Wall clock time and date at job start Tue Mar 31 2020 05:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36275 * 119.94498 * 2 1 4 4 C 1.40911 * 119.87872 * 180.25156 * 3 2 1 5 5 C 1.41023 * 120.11756 * 179.75714 * 4 3 2 6 6 H 1.08004 * 120.00371 * 204.65441 * 5 4 3 7 7 C 1.40014 * 119.99987 * 24.65638 * 5 4 3 8 8 N 1.30791 * 120.00047 * 17.96218 * 7 5 4 9 9 Si 1.86805 * 119.99839 * 197.96282 * 7 5 4 10 10 H 1.48495 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46780 * 120.00253 * 9 7 5 12 12 H 1.48503 * 109.47190 * 239.99886 * 9 7 5 13 13 C 1.40942 * 119.76225 * 359.74060 * 4 3 2 14 14 C 1.36238 * 119.87859 * 359.97438 * 13 4 3 15 15 C 1.39913 * 119.93588 * 179.73403 * 2 1 3 16 16 C 1.48008 * 119.88052 * 0.02581 * 15 2 1 17 17 C 1.39678 * 120.05541 * 309.72066 * 16 15 2 18 18 C 1.38256 * 120.13480 * 179.97438 * 17 16 15 19 19 F 1.35099 * 119.87597 * 180.28039 * 18 17 16 20 20 C 1.38352 * 120.25322 * 359.97438 * 18 17 16 21 21 C 1.39701 * 120.11186 * 0.02562 * 20 18 17 22 22 C 1.43194 * 120.06911 * 179.97438 * 21 20 18 23 23 N 7.02944 * 91.10459 * 201.69248 * 2 1 3 24 24 C 1.39330 * 120.05996 * 129.72337 * 16 15 2 25 25 H 1.08997 * 109.47146 * 270.26621 * 1 2 3 26 26 H 1.09004 * 109.46862 * 30.26134 * 1 2 3 27 27 H 1.08998 * 109.47520 * 150.26343 * 1 2 3 28 28 H 1.08003 * 120.06057 * 359.96861 * 3 2 1 29 29 H 0.96998 * 119.99982 * 179.97438 * 8 7 5 30 30 H 1.08005 * 120.06265 * 180.02562 * 13 4 3 31 31 H 1.08001 * 119.94236 * 179.97438 * 14 13 4 32 32 H 1.08000 * 119.93446 * 359.97438 * 17 16 15 33 33 H 1.08002 * 119.94105 * 179.97438 * 20 18 17 34 34 H 1.08000 * 120.12704 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1872 1.1808 0.0000 4 6 3.5963 1.1792 -0.0054 5 6 4.3053 2.3982 -0.0106 6 1 5.3101 2.4369 -0.4046 7 6 3.7066 3.5585 0.4952 8 7 2.6626 3.4678 1.2778 9 14 4.3989 5.2360 0.0521 10 1 5.5728 5.0667 -0.8415 11 1 3.3576 6.0328 -0.6450 12 1 4.8163 5.9420 1.2901 13 6 4.2945 -0.0451 -0.0052 14 6 3.6046 -1.2199 0.0007 15 6 2.2052 -1.2125 0.0056 16 6 1.4610 -2.4918 0.0110 17 6 0.4411 -2.7040 0.9414 18 6 -0.2554 -3.8983 0.9476 19 9 -1.2447 -4.0957 1.8462 20 6 0.0526 -4.8896 0.0329 21 6 1.0707 -4.6885 -0.9023 22 6 1.3891 -5.7153 -1.8482 23 7 1.6425 -6.5304 -2.5978 24 6 1.7767 -3.4867 -0.9120 25 1 -0.3633 0.0048 1.0276 26 1 -0.3633 0.8877 -0.5179 27 1 -0.3634 -0.8923 -0.5097 28 1 1.6473 2.1162 -0.0005 29 1 2.2481 4.2716 1.6285 30 1 5.3745 -0.0520 -0.0088 31 1 4.1386 -2.1586 0.0005 32 1 0.1961 -1.9336 1.6576 33 1 -0.4945 -5.8207 0.0425 34 1 2.5643 -3.3267 -1.6334 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241659279.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:55 Heat of formation + Delta-G solvation = 11.886446 kcal Electronic energy + Delta-G solvation = -20024.952043 eV Core-core repulsion = 16801.241699 eV Total energy + Delta-G solvation = -3223.710344 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.81261 -39.42642 -37.73856 -36.31131 -34.20409 -32.22568 -31.31695 -30.68790 -28.91623 -26.06205 -25.53222 -23.82402 -22.59586 -20.74556 -20.00201 -18.45114 -17.28550 -16.41532 -16.22942 -15.88313 -15.54588 -15.38514 -14.63532 -14.05047 -13.84558 -13.76515 -13.54644 -13.25507 -12.84887 -12.80868 -12.52228 -12.07511 -11.98988 -11.85476 -11.64889 -11.52128 -11.42768 -11.23055 -11.00123 -10.70244 -10.44832 -9.81077 -9.66355 -9.43090 -8.78336 -8.64831 -7.56267 -7.39222 -7.00017 -4.55655 0.75201 1.20930 2.47654 2.61435 2.88591 2.92752 2.96144 3.00707 3.12283 3.74495 3.75581 3.87072 4.34432 4.51679 4.88535 5.07668 5.19096 5.39305 5.44488 5.74643 5.88933 5.96158 6.08315 6.15086 6.20653 6.27122 6.33223 6.53278 6.57109 6.75376 6.84808 6.90838 7.11397 7.15423 7.42334 7.43094 7.68400 7.85068 7.91600 8.07600 8.40642 8.64785 8.75232 9.91386 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.026520 B = 0.004023 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.550389 B = 6958.642350 C = 7695.867321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.042 4.042 3 C -0.169 4.169 4 C 0.121 3.879 5 C -0.446 4.446 6 H 0.083 0.917 7 C 0.075 3.925 8 N -0.776 5.776 9 Si 0.910 3.090 10 H -0.258 1.258 11 H -0.270 1.270 12 H -0.272 1.272 13 C -0.232 4.232 14 C -0.056 4.056 15 C -0.219 4.219 16 C 0.052 3.948 17 C -0.132 4.132 18 C 0.101 3.899 19 F -0.140 7.140 20 C -0.139 4.139 21 C -0.003 4.003 22 C 0.265 3.735 23 N -0.425 5.425 24 C -0.090 4.090 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.120 0.880 29 H 0.285 0.715 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.468 -5.642 0.050 7.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.042 4.042 3 C -0.188 4.188 4 C 0.118 3.882 5 C -0.474 4.474 6 H 0.101 0.899 7 C -0.146 4.146 8 N -0.399 5.399 9 Si 0.734 3.266 10 H -0.182 1.182 11 H -0.195 1.195 12 H -0.197 1.197 13 C -0.252 4.252 14 C -0.074 4.074 15 C -0.220 4.220 16 C 0.051 3.949 17 C -0.152 4.152 18 C 0.082 3.918 19 F -0.119 7.119 20 C -0.160 4.160 21 C -0.006 4.006 22 C -0.050 4.050 23 N -0.100 5.100 24 C -0.111 4.111 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.138 0.862 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.159 0.841 33 H 0.154 0.846 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.274 -6.760 -0.931 8.052 hybrid contribution 0.003 1.087 0.452 1.177 sum -4.271 -5.674 -0.479 7.118 Atomic orbital electron populations 1.20817 0.93707 1.01128 1.00910 1.19194 0.93724 0.92661 0.98613 1.20864 0.94235 0.96177 1.07520 1.17715 0.92089 0.92154 0.86200 1.19753 1.01397 0.92371 1.33907 0.89925 1.26022 0.94154 1.01866 0.92530 1.69809 1.17605 1.31886 1.20635 0.86222 0.80219 0.80678 0.79519 1.18164 1.19454 1.19750 1.20658 0.97906 0.92483 1.14114 1.20270 0.92375 0.96703 0.98101 1.17709 0.92304 0.89194 1.22771 1.18661 0.92110 0.93357 0.90749 1.21681 0.97095 0.96037 1.00357 1.17307 0.89170 0.95130 0.90205 1.91499 1.59157 1.95468 1.65739 1.20838 0.99317 0.99818 0.96051 1.15563 0.99153 0.91192 0.94695 1.25641 0.93406 0.92910 0.93082 1.81221 1.08486 1.10215 1.10109 1.21474 0.99517 0.91138 0.98930 0.92361 0.92664 0.92775 0.86192 0.90441 0.88673 0.88986 0.84059 0.84624 0.84587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 8.43 36.00 0.30 -1.54 16 2 C -0.04 -0.85 5.83 -104.70 -0.61 -1.46 16 3 C -0.17 -3.94 8.26 -39.28 -0.32 -4.26 16 4 C 0.12 2.94 5.57 -106.81 -0.60 2.34 16 5 C -0.45 -10.81 9.03 -37.86 -0.34 -11.15 16 6 H 0.08 1.93 7.91 -52.48 -0.42 1.51 16 7 C 0.07 1.71 5.13 -17.33 -0.09 1.62 16 8 N -0.78 -18.27 10.96 55.55 0.61 -17.66 16 9 Si 0.91 17.06 29.60 -169.99 -5.03 12.03 16 10 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 11 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 12 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 13 C -0.23 -5.15 9.73 -39.28 -0.38 -5.53 16 14 C -0.06 -1.12 9.43 -39.66 -0.37 -1.49 16 15 C -0.22 -4.20 5.49 -104.62 -0.57 -4.78 16 16 C 0.05 0.82 4.70 -104.95 -0.49 0.32 16 17 C -0.13 -1.93 7.86 -39.04 -0.31 -2.23 16 18 C 0.10 1.33 7.28 -39.53 -0.29 1.05 16 19 F -0.14 -1.86 17.26 2.25 0.04 -1.82 16 20 C -0.14 -1.66 9.73 -38.99 -0.38 -2.04 16 21 C 0.00 -0.03 5.72 -107.00 -0.61 -0.65 16 22 C 0.26 3.56 15.32 -22.48 -0.34 3.22 16 23 N -0.43 -6.43 18.54 41.84 0.78 -5.65 16 24 C -0.09 -1.26 9.20 -38.75 -0.36 -1.62 16 25 H 0.06 0.93 7.49 -51.93 -0.39 0.54 16 26 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 27 H 0.05 0.84 6.44 -51.93 -0.33 0.50 16 28 H 0.12 2.91 6.16 -52.48 -0.32 2.59 16 29 H 0.28 6.04 8.30 -40.82 -0.34 5.71 16 30 H 0.10 1.99 8.06 -52.48 -0.42 1.57 16 31 H 0.09 1.60 8.03 -52.49 -0.42 1.18 16 32 H 0.14 2.07 6.85 -52.49 -0.36 1.71 16 33 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.14 1.83 8.03 -52.49 -0.42 1.41 16 LS Contribution 307.80 15.07 4.64 4.64 Total: -1.00 -24.41 307.80 -7.80 -32.21 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -3.06 Total: 4.46 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: -5.77 Total: -28.21 kcal Atomic # 7 Polarization: -24.70 SS G_CDS: 1.38 Total: -23.31 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.03 Total: 12.03 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -24.41 -7.80 -32.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241659279.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.097 kcal (2) G-P(sol) polarization free energy of solvation -24.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds