Wall clock time and date at job start Tue Mar 31 2020 05:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37624 * 120.06363 * 2 1 4 4 C 1.39828 * 119.86575 * 179.97438 * 3 2 1 5 5 C 1.43203 * 120.00548 * 180.02562 * 4 3 2 6 6 N 4.79798 * 134.77949 * 0.02562 * 2 1 3 7 7 C 1.39837 * 119.98845 * 0.28065 * 4 3 2 8 8 C 1.36555 * 120.11266 * 359.43137 * 7 4 3 9 9 C 1.39767 * 120.13527 * 0.57179 * 8 7 4 10 10 C 1.47860 * 119.99385 * 179.68680 * 9 8 7 11 11 C 1.40090 * 119.87189 * 236.36262 * 10 9 8 12 12 C 1.36152 * 120.18323 * 180.02562 * 11 10 9 13 13 C 1.40973 * 119.90654 * 359.97426 * 12 11 10 14 14 C 1.40894 * 120.13099 * 180.02562 * 13 12 11 15 15 H 1.07991 * 119.99788 * 322.14987 * 14 13 12 16 16 C 1.40060 * 119.99860 * 142.15271 * 14 13 12 17 17 N 1.30778 * 120.00247 * 339.17155 * 16 14 13 18 18 Si 1.86796 * 120.00061 * 159.17606 * 16 14 13 19 19 H 1.48504 * 109.47119 * 94.96886 * 18 16 14 20 20 H 1.48498 * 109.47460 * 214.97358 * 18 16 14 21 21 H 1.48504 * 109.47192 * 334.97406 * 18 16 14 22 22 C 1.41197 * 119.73787 * 0.02562 * 13 12 11 23 23 F 1.35103 * 120.09176 * 179.97438 * 22 13 12 24 24 C 1.36541 * 119.81910 * 359.76553 * 22 13 12 25 25 H 1.09001 * 109.47237 * 95.43932 * 1 2 3 26 26 H 1.09000 * 109.47630 * 215.44327 * 1 2 3 27 27 H 1.09001 * 109.46994 * 335.44486 * 1 2 3 28 28 H 1.08003 * 120.06067 * 359.95782 * 3 2 1 29 29 H 1.07998 * 119.94391 * 179.70708 * 7 4 3 30 30 H 1.08001 * 119.93324 * 180.25876 * 8 7 4 31 31 H 1.08002 * 119.90473 * 359.97438 * 11 10 9 32 32 H 1.08003 * 120.04435 * 180.02562 * 12 11 10 33 33 H 0.97004 * 120.00361 * 180.02562 * 17 16 14 34 34 H 1.07995 * 119.95972 * 180.24674 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1964 1.1911 0.0000 4 6 3.5947 1.1863 0.0005 5 6 4.3151 2.4239 0.0011 6 7 4.8865 3.4057 0.0015 7 6 4.2894 -0.0273 -0.0048 8 6 3.6047 -1.2087 0.0011 9 6 2.2070 -1.2097 0.0005 10 6 1.4688 -2.4909 -0.0001 11 6 0.5378 -2.7592 -1.0119 12 6 -0.1459 -3.9366 -1.0183 13 6 0.0841 -4.8885 -0.0042 14 6 -0.6204 -6.1086 -0.0065 15 1 -1.6581 -6.1324 -0.3046 16 6 0.0251 -7.2907 0.3778 17 7 1.3305 -7.3633 0.3451 18 14 -0.9784 -8.7636 0.9369 19 1 -1.2006 -9.6766 -0.2131 20 1 -0.2444 -9.4853 2.0073 21 1 -2.2883 -8.3000 1.4610 22 6 1.0232 -4.6142 1.0138 23 9 1.2489 -5.5211 1.9895 24 6 1.7059 -3.4317 1.0072 25 1 -0.3634 -0.0974 -1.0230 26 1 -0.3634 -0.8372 0.5959 27 1 -0.3633 0.9347 0.4271 28 1 1.6584 2.1276 -0.0007 29 1 5.3694 -0.0302 -0.0092 30 1 4.1442 -2.1443 0.0011 31 1 0.3614 -2.0297 -1.7886 32 1 -0.8628 -4.1413 -1.7997 33 1 1.7776 -8.1821 0.6110 34 1 2.4276 -3.2213 1.7826 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242473184.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:12 Heat of formation + Delta-G solvation = 15.887329 kcal Electronic energy + Delta-G solvation = -20166.870085 eV Core-core repulsion = 16943.333233 eV Total energy + Delta-G solvation = -3223.536852 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.09235 -39.61042 -37.45431 -36.29560 -33.99231 -32.74934 -31.74990 -29.57041 -29.12316 -26.91495 -25.63704 -23.14294 -21.77686 -20.99192 -20.59029 -18.12565 -17.65476 -16.47221 -15.64824 -15.38549 -14.71010 -14.54345 -14.28038 -14.04855 -13.96941 -13.82483 -13.20813 -13.09693 -12.93405 -12.81993 -12.64454 -12.30646 -11.96609 -11.82348 -11.52046 -11.47483 -11.37976 -11.17661 -10.95536 -10.70788 -10.54230 -10.25188 -9.65470 -9.22069 -8.77668 -8.47945 -7.73718 -7.26863 -6.97908 -4.58941 0.86118 1.53411 2.41162 2.69245 2.70181 2.95491 3.01549 3.06313 3.14589 3.82714 3.98966 4.01056 4.40734 4.95646 4.98047 5.20094 5.24526 5.35890 5.55365 5.78262 5.84132 5.92062 5.94049 6.03992 6.09438 6.20914 6.41742 6.43333 6.49631 6.64077 6.79356 6.89295 6.96184 7.01730 7.31671 7.44155 7.53009 7.63857 7.68139 7.96597 8.22452 8.55949 8.66146 9.98804 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.039621 B = 0.003811 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.532809 B = 7345.672862 C = 7735.579782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.093 4.093 3 C -0.066 4.066 4 C -0.062 4.062 5 C 0.267 3.733 6 N -0.443 5.443 7 C -0.071 4.071 8 C -0.122 4.122 9 C 0.045 3.955 10 C -0.186 4.186 11 C -0.068 4.068 12 C -0.199 4.199 13 C 0.098 3.902 14 C -0.461 4.461 15 H 0.088 0.912 16 C 0.079 3.921 17 N -0.767 5.767 18 Si 0.909 3.091 19 H -0.270 1.270 20 H -0.273 1.273 21 H -0.258 1.258 22 C 0.031 3.969 23 F -0.146 7.146 24 C -0.104 4.104 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.132 0.868 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.287 0.713 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.320 6.677 -0.512 6.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.087 4.087 4 C -0.066 4.066 5 C -0.047 4.047 6 N -0.119 5.119 7 C -0.091 4.091 8 C -0.140 4.140 9 C 0.044 3.956 10 C -0.187 4.187 11 C -0.087 4.087 12 C -0.219 4.219 13 C 0.094 3.906 14 C -0.488 4.488 15 H 0.106 0.894 16 C -0.143 4.143 17 N -0.389 5.389 18 Si 0.733 3.267 19 H -0.195 1.195 20 H -0.198 1.198 21 H -0.182 1.182 22 C 0.011 3.989 23 F -0.125 7.125 24 C -0.123 4.123 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.144 0.856 29 H 0.143 0.857 30 H 0.150 0.850 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.098 0.902 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.787 7.997 -0.438 8.048 hybrid contribution -0.303 -1.329 0.387 1.417 sum 0.484 6.669 -0.051 6.686 Atomic orbital electron populations 1.20798 0.90486 1.02668 1.02698 1.19975 0.96552 0.91576 1.01175 1.20898 0.91576 0.98128 0.98087 1.15951 0.92172 0.86702 1.11774 1.25869 0.93076 0.92867 0.92895 1.81207 1.09040 1.11180 1.10426 1.20739 0.99689 0.90804 0.97890 1.21066 0.93781 0.97857 1.01301 1.19090 0.92320 0.92616 0.91579 1.17665 1.05659 0.94250 1.01114 1.20354 0.95318 0.96391 0.96625 1.20589 1.05490 0.96075 0.99732 1.17679 0.90287 0.93438 0.89146 1.19462 0.98699 0.91171 1.39494 0.89410 1.25883 0.94882 1.00812 0.92706 1.69716 1.09646 1.28778 1.30760 0.86270 0.80978 0.80210 0.79263 1.19485 1.19815 1.18208 1.17408 1.04356 0.87322 0.89853 1.91332 1.93861 1.66910 1.60368 1.20315 0.99736 0.93330 0.98950 0.91165 0.90181 0.92341 0.85633 0.85708 0.85032 0.88399 0.87706 0.90234 0.87892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 8.56 36.00 0.31 -1.04 16 2 C -0.09 -1.26 5.88 -104.28 -0.61 -1.87 16 3 C -0.07 -0.80 9.38 -39.21 -0.37 -1.17 16 4 C -0.06 -0.78 5.74 -106.78 -0.61 -1.39 16 5 C 0.27 3.56 15.32 -22.47 -0.34 3.22 16 6 N -0.44 -6.68 18.54 41.84 0.78 -5.90 16 7 C -0.07 -0.87 9.69 -39.59 -0.38 -1.25 16 8 C -0.12 -1.71 9.54 -39.62 -0.38 -2.09 16 9 C 0.04 0.70 5.40 -104.81 -0.57 0.13 16 10 C -0.19 -3.45 4.52 -104.66 -0.47 -3.93 16 11 C -0.07 -1.29 8.20 -39.64 -0.33 -1.61 16 12 C -0.20 -4.23 9.73 -39.30 -0.38 -4.62 16 13 C 0.10 2.37 5.38 -106.73 -0.57 1.80 16 14 C -0.46 -11.34 8.88 -37.89 -0.34 -11.68 16 15 H 0.09 2.04 7.93 -52.49 -0.42 1.63 16 16 C 0.08 1.90 4.46 -17.32 -0.08 1.82 16 17 N -0.77 -19.20 11.31 55.55 0.63 -18.57 16 18 Si 0.91 17.94 29.61 -169.99 -5.03 12.91 16 19 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 20 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 21 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 22 C 0.03 0.74 6.64 -39.07 -0.26 0.48 16 23 F -0.15 -3.72 14.41 2.25 0.03 -3.68 16 24 C -0.10 -2.17 9.51 -39.59 -0.38 -2.55 16 25 H 0.07 0.81 7.55 -51.93 -0.39 0.42 16 26 H 0.08 1.13 7.03 -51.93 -0.37 0.76 16 27 H 0.06 0.59 8.05 -51.93 -0.42 0.17 16 28 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 29 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.10 1.59 7.32 -52.49 -0.38 1.21 16 32 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 33 H 0.29 6.57 8.30 -40.82 -0.34 6.23 16 34 H 0.10 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 308.46 15.07 4.65 4.65 Total: -1.00 -26.09 308.46 -7.93 -34.02 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -3.22 Total: 2.32 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -5.76 Total: -25.74 kcal Atomic # 7 Polarization: -25.88 SS G_CDS: 1.40 Total: -24.47 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.03 Total: -3.68 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -26.09 -7.93 -34.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242473184.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.910 kcal (2) G-P(sol) polarization free energy of solvation -26.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds