Wall clock time and date at job start Tue Mar 31 2020 05:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38188 * 120.08160 * 2 1 4 4 F 1.35092 * 119.96030 * 0.02562 * 3 2 1 5 5 C 1.38595 * 120.08570 * 180.02562 * 3 2 1 6 6 C 1.38371 * 120.26161 * 0.02562 * 5 3 2 7 7 C 1.37930 * 120.17168 * 359.71943 * 6 5 3 8 8 C 1.39529 * 120.08191 * 180.02562 * 2 1 3 9 9 C 1.48026 * 120.13300 * 359.97438 * 8 2 1 10 10 C 1.39973 * 119.49659 * 309.97794 * 9 8 2 11 11 C 1.36013 * 121.18862 * 180.02562 * 10 9 8 12 12 C 1.41036 * 120.11162 * 359.97438 * 11 10 9 13 13 C 1.40453 * 120.48886 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99382 * 204.71928 * 13 12 11 15 15 C 1.40302 * 120.00206 * 24.71862 * 13 12 11 16 16 N 1.30630 * 120.00188 * 17.50378 * 15 13 12 17 17 Si 1.86797 * 119.99956 * 197.50649 * 15 13 12 18 18 H 1.48500 * 109.47344 * 90.00252 * 17 15 13 19 19 H 1.48507 * 109.47059 * 209.99683 * 17 15 13 20 20 H 1.48497 * 109.47470 * 329.99700 * 17 15 13 21 21 C 1.46642 * 119.02033 * 359.77969 * 12 11 10 22 22 C 1.43196 * 120.56698 * 180.22553 * 21 12 11 23 23 N 7.02919 * 91.60409 * 202.11561 * 2 1 3 24 24 C 1.39094 * 118.86585 * 0.48273 * 21 12 11 25 25 H 1.09003 * 109.47170 * 269.97539 * 1 2 3 26 26 H 1.08997 * 109.47081 * 29.97885 * 1 2 3 27 27 H 1.08998 * 109.47027 * 149.98334 * 1 2 3 28 28 H 1.08003 * 119.86616 * 179.97438 * 5 3 2 29 29 H 1.08000 * 119.90960 * 180.02562 * 6 5 3 30 30 H 1.08000 * 120.04830 * 180.29719 * 7 6 5 31 31 H 1.07993 * 119.40353 * 359.97438 * 10 9 8 32 32 H 1.08008 * 119.94504 * 179.97438 * 11 10 9 33 33 H 0.96997 * 120.00222 * 179.97438 * 16 15 13 34 34 H 1.08002 * 120.09650 * 179.76749 * 24 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1997 1.1958 0.0000 4 9 1.5251 2.3662 0.0005 5 6 3.5856 1.1959 -0.0005 6 6 4.2831 0.0007 -0.0016 7 6 3.6026 -1.1990 0.0037 8 6 2.2064 -1.2074 -0.0005 9 6 1.4711 -2.4921 -0.0005 10 6 0.4498 -2.7016 0.9334 11 6 -0.2476 -3.8689 0.9645 12 6 0.0512 -4.8963 0.0457 13 6 -0.6643 -6.1047 0.0704 14 1 -0.2154 -7.0061 -0.3201 15 6 -1.9621 -6.1409 0.6023 16 7 -2.6358 -5.0324 0.7567 17 14 -2.7265 -7.7741 1.0898 18 1 -2.4041 -8.0674 2.5094 19 1 -4.2002 -7.7006 0.9219 20 1 -2.1831 -8.8526 0.2257 21 6 1.1162 -4.6822 -0.9393 22 6 1.4438 -5.7011 -1.8907 23 7 1.7038 -6.5095 -2.6453 24 6 1.8064 -3.4747 -0.9303 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5141 28 1 4.1234 2.1325 -0.0010 29 1 5.3630 0.0075 -0.0016 30 1 4.1489 -2.1306 0.0077 31 1 0.2118 -1.9227 1.6425 32 1 -1.0316 -4.0093 1.6941 33 1 -3.5332 -5.0575 1.1241 34 1 2.5970 -3.2974 -1.6444 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240729431.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:47 Heat of formation + Delta-G solvation = -1.384999 kcal Electronic energy + Delta-G solvation = -20225.136699 eV Core-core repulsion = 17000.850862 eV Total energy + Delta-G solvation = -3224.285837 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.79954 -40.47975 -38.95142 -36.97957 -35.94855 -33.88722 -32.55079 -31.59183 -30.43918 -28.10697 -27.02603 -24.18112 -23.74114 -22.36093 -21.96465 -19.51484 -19.04512 -17.68633 -17.38781 -16.99966 -16.57294 -16.51089 -16.00299 -15.70023 -15.11220 -14.63648 -14.53164 -14.31505 -14.24947 -14.06032 -13.68675 -13.56939 -13.46210 -13.30215 -13.18972 -12.86334 -12.66717 -12.49708 -12.36925 -12.22239 -11.89783 -11.53911 -11.45055 -11.21516 -9.89645 -9.48867 -9.46084 -9.08342 -8.86286 -6.53636 0.17916 0.35879 0.46311 1.03288 1.36907 1.48641 1.50896 2.03418 2.12168 2.35746 2.62151 2.81504 3.36931 3.58721 3.66504 3.93273 3.98235 4.22521 4.25344 4.33737 4.51379 4.58226 4.78420 4.83328 4.91253 4.97128 5.07452 5.15593 5.22093 5.30869 5.38811 5.45551 5.50892 5.62314 5.82367 5.89993 6.09031 6.09644 6.15390 6.43843 6.60859 6.77229 6.96620 8.02373 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.022468 B = 0.004641 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.911191 B = 6031.176152 C = 6926.528392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.133 4.133 3 C 0.079 3.921 4 F -0.149 7.149 5 C -0.165 4.165 6 C -0.087 4.087 7 C -0.134 4.134 8 C 0.010 3.990 9 C -0.191 4.191 10 C -0.044 4.044 11 C -0.180 4.180 12 C 0.135 3.865 13 C -0.454 4.454 14 H 0.072 0.928 15 C 0.046 3.954 16 N -0.775 5.775 17 Si 0.978 3.022 18 H -0.251 1.251 19 H -0.259 1.259 20 H -0.269 1.269 21 C -0.210 4.210 22 C 0.305 3.695 23 N -0.530 5.530 24 C 0.000 4.000 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.154 0.846 29 H 0.162 0.838 30 H 0.136 0.864 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.303 0.697 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.998 9.841 4.158 11.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.134 4.134 3 C 0.060 3.940 4 F -0.127 7.127 5 C -0.183 4.183 6 C -0.105 4.105 7 C -0.152 4.152 8 C 0.009 3.991 9 C -0.192 4.192 10 C -0.063 4.063 11 C -0.199 4.199 12 C 0.130 3.870 13 C -0.481 4.481 14 H 0.090 0.910 15 C -0.176 4.176 16 N -0.397 5.397 17 Si 0.798 3.202 18 H -0.175 1.175 19 H -0.183 1.183 20 H -0.194 1.194 21 C -0.216 4.216 22 C -0.003 4.003 23 N -0.210 5.210 24 C -0.020 4.020 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.171 0.829 29 H 0.180 0.820 30 H 0.154 0.846 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.115 0.885 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.120 8.756 3.051 10.592 hybrid contribution -0.865 -0.290 0.306 0.963 sum 4.255 8.465 3.358 10.052 Atomic orbital electron populations 1.20736 0.90396 1.02715 1.02706 1.20123 0.97224 0.91548 1.04516 1.17650 0.90885 0.80246 1.05246 1.91427 1.80866 1.46206 1.94238 1.21366 0.91278 1.00963 1.04737 1.21208 1.01382 0.90403 0.97493 1.21594 0.92821 0.99508 1.01291 1.18619 0.93141 0.90859 0.96431 1.17863 1.03544 0.94237 1.03557 1.20676 0.93079 0.96122 0.96434 1.20878 1.03065 0.94706 1.01296 1.18749 0.88071 0.92768 0.87410 1.19919 0.99199 0.95978 1.32962 0.91031 1.26780 0.96855 1.02054 0.91942 1.69691 1.11739 1.30704 1.27564 0.85233 0.78020 0.76864 0.80062 1.17507 1.18263 1.19361 1.16925 1.10320 0.93385 1.00969 1.25962 0.90630 0.92066 0.91659 1.81005 1.13767 1.11819 1.14388 1.20697 0.95592 0.90000 0.95740 0.90619 0.91515 0.91538 0.82865 0.82036 0.84604 0.86785 0.86369 0.88499 0.86244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.27 8.25 71.24 0.59 -2.69 16 2 C -0.13 -4.08 5.87 -19.56 -0.11 -4.19 16 3 C 0.08 2.19 7.23 22.34 0.16 2.35 16 4 F -0.15 -4.18 16.47 44.97 0.74 -3.44 16 5 C -0.16 -3.70 10.02 22.39 0.22 -3.47 16 6 C -0.09 -1.83 10.03 22.23 0.22 -1.61 16 7 C -0.13 -3.52 9.48 22.53 0.21 -3.30 16 8 C 0.01 0.31 5.44 -20.04 -0.11 0.20 16 9 C -0.19 -6.99 4.74 -19.99 -0.09 -7.09 16 10 C -0.04 -1.70 7.75 22.17 0.17 -1.53 16 11 C -0.18 -7.93 8.63 22.44 0.19 -7.73 16 12 C 0.14 6.43 5.74 -19.86 -0.11 6.32 16 13 C -0.45 -22.04 8.56 23.31 0.20 -21.84 16 14 H 0.07 3.59 7.38 -2.91 -0.02 3.57 16 15 C 0.05 2.03 5.15 85.37 0.44 2.47 16 16 N -0.78 -34.22 10.95 21.89 0.24 -33.98 16 17 Si 0.98 33.98 29.60 68.60 2.03 36.01 16 18 H -0.25 -8.29 7.11 99.48 0.71 -7.58 16 19 H -0.26 -8.38 7.11 99.48 0.71 -7.67 16 20 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 21 C -0.21 -9.43 5.93 -19.63 -0.12 -9.54 16 22 C 0.31 14.28 14.29 88.33 1.26 15.54 16 23 N -0.53 -25.51 18.54 19.00 0.35 -25.16 16 24 C 0.00 0.01 9.18 22.75 0.21 0.22 16 25 H 0.08 2.12 7.46 -2.39 -0.02 2.11 16 26 H 0.07 1.84 7.64 -2.39 -0.02 1.82 16 27 H 0.07 2.24 6.46 -2.39 -0.02 2.22 16 28 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 29 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 30 H 0.14 3.28 8.03 -2.91 -0.02 3.26 16 31 H 0.11 3.93 6.76 -2.91 -0.02 3.91 16 32 H 0.12 5.33 6.17 -2.91 -0.02 5.31 16 33 H 0.30 11.81 8.29 -92.71 -0.77 11.04 16 34 H 0.12 4.12 8.02 -2.91 -0.02 4.10 16 Total: -1.00 -52.57 305.50 7.85 -44.72 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 1.15 Total: 17.74 kcal Atomic # 6 Polarization: -39.23 SS G_CDS: 3.34 Total: -35.90 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: 0.59 Total: -59.14 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.74 Total: -3.44 kcal Atomic # 14 Polarization: 33.98 SS G_CDS: 2.03 Total: 36.01 kcal Total: -52.57 7.85 -44.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240729431.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.334 kcal (2) G-P(sol) polarization free energy of solvation -52.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds