Wall clock time and date at job start Tue Mar 31 2020 05:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38449 * 119.89345 * 2 1 4 4 C 1.38300 * 120.32155 * 180.02562 * 3 2 1 5 5 C 1.38231 * 120.10937 * 0.02562 * 4 3 2 6 6 F 1.35109 * 120.09183 * 179.97438 * 5 4 3 7 7 C 1.39803 * 119.80002 * 0.02562 * 5 4 3 8 8 C 1.47973 * 120.15739 * 179.97438 * 7 5 4 9 9 C 1.39996 * 119.50064 * 129.97721 * 8 7 5 10 10 C 1.35997 * 121.18881 * 180.02562 * 9 8 7 11 11 C 1.41046 * 120.11118 * 359.97438 * 10 9 8 12 12 C 1.40437 * 120.48633 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00473 * 150.01450 * 12 11 10 14 14 C 1.40296 * 119.99960 * 330.01080 * 12 11 10 15 15 N 1.30639 * 119.99995 * 161.92418 * 14 12 11 16 16 Si 1.86803 * 119.99975 * 341.92514 * 14 12 11 17 17 H 1.48502 * 109.46737 * 95.39413 * 16 14 12 18 18 H 1.48499 * 109.47115 * 215.39087 * 16 14 12 19 19 H 1.48502 * 109.47138 * 335.39925 * 16 14 12 20 20 C 1.46643 * 119.02855 * 359.77546 * 11 10 9 21 21 C 1.43196 * 120.56961 * 180.27371 * 20 11 10 22 22 N 8.15959 * 141.89555 * 211.72243 * 2 1 3 23 23 C 1.39081 * 118.86523 * 0.49052 * 20 11 10 24 24 C 1.37892 * 119.90394 * 180.26280 * 2 1 3 25 25 H 1.08997 * 109.46862 * 90.00171 * 1 2 3 26 26 H 1.09009 * 109.46599 * 209.99844 * 1 2 3 27 27 H 1.08996 * 109.47097 * 329.99361 * 1 2 3 28 28 H 1.08001 * 119.84014 * 359.97438 * 3 2 1 29 29 H 1.07992 * 119.93758 * 179.97438 * 4 3 2 30 30 H 1.07997 * 119.40788 * 359.97438 * 9 8 7 31 31 H 1.08005 * 119.94119 * 180.02562 * 10 9 8 32 32 H 0.97003 * 119.99919 * 180.02562 * 15 14 12 33 33 H 1.08007 * 120.09422 * 179.76614 * 23 20 11 34 34 H 1.08005 * 120.06055 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.2003 0.0000 4 6 3.5800 1.2106 -0.0005 5 6 4.2823 0.0200 -0.0016 6 9 5.6334 0.0306 -0.0027 7 6 3.5905 -1.1948 -0.0027 8 6 4.3344 -2.4739 -0.0044 9 6 4.0046 -3.4645 0.9283 10 6 4.6661 -4.6524 0.9578 11 6 5.7051 -4.9066 0.0385 12 6 6.3931 -6.1307 0.0615 13 1 6.8068 -6.5350 -0.8506 14 6 6.5430 -6.8285 1.2693 15 7 6.8540 -8.0973 1.2565 16 14 6.2980 -5.9434 2.8960 17 1 4.9056 -6.1520 3.3682 18 1 7.2479 -6.4837 3.9015 19 1 6.5457 -4.4908 2.7113 20 6 6.0528 -3.8762 -0.9453 21 6 7.0982 -4.1018 -1.8977 22 7 7.9277 -4.2830 -2.6476 23 6 5.3531 -2.6743 -0.9346 24 6 2.1945 -1.1953 -0.0055 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 1.6527 2.1331 -0.0004 29 1 4.1119 2.1505 -0.0009 30 1 3.2111 -3.2817 1.6378 31 1 4.3947 -5.4026 1.6858 32 1 6.9573 -8.5798 2.0916 33 1 5.5953 -1.9002 -1.6478 34 1 1.6539 -2.1303 -0.0102 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239964080.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:03 Heat of formation + Delta-G solvation = -2.787439 kcal Electronic energy + Delta-G solvation = -20249.635127 eV Core-core repulsion = 17025.288476 eV Total energy + Delta-G solvation = -3224.346651 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.69330 -40.36150 -39.28435 -37.18779 -35.96985 -33.84778 -32.87316 -32.03127 -30.91734 -27.58840 -27.04265 -24.26215 -23.88029 -22.95726 -21.78230 -19.61575 -19.05503 -18.20334 -17.39895 -17.16967 -16.51177 -16.21124 -15.99867 -15.59424 -15.15708 -14.82057 -14.77925 -14.61137 -14.32582 -14.20435 -14.08168 -13.80965 -13.67183 -13.42892 -13.01456 -12.77642 -12.66338 -12.55532 -12.34520 -12.24430 -11.91032 -11.74408 -11.58182 -11.11525 -10.08352 -9.68317 -9.47962 -9.14641 -9.06577 -6.70876 0.06732 0.27069 0.37075 0.84623 1.26190 1.40984 1.50371 1.92539 2.04002 2.20854 2.51805 2.77245 3.36659 3.42468 3.51305 3.89735 3.98715 4.07602 4.09930 4.40235 4.41717 4.48962 4.64416 4.79711 4.81032 4.97841 5.06356 5.07535 5.11516 5.26219 5.32888 5.41410 5.46390 5.54965 5.64947 5.72752 5.85578 5.94566 6.11703 6.12685 6.43320 6.52438 6.81739 7.90860 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.019378 B = 0.005239 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.622070 B = 5342.784376 C = 6029.023717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.092 4.092 3 C -0.102 4.102 4 C -0.148 4.148 5 C 0.056 3.944 6 F -0.155 7.155 7 C -0.051 4.051 8 C -0.192 4.192 9 C -0.016 4.016 10 C -0.241 4.241 11 C 0.123 3.877 12 C -0.445 4.445 13 H 0.055 0.945 14 C 0.051 3.949 15 N -0.809 5.809 16 Si 0.965 3.035 17 H -0.233 1.233 18 H -0.274 1.274 19 H -0.247 1.247 20 C -0.191 4.191 21 C 0.301 3.699 22 N -0.520 5.520 23 C 0.010 3.990 24 C -0.099 4.099 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.160 0.840 29 H 0.148 0.852 30 H 0.140 0.860 31 H 0.121 0.879 32 H 0.307 0.693 33 H 0.112 0.888 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.912 15.249 5.334 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.092 4.092 3 C -0.120 4.120 4 C -0.167 4.167 5 C 0.037 3.963 6 F -0.134 7.134 7 C -0.052 4.052 8 C -0.194 4.194 9 C -0.035 4.035 10 C -0.260 4.260 11 C 0.118 3.882 12 C -0.471 4.471 13 H 0.073 0.927 14 C -0.170 4.170 15 N -0.431 5.431 16 Si 0.785 3.215 17 H -0.157 1.157 18 H -0.200 1.200 19 H -0.171 1.171 20 C -0.196 4.196 21 C -0.008 4.008 22 N -0.199 5.199 23 C -0.011 4.011 24 C -0.117 4.117 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.178 0.822 29 H 0.166 0.834 30 H 0.157 0.843 31 H 0.139 0.861 32 H 0.118 0.882 33 H 0.130 0.870 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.484 14.655 4.231 20.359 hybrid contribution 0.836 -0.515 0.348 1.042 sum -12.648 14.140 4.580 19.516 Atomic orbital electron populations 1.20836 0.88538 1.04022 1.03286 1.20246 0.97939 0.92242 0.98772 1.21242 0.92338 0.99081 0.99342 1.21276 0.95748 0.96434 1.03206 1.18249 0.76527 0.95068 1.06456 1.91445 1.30263 1.97430 1.94248 1.18893 0.94137 0.90516 1.01610 1.17956 1.02934 0.95584 1.02899 1.20737 0.96742 0.90893 0.95124 1.20752 1.00555 0.99874 1.04832 1.18639 0.90183 0.89618 0.89802 1.19583 1.29410 1.01864 0.96278 0.92681 1.27159 0.90428 0.94542 1.04875 1.69596 1.30466 1.09664 1.33372 0.85505 0.80409 0.80605 0.75021 1.15681 1.19983 1.17053 1.16906 1.01427 0.97785 1.03523 1.25841 0.92192 0.91136 0.91677 1.80865 1.13873 1.10667 1.14499 1.20779 0.91765 0.93036 0.95483 1.21255 0.91215 0.99376 0.99820 0.90250 0.90825 0.89775 0.82198 0.83393 0.84261 0.86124 0.88199 0.86997 0.84163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.00 71.24 0.71 -0.57 16 2 C -0.09 -1.70 5.87 -19.90 -0.12 -1.82 16 3 C -0.10 -1.79 9.69 22.33 0.22 -1.57 16 4 C -0.15 -3.29 10.01 22.28 0.22 -3.07 16 5 C 0.06 1.67 7.14 22.65 0.16 1.84 16 6 F -0.16 -5.38 15.86 44.97 0.71 -4.66 16 7 C -0.05 -1.54 5.45 -19.99 -0.11 -1.65 16 8 C -0.19 -6.97 5.34 -19.99 -0.11 -7.08 16 9 C -0.02 -0.58 9.34 22.18 0.21 -0.37 16 10 C -0.24 -9.85 7.10 22.44 0.16 -9.69 16 11 C 0.12 5.86 5.26 -19.86 -0.10 5.76 16 12 C -0.44 -23.48 9.01 23.31 0.21 -23.27 16 13 H 0.05 3.28 7.64 -2.91 -0.02 3.26 16 14 C 0.05 2.49 5.41 85.37 0.46 2.95 16 15 N -0.81 -40.50 13.92 21.89 0.30 -40.19 16 16 Si 0.96 37.43 24.52 68.60 1.68 39.11 16 17 H -0.23 -7.92 6.71 99.48 0.67 -7.26 16 18 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 19 H -0.25 -9.99 6.86 99.48 0.68 -9.30 16 20 C -0.19 -8.85 5.93 -19.64 -0.12 -8.97 16 21 C 0.30 14.91 14.35 88.37 1.27 16.18 16 22 N -0.52 -26.62 18.52 18.96 0.35 -26.27 16 23 C 0.01 0.41 8.54 22.75 0.19 0.61 16 24 C -0.10 -2.36 9.12 22.52 0.21 -2.15 16 25 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 0.80 8.08 -2.38 -0.02 0.78 16 27 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 28 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 29 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 30 H 0.14 3.88 8.00 -2.91 -0.02 3.85 16 31 H 0.12 4.65 4.75 -2.91 -0.01 4.64 16 32 H 0.31 13.43 8.29 -92.71 -0.77 12.66 16 33 H 0.11 4.31 7.73 -2.91 -0.02 4.28 16 34 H 0.14 3.00 8.03 -2.91 -0.02 2.98 16 Total: -1.00 -60.24 305.97 7.60 -52.64 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 1.08 Total: 12.25 kcal Atomic # 6 Polarization: -36.34 SS G_CDS: 3.47 Total: -32.88 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: 0.66 Total: -66.46 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 0.71 Total: -4.66 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 1.68 Total: 39.11 kcal Total: -60.24 7.60 -52.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239964080.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.856 kcal (2) G-P(sol) polarization free energy of solvation -60.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds