Wall clock time and date at job start Tue Mar 31 2020 05:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36234 * 120.05526 * 2 1 4 4 C 1.39993 * 120.11428 * 179.97438 * 3 2 1 5 5 C 1.47852 * 119.88244 * 180.02562 * 4 3 2 6 6 C 1.39832 * 119.97006 * 180.02562 * 5 4 3 7 7 C 1.36499 * 120.19827 * 180.02562 * 6 5 4 8 8 C 1.39869 * 120.14805 * 0.02562 * 7 6 5 9 9 C 1.43210 * 120.02824 * 180.02562 * 8 7 6 10 10 N 8.96399 * 127.80742 * 0.03910 * 2 1 3 11 11 C 1.40080 * 119.94527 * 359.97438 * 8 7 6 12 12 F 1.35100 * 120.09801 * 179.97438 * 11 8 7 13 13 C 1.37936 * 119.80036 * 359.73464 * 11 8 7 14 14 C 1.40025 * 120.22676 * 0.03151 * 4 3 2 15 15 C 1.36204 * 120.11785 * 359.73051 * 14 4 3 16 16 C 1.40937 * 120.06166 * 179.97438 * 2 1 3 17 17 C 1.40979 * 120.11119 * 359.97438 * 16 2 1 18 18 H 1.08000 * 119.99846 * 334.48892 * 17 16 2 19 19 C 1.40066 * 120.00199 * 154.49412 * 17 16 2 20 20 N 1.30769 * 119.99707 * 334.60223 * 19 17 16 21 21 Si 1.86794 * 120.00231 * 154.60165 * 19 17 16 22 22 H 1.48507 * 109.47086 * 179.97438 * 21 19 17 23 23 H 1.48490 * 109.47317 * 300.00213 * 21 19 17 24 24 H 1.48504 * 109.46979 * 60.00085 * 21 19 17 25 25 H 1.09005 * 109.47019 * 270.01928 * 1 2 3 26 26 H 1.09001 * 109.47381 * 30.01968 * 1 2 3 27 27 H 1.08999 * 109.46956 * 150.02430 * 1 2 3 28 28 H 1.08001 * 119.94261 * 359.97438 * 3 2 1 29 29 H 1.07997 * 119.89801 * 359.97438 * 6 5 4 30 30 H 1.08002 * 119.92958 * 180.02562 * 7 6 5 31 31 H 1.07993 * 120.06869 * 180.27424 * 13 11 8 32 32 H 1.08003 * 119.93762 * 179.97438 * 14 4 3 33 33 H 1.07997 * 120.05825 * 180.28490 * 15 14 4 34 34 H 0.96992 * 119.99510 * 354.16816 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1893 1.1792 0.0000 4 6 3.5893 1.1806 0.0005 5 6 4.3246 2.4633 0.0011 6 6 5.7229 2.4669 0.0011 7 6 6.4065 3.6484 0.0022 8 6 5.7113 4.8621 0.0038 9 6 6.4311 6.1002 0.0043 10 7 7.0020 7.0822 0.0048 11 6 4.3105 4.8657 0.0038 12 9 3.6360 6.0362 0.0059 13 6 3.6220 3.6705 -0.0033 14 6 4.2954 -0.0285 0.0004 15 6 3.6228 -1.2129 0.0053 16 6 2.2130 -1.2198 0.0005 17 6 1.5118 -2.4428 0.0016 18 1 0.5111 -2.4911 0.4049 19 6 2.1130 -3.5953 -0.5201 20 7 3.0531 -3.4907 -1.4231 21 14 1.5719 -5.2816 0.0737 22 1 2.3562 -6.3290 -0.6286 23 1 1.8015 -5.3883 1.5369 24 1 0.1273 -5.4682 -0.2155 25 1 -0.3633 0.0003 1.0277 26 1 -0.3634 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5135 28 1 1.6493 2.1145 -0.0004 29 1 6.2636 1.5320 0.0011 30 1 7.4865 3.6461 0.0017 31 1 2.5421 3.6682 -0.0078 32 1 5.3755 -0.0220 0.0004 33 1 4.1684 -2.1449 0.0099 34 1 3.2755 -2.6222 -1.7932 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240154734.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:57 Heat of formation + Delta-G solvation = 5.535916 kcal Electronic energy + Delta-G solvation = -19871.437328 eV Core-core repulsion = 16647.451605 eV Total energy + Delta-G solvation = -3223.985723 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.89183 -39.34079 -38.00960 -36.30802 -34.45415 -32.50635 -31.36865 -30.35293 -29.00589 -26.54308 -25.53541 -23.26290 -22.71321 -20.82122 -19.93483 -19.03867 -18.15931 -16.74054 -16.29981 -15.63599 -15.53158 -14.70606 -14.53340 -14.14958 -13.92166 -13.59497 -13.53886 -13.21985 -13.04540 -12.75994 -12.66907 -12.34936 -12.16301 -12.07469 -11.71498 -11.41727 -11.35807 -11.21451 -10.89660 -10.73142 -10.61012 -9.86748 -9.73091 -9.43368 -8.98266 -8.71952 -7.95789 -7.64495 -7.39058 -4.76877 0.67464 1.40833 2.33539 2.66128 2.74165 2.92536 2.97313 3.14842 3.27873 3.71815 3.91227 4.00355 4.23473 4.33308 4.87558 5.13853 5.16331 5.35999 5.46122 5.72034 5.81580 5.99827 6.06167 6.11730 6.19273 6.32560 6.37373 6.40200 6.49353 6.69481 6.76927 6.84851 6.97949 7.05214 7.35612 7.40382 7.52258 7.58604 7.63405 7.78307 7.94100 8.33853 8.45663 9.59938 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.035519 B = 0.003624 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.131672 B = 7723.862113 C = 8402.213366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.201 4.201 3 C -0.041 4.041 4 C -0.233 4.233 5 C 0.092 3.908 6 C -0.165 4.165 7 C -0.026 4.026 8 C -0.130 4.130 9 C 0.269 3.731 10 N -0.440 5.440 11 C 0.164 3.836 12 F -0.137 7.137 13 C -0.195 4.195 14 C -0.046 4.046 15 C -0.226 4.226 16 C 0.105 3.895 17 C -0.474 4.474 18 H 0.088 0.912 19 C 0.033 3.967 20 N -0.765 5.765 21 Si 1.065 2.935 22 H -0.270 1.270 23 H -0.270 1.270 24 H -0.272 1.272 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.140 0.860 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.094 2.462 1.706 2.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.202 4.202 3 C -0.060 4.060 4 C -0.234 4.234 5 C 0.091 3.909 6 C -0.183 4.183 7 C -0.047 4.047 8 C -0.135 4.135 9 C -0.045 4.045 10 N -0.116 5.116 11 C 0.142 3.858 12 F -0.116 7.116 13 C -0.214 4.214 14 C -0.065 4.065 15 C -0.245 4.245 16 C 0.101 3.899 17 C -0.500 4.500 18 H 0.106 0.894 19 C -0.192 4.192 20 N -0.386 5.386 21 Si 0.887 3.113 22 H -0.194 1.194 23 H -0.195 1.195 24 H -0.197 1.197 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.153 0.847 30 H 0.150 0.850 31 H 0.158 0.842 32 H 0.117 0.883 33 H 0.127 0.873 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.311 2.414 1.496 3.128 hybrid contribution -0.599 1.574 0.120 1.688 sum 0.712 3.988 1.616 4.361 Atomic orbital electron populations 1.20438 0.93017 1.00913 1.00091 1.19405 0.94735 0.92739 1.13333 1.20365 0.92790 0.96359 0.96455 1.17881 0.92528 0.90117 1.22895 1.18978 0.92346 0.92391 0.87210 1.20912 0.93714 0.97987 1.05723 1.20550 0.99680 0.89851 0.94582 1.15775 0.89967 0.88183 1.19552 1.25512 0.93409 0.92645 0.92938 1.81174 1.08904 1.10538 1.11009 1.17502 0.87995 0.81338 0.98972 1.91496 1.80235 1.46364 1.93464 1.21045 1.01015 0.89857 1.09506 1.20484 0.97601 0.92088 0.96289 1.20860 0.94272 0.96851 1.12481 1.17702 0.91818 0.92342 0.88061 1.20936 1.03197 0.93646 1.32184 0.89425 1.27315 0.92650 1.06064 0.93221 1.70442 1.20585 1.32284 1.15302 0.83609 0.77256 0.72914 0.77491 1.19444 1.19549 1.19677 0.93630 0.93919 0.92003 0.88421 0.84710 0.85013 0.84210 0.88308 0.87326 0.88044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.57 9.39 36.01 0.34 -1.24 16 2 C -0.20 -4.17 5.90 -104.32 -0.62 -4.79 16 3 C -0.04 -0.80 8.99 -39.65 -0.36 -1.15 16 4 C -0.23 -4.38 5.90 -104.64 -0.62 -5.00 16 5 C 0.09 1.48 5.88 -104.83 -0.62 0.86 16 6 C -0.17 -2.30 9.36 -39.61 -0.37 -2.67 16 7 C -0.03 -0.33 9.69 -39.60 -0.38 -0.71 16 8 C -0.13 -1.84 5.75 -106.67 -0.61 -2.45 16 9 C 0.27 4.09 14.96 -22.47 -0.34 3.75 16 10 N -0.44 -7.35 18.54 41.84 0.78 -6.57 16 11 C 0.16 2.43 7.27 -39.00 -0.28 2.15 16 12 F -0.14 -2.10 16.81 2.25 0.04 -2.06 16 13 C -0.20 -2.96 9.39 -39.16 -0.37 -3.33 16 14 C -0.05 -0.90 9.35 -39.64 -0.37 -1.27 16 15 C -0.23 -4.92 7.88 -39.28 -0.31 -5.23 16 16 C 0.10 2.36 5.29 -106.80 -0.57 1.79 16 17 C -0.47 -10.63 8.05 -37.86 -0.30 -10.93 16 18 H 0.09 1.89 6.91 -52.49 -0.36 1.52 16 19 C 0.03 0.71 4.93 -17.32 -0.09 0.63 16 20 N -0.77 -17.58 12.31 55.55 0.68 -16.89 16 21 Si 1.07 18.39 30.00 -169.99 -5.10 13.29 16 22 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 23 H -0.27 -4.54 7.11 56.52 0.40 -4.14 16 24 H -0.27 -4.44 7.11 56.52 0.40 -4.04 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.04 0.67 8.08 -51.93 -0.42 0.26 16 27 H 0.06 1.13 6.76 -51.93 -0.35 0.78 16 28 H 0.10 1.65 6.16 -52.49 -0.32 1.33 16 29 H 0.14 1.71 6.15 -52.49 -0.32 1.38 16 30 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.14 2.00 6.16 -52.49 -0.32 1.68 16 32 H 0.10 1.66 6.16 -52.48 -0.32 1.34 16 33 H 0.11 2.44 6.50 -52.49 -0.34 2.10 16 34 H 0.31 7.19 6.70 -40.82 -0.27 6.92 16 LS Contribution 302.74 15.07 4.56 4.56 Total: -1.00 -23.63 302.74 -7.58 -31.21 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -2.68 Total: 6.05 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -5.86 Total: -29.59 kcal Atomic # 7 Polarization: -24.92 SS G_CDS: 1.46 Total: -23.46 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.10 Total: 13.29 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -23.63 -7.58 -31.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240154734.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.749 kcal (2) G-P(sol) polarization free energy of solvation -23.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds