.097 4.097 3 C -0.117 4.117 4 C -0.149 4.149 5 C 0.082 3.918 6 F -0.136 7.136 7 C -0.018 4.018 8 C -0.217 4.217 9 C -0.022 4.022 10 C -0.237 4.237 11 C 0.129 3.871 12 C -0.400 4.400 13 H 0.099 0.901 14 C 0.081 3.919 15 N -0.766 5.766 16 Si 0.916 3.084 17 H -0.261 1.261 18 H -0.283 1.283 19 H -0.235 1.235 20 C -0.170 4.170 21 C 0.297 3.703 22 N -0.494 5.494 23 C 0.017 3.983 24 C -0.098 4.098 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.296 0.704 33 H 0.104 0.896 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.253 11.940 3.584 16.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.097 4.097 3 C -0.135 4.135 4 C -0.168 4.168 5 C 0.063 3.937 6 F -0.115 7.115 7 C -0.019 4.019 8 C -0.218 4.218 9 C -0.041 4.041 10 C -0.256 4.256 11 C 0.123 3.877 12 C -0.426 4.426 13 H 0.117 0.883 14 C -0.145 4.145 15 N -0.386 5.386 16 Si 0.740 3.260 17 H -0.187 1.187 18 H -0.210 1.210 19 H -0.157 1.157 20 C -0.176 4.176 21 C -0.013 4.013 22 N -0.172 5.172 23 C -0.004 4.004 24 C -0.116 4.116 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.141 0.859 29 H 0.146 0.854 30 H 0.119 0.881 31 H 0.129 0.871 32 H 0.108 0.892 33 H 0.122 0.878 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.811 11.348 2.493 15.207 hybrid contribution -0.079 0.172 0.990 1.008 sum -9.890 11.520 3.483 15.577 Atomic orbital electron populations 1.20750 0.91209 1.02581 1.02183 1.19838 0.96062 0.93008 1.00835 1.20743 0.92952 0.97560 1.02243 1.20974 0.94857 0.96747 1.04191 1.17900 0.77087 0.93928 1.04831 1.91491 1.28816 1.97300 1.93883 1.18937 0.93019 0.91745 0.98217 1.17551 1.04697 0.94545 1.05000 1.20342 0.96653 0.92042 0.95092 1.20596 1.01209 0.98639 1.05137 1.18490 0.89932 0.90230 0.89064 1.19751 1.26142 0.99841 0.96846 0.88265 1.26498 0.91118 0.94201 1.02685 1.69584 1.28380 1.08558 1.32052 0.86209 0.78734 0.82674 0.78380 1.18701 1.21026 1.15727 1.16664 1.00899 0.96746 1.03286 1.25488 0.92216 0.91810 0.91828 1.80906 1.13009 1.09850 1.13471 1.20623 0.91260 0.93818 0.94654 1.21084 0.92402 0.97764 1.00388 0.91329 0.91509 0.91804 0.85895 0.85420 0.88057 0.87149 0.89241 0.87756 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.00 36.01 0.36 -0.59 16 2 C -0.10 -1.15 5.87 -104.67 -0.61 -1.76 16 3 C -0.12 -1.34 9.69 -39.48 -0.38 -1.72 16 4 C -0.15 -1.94 10.01 -39.56 -0.40 -2.34 16 5 C 0.08 1.31 7.14 -39.00 -0.28 1.04 16 6 F -0.14 -2.42 15.86 2.25 0.04 -2.38 16 7 C -0.02 -0.30 5.45 -104.82 -0.57 -0.87 16 8 C -0.22 -4.10 5.34 -104.82 -0.56 -4.66 16 9 C -0.02 -0.42 9.34 -39.73 -0.37 -0.79 16 10 C -0.24 -4.96 7.10 -39.32 -0.28 -5.23 16 11 C 0.13 2.97 5.26 -104.61 -0.55 2.42 16 12 C -0.40 -9.92 9.01 -37.98 -0.34 -10.26 16 13 H 0.10 2.68 7.64 -52.49 -0.40 2.28 16 14 C 0.08 1.89 5.41 -17.29 -0.09 1.80 16 15 N -0.77 -18.30 13.92 55.57 0.77 -17.52 16 16 Si 0.92 18.37 24.52 -169.99 -4.17 14.20 16 17 H -0.26 -4.92 6.71 56.52 0.38 -4.54 16 18 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 19 H -0.23 -4.87 6.86 56.52 0.39 -4.49 16 20 C -0.17 -3.82 5.93 -104.27 -0.62 -4.44 16 21 C 0.30 6.97 14.35 -22.58 -0.32 6.65 16 22 N -0.49 -12.00 18.52 41.72 0.77 -11.23 16 23 C 0.02 0.35 8.54 -38.84 -0.33 0.02 16 24 C -0.10 -1.37 9.12 -39.20 -0.36 -1.72 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.54 8.08 -51.92 -0.42 0.12 16 27 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 28 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.10 1.64 8.00 -52.49 -0.42 1.22 16 31 H 0.11 2.23 4.75 -52.48 -0.25 1.98 16 32 H 0.30 6.27 8.29 -40.82 -0.34 5.93 16 33 H 0.10 1.99 7.73 -52.48 -0.41 1.58 16 34 H 0.13 1.66 8.03 -52.48 -0.42 1.24 16 LS Contribution 305.97 15.07 4.61 4.61 Total: -1.00 -25.95 305.97 -6.86 -32.82 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -3.18 Total: 1.98 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -5.71 Total: -22.47 kcal Atomic # 7 Polarization: -30.30 SS G_CDS: 1.55 Total: -28.75 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.38 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -4.17 Total: 14.20 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -25.95 -6.86 -32.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239964080.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.496 kcal (2) G-P(sol) polarization free energy of solvation -25.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds