Wall clock time and date at job start Tue Mar 31 2020 05:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36275 * 119.94498 * 2 1 4 4 C 1.40911 * 119.87872 * 180.25156 * 3 2 1 5 5 C 1.41023 * 120.11756 * 179.75714 * 4 3 2 6 6 H 1.08004 * 120.00371 * 204.65441 * 5 4 3 7 7 C 1.40014 * 119.99987 * 24.65638 * 5 4 3 8 8 N 1.30791 * 120.00047 * 17.96218 * 7 5 4 9 9 Si 1.86805 * 119.99839 * 197.96282 * 7 5 4 10 10 H 1.48495 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46780 * 120.00253 * 9 7 5 12 12 H 1.48503 * 109.47190 * 239.99886 * 9 7 5 13 13 C 1.40942 * 119.76225 * 359.74060 * 4 3 2 14 14 C 1.36238 * 119.87859 * 359.97438 * 13 4 3 15 15 C 1.39913 * 119.93588 * 179.73403 * 2 1 3 16 16 C 1.48008 * 119.88052 * 0.02581 * 15 2 1 17 17 C 1.39678 * 120.05541 * 309.72066 * 16 15 2 18 18 C 1.38256 * 120.13480 * 179.97438 * 17 16 15 19 19 F 1.35099 * 119.87597 * 180.28039 * 18 17 16 20 20 C 1.38352 * 120.25322 * 359.97438 * 18 17 16 21 21 C 1.39701 * 120.11186 * 0.02562 * 20 18 17 22 22 C 1.43194 * 120.06911 * 179.97438 * 21 20 18 23 23 N 7.02944 * 91.10459 * 201.69248 * 2 1 3 24 24 C 1.39330 * 120.05996 * 129.72337 * 16 15 2 25 25 H 1.08997 * 109.47146 * 270.26621 * 1 2 3 26 26 H 1.09004 * 109.46862 * 30.26134 * 1 2 3 27 27 H 1.08998 * 109.47520 * 150.26343 * 1 2 3 28 28 H 1.08003 * 120.06057 * 359.96861 * 3 2 1 29 29 H 0.96998 * 119.99982 * 179.97438 * 8 7 5 30 30 H 1.08005 * 120.06265 * 180.02562 * 13 4 3 31 31 H 1.08001 * 119.94236 * 179.97438 * 14 13 4 32 32 H 1.08000 * 119.93446 * 359.97438 * 17 16 15 33 33 H 1.08002 * 119.94105 * 179.97438 * 20 18 17 34 34 H 1.08000 * 120.12704 * 359.97438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1872 1.1808 0.0000 4 6 3.5963 1.1792 -0.0054 5 6 4.3053 2.3982 -0.0106 6 1 5.3101 2.4369 -0.4046 7 6 3.7066 3.5585 0.4952 8 7 2.6626 3.4678 1.2778 9 14 4.3989 5.2360 0.0521 10 1 5.5728 5.0667 -0.8415 11 1 3.3576 6.0328 -0.6450 12 1 4.8163 5.9420 1.2901 13 6 4.2945 -0.0451 -0.0052 14 6 3.6046 -1.2199 0.0007 15 6 2.2052 -1.2125 0.0056 16 6 1.4610 -2.4918 0.0110 17 6 0.4411 -2.7040 0.9414 18 6 -0.2554 -3.8983 0.9476 19 9 -1.2447 -4.0957 1.8462 20 6 0.0526 -4.8896 0.0329 21 6 1.0707 -4.6885 -0.9023 22 6 1.3891 -5.7153 -1.8482 23 7 1.6425 -6.5304 -2.5978 24 6 1.7767 -3.4867 -0.9120 25 1 -0.3633 0.0048 1.0276 26 1 -0.3633 0.8877 -0.5179 27 1 -0.3634 -0.8923 -0.5097 28 1 1.6473 2.1162 -0.0005 29 1 2.2481 4.2716 1.6285 30 1 5.3745 -0.0520 -0.0088 31 1 4.1386 -2.1586 0.0005 32 1 0.1961 -1.9336 1.6576 33 1 -0.4945 -5.8207 0.0425 34 1 2.5643 -3.3267 -1.6334 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241659279.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:54 Heat of formation + Delta-G solvation = 3.615428 kcal Electronic energy + Delta-G solvation = -20025.310701 eV Core-core repulsion = 16801.241699 eV Total energy + Delta-G solvation = -3224.069002 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.86577 -40.70504 -39.20988 -37.49305 -35.80301 -33.72485 -32.73888 -31.87386 -30.41470 -27.61318 -27.06672 -24.98077 -23.96215 -22.19545 -21.55744 -19.72204 -18.99328 -17.52218 -17.34965 -17.13398 -16.88144 -16.60293 -16.08164 -15.55166 -15.38994 -14.95797 -14.63750 -14.47541 -14.36031 -14.17378 -13.68653 -13.60222 -13.45023 -13.24857 -12.97853 -12.79959 -12.76769 -12.74159 -12.46589 -12.22180 -11.95072 -11.40740 -11.27229 -11.05439 -10.04598 -9.78694 -9.22166 -8.99999 -8.65924 -6.32582 -0.35530 0.06567 0.95215 1.22851 1.40057 1.48014 1.53563 1.54395 1.86682 2.20059 2.62938 2.65224 2.82319 3.35410 3.73636 3.82069 3.97030 4.07199 4.23919 4.40035 4.44583 4.59564 4.72515 4.90583 4.93889 5.02191 5.07015 5.13760 5.15129 5.19124 5.31004 5.49384 5.52447 5.74231 5.76684 6.04886 6.14037 6.25285 6.35806 6.39174 6.69721 6.92147 7.04451 8.27826 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.026520 B = 0.004023 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.550389 B = 6958.642350 C = 7695.867321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.050 4.050 3 C -0.193 4.193 4 C 0.089 3.911 5 C -0.491 4.491 6 H 0.076 0.924 7 C 0.039 3.961 8 N -0.811 5.811 9 Si 0.978 3.022 10 H -0.259 1.259 11 H -0.264 1.264 12 H -0.266 1.266 13 C -0.251 4.251 14 C -0.061 4.061 15 C -0.201 4.201 16 C 0.029 3.971 17 C -0.125 4.125 18 C 0.102 3.898 19 F -0.138 7.138 20 C -0.110 4.110 21 C 0.004 3.996 22 C 0.285 3.715 23 N -0.451 5.451 24 C -0.079 4.079 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.290 0.710 30 H 0.096 0.904 31 H 0.120 0.880 32 H 0.139 0.861 33 H 0.166 0.834 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.797 -7.755 -0.061 9.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.051 4.051 3 C -0.212 4.212 4 C 0.087 3.913 5 C -0.519 4.519 6 H 0.094 0.906 7 C -0.178 4.178 8 N -0.436 5.436 9 Si 0.799 3.201 10 H -0.183 1.183 11 H -0.188 1.188 12 H -0.191 1.191 13 C -0.270 4.270 14 C -0.079 4.079 15 C -0.202 4.202 16 C 0.029 3.971 17 C -0.145 4.145 18 C 0.083 3.917 19 F -0.116 7.116 20 C -0.131 4.131 21 C 0.001 3.999 22 C -0.030 4.030 23 N -0.127 5.127 24 C -0.099 4.099 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.120 0.880 29 H 0.101 0.899 30 H 0.115 0.885 31 H 0.138 0.862 32 H 0.157 0.843 33 H 0.183 0.817 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -5.608 -8.893 -1.042 10.565 hybrid contribution 0.277 1.400 0.497 1.512 sum -5.331 -7.493 -0.545 9.212 Atomic orbital electron populations 1.20806 0.91182 1.02050 1.01885 1.19597 0.95758 0.92271 0.97442 1.20833 0.94171 0.96659 1.09566 1.18048 0.92891 0.93059 0.87346 1.19916 1.01760 0.93770 1.36499 0.90584 1.26736 0.94366 1.04834 0.91870 1.69850 1.19018 1.32969 1.21789 0.85208 0.79394 0.76248 0.79230 1.18269 1.18846 1.19059 1.20838 0.98262 0.92933 1.14964 1.20590 0.93048 0.96993 0.97272 1.18032 0.92357 0.90469 1.19373 1.18354 0.93374 0.92541 0.92838 1.21631 0.96395 0.96673 0.99785 1.17197 0.89157 0.94784 0.90550 1.91518 1.59005 1.95379 1.65715 1.21123 0.97792 1.00217 0.93927 1.15404 0.99260 0.90472 0.94811 1.25520 0.92610 0.92371 0.92502 1.81268 1.09321 1.11168 1.10934 1.21444 0.99330 0.90900 0.98258 0.91235 0.92693 0.90851 0.88041 0.89890 0.88543 0.86200 0.84340 0.81684 0.84080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.37 8.43 71.23 0.60 -2.77 16 2 C -0.05 -2.07 5.83 -19.92 -0.12 -2.19 16 3 C -0.19 -9.40 8.26 22.47 0.19 -9.21 16 4 C 0.09 4.54 5.57 -21.28 -0.12 4.42 16 5 C -0.49 -25.24 9.03 23.38 0.21 -25.03 16 6 H 0.08 3.80 7.91 -2.91 -0.02 3.78 16 7 C 0.04 1.85 5.13 85.28 0.44 2.29 16 8 N -0.81 -40.06 10.96 21.84 0.24 -39.82 16 9 Si 0.98 36.28 29.60 68.60 2.03 38.31 16 10 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 11 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 12 H -0.27 -9.46 7.11 99.48 0.71 -8.76 16 13 C -0.25 -11.48 9.73 22.47 0.22 -11.26 16 14 C -0.06 -2.40 9.43 22.22 0.21 -2.19 16 15 C -0.20 -7.53 5.49 -19.87 -0.11 -7.64 16 16 C 0.03 0.85 4.70 -20.08 -0.09 0.75 16 17 C -0.13 -3.26 7.86 22.62 0.18 -3.08 16 18 C 0.10 2.27 7.28 22.30 0.16 2.43 16 19 F -0.14 -3.12 17.26 44.97 0.78 -2.34 16 20 C -0.11 -2.08 9.73 22.65 0.22 -1.86 16 21 C 0.00 0.09 5.72 -21.41 -0.12 -0.04 16 22 C 0.28 6.64 15.32 88.33 1.35 7.99 16 23 N -0.45 -12.37 18.54 19.00 0.35 -12.02 16 24 C -0.08 -1.94 9.20 22.81 0.21 -1.73 16 25 H 0.07 2.12 7.49 -2.39 -0.02 2.10 16 26 H 0.05 1.79 8.08 -2.38 -0.02 1.77 16 27 H 0.07 2.09 6.44 -2.39 -0.02 2.08 16 28 H 0.10 5.23 6.16 -2.91 -0.02 5.21 16 29 H 0.29 12.87 8.30 -92.71 -0.77 12.10 16 30 H 0.10 4.22 8.06 -2.91 -0.02 4.20 16 31 H 0.12 3.95 8.03 -2.91 -0.02 3.93 16 32 H 0.14 3.71 6.85 -2.91 -0.02 3.69 16 33 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 34 H 0.14 3.37 8.03 -2.91 -0.02 3.35 16 Total: -1.00 -54.74 307.80 7.97 -46.77 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 1.14 Total: 18.21 kcal Atomic # 6 Polarization: -52.54 SS G_CDS: 3.43 Total: -49.12 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: 0.59 Total: -51.84 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.78 Total: -2.34 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 2.03 Total: 38.31 kcal Total: -54.74 7.97 -46.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241659279.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.383 kcal (2) G-P(sol) polarization free energy of solvation -54.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds