Wall clock time and date at job start Tue Mar 31 2020 05:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.36615 * 120.00126 * 2 1 4 4 C 1.39823 * 119.99991 * 180.25522 * 3 2 1 5 5 C 1.43202 * 120.00821 * 179.71112 * 4 3 2 6 6 N 4.78893 * 134.65060 * 359.72108 * 2 1 3 7 7 C 1.39872 * 119.99164 * 359.43576 * 4 3 2 8 8 C 1.36584 * 119.99648 * 0.27729 * 7 4 3 9 9 C 1.39806 * 119.99723 * 179.66732 * 2 1 3 10 10 C 1.47726 * 119.99520 * 0.02562 * 9 2 1 11 11 C 1.39132 * 120.32938 * 244.97594 * 10 9 2 12 12 C 1.38368 * 119.95559 * 180.02562 * 11 10 9 13 13 F 1.35094 * 119.69256 * 179.97438 * 12 11 10 14 14 C 1.39237 * 120.62023 * 0.02562 * 12 11 10 15 15 C 1.36347 * 120.66692 * 359.97225 * 14 12 11 16 16 C 1.40806 * 120.02328 * 359.77075 * 15 14 12 17 17 C 1.40756 * 120.30696 * 180.27803 * 16 15 14 18 18 H 1.08003 * 119.99856 * 204.97872 * 17 16 15 19 19 C 1.40106 * 119.99818 * 24.97570 * 17 16 15 20 20 N 1.30760 * 120.00175 * 17.51640 * 19 17 16 21 21 Si 1.86797 * 119.99954 * 197.51364 * 19 17 16 22 22 H 1.48501 * 109.47029 * 90.00002 * 21 19 17 23 23 H 1.48495 * 109.47189 * 210.00077 * 21 19 17 24 24 H 1.48507 * 109.47216 * 330.00287 * 21 19 17 25 25 H 1.09000 * 109.47574 * 270.33212 * 1 2 3 26 26 H 1.09007 * 109.47122 * 30.33295 * 1 2 3 27 27 H 1.09004 * 109.47427 * 150.33249 * 1 2 3 28 28 H 1.08004 * 120.00020 * 359.97438 * 3 2 1 29 29 H 1.08000 * 120.00503 * 180.30004 * 7 4 3 30 30 H 1.07991 * 119.99737 * 180.02562 * 8 7 4 31 31 H 1.07998 * 120.02415 * 359.97438 * 11 10 9 32 32 H 1.07997 * 119.66989 * 179.97438 * 14 12 11 33 33 H 1.08005 * 119.98332 * 180.02562 * 15 14 12 34 34 H 0.96993 * 119.99827 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1900 1.1831 0.0000 4 6 3.5882 1.1831 -0.0054 5 6 4.3044 2.4231 -0.0116 6 7 4.8725 3.4068 -0.0166 7 6 4.2874 -0.0283 0.0011 8 6 3.6043 -1.2110 0.0071 9 6 2.2059 -1.2108 0.0070 10 6 1.4671 -2.4900 0.0139 11 6 1.5552 -3.3464 1.1069 12 6 0.8603 -4.5429 1.1049 13 9 0.9501 -5.3707 2.1688 14 6 0.0702 -4.9024 0.0162 15 6 -0.0343 -4.0824 -1.0681 16 6 0.6566 -2.8558 -1.0930 17 6 0.5483 -2.0020 -2.2068 18 1 1.3373 -1.2978 -2.4261 19 6 -0.5830 -2.0657 -3.0309 20 7 -1.6729 -2.6466 -2.6013 21 14 -0.5343 -1.3209 -4.7432 22 1 -0.0748 -2.3450 -5.7156 23 1 -1.8933 -0.8557 -5.1195 24 1 0.4042 -0.1700 -4.7560 25 1 -0.3634 0.0060 1.0276 26 1 -0.3634 0.8870 -0.5190 27 1 -0.3634 -0.8930 -0.5087 28 1 1.6500 2.1185 -0.0004 29 1 5.3674 -0.0286 0.0019 30 1 4.1441 -2.1463 0.0125 31 1 2.1662 -3.0778 1.9560 32 1 -0.4652 -5.8401 0.0307 33 1 -0.6507 -4.3720 -1.9064 34 1 -2.4562 -2.6903 -3.1717 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242473371.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:30 Heat of formation + Delta-G solvation = 12.439775 kcal Electronic energy + Delta-G solvation = -20687.273234 eV Core-core repulsion = 17463.586884 eV Total energy + Delta-G solvation = -3223.686349 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -47.58549 -39.50536 -37.50720 -36.12411 -33.93860 -32.62039 -31.70879 -29.64160 -28.88460 -26.51745 -25.25529 -23.59161 -21.51936 -21.12146 -20.35391 -17.88336 -17.60395 -16.60552 -15.64422 -15.32360 -14.78522 -14.60653 -14.31761 -14.10172 -13.90889 -13.80680 -12.97042 -12.88960 -12.83555 -12.70717 -12.50322 -12.20243 -12.15741 -11.70470 -11.42719 -11.27329 -11.26530 -11.12874 -10.77939 -10.66230 -10.41769 -10.15746 -9.69611 -9.33690 -8.55072 -8.26053 -7.70200 -7.46492 -7.08127 -4.63091 1.09476 1.81276 2.41556 2.59271 2.85914 2.93411 2.96788 2.98964 3.27454 3.71415 4.17768 4.22292 4.29368 5.15568 5.18476 5.34120 5.39747 5.66376 5.79203 5.88636 5.94518 6.01911 6.16384 6.31702 6.41496 6.42160 6.63750 6.66620 6.71751 6.83131 6.93201 7.02643 7.18035 7.20619 7.35392 7.48388 7.64880 7.68880 7.73394 7.91639 8.27289 8.51319 8.58907 9.82128 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.011960 B = 0.007550 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.660900 B = 3707.777574 C = 5523.087142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.063 4.063 3 C -0.074 4.074 4 C -0.063 4.063 5 C 0.270 3.730 6 N -0.448 5.448 7 C -0.076 4.076 8 C -0.125 4.125 9 C 0.055 3.945 10 C -0.180 4.180 11 C -0.090 4.090 12 C -0.047 4.047 13 F -0.173 7.173 14 C -0.122 4.122 15 C -0.138 4.138 16 C 0.124 3.876 17 C -0.436 4.436 18 H 0.087 0.913 19 C 0.078 3.922 20 N -0.777 5.777 21 Si 0.905 3.095 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.258 1.258 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.115 0.885 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.128 0.872 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.129 0.871 34 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.993 1.184 0.723 2.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.063 4.063 3 C -0.094 4.094 4 C -0.066 4.066 5 C -0.044 4.044 6 N -0.124 5.124 7 C -0.096 4.096 8 C -0.143 4.143 9 C 0.054 3.946 10 C -0.182 4.182 11 C -0.109 4.109 12 C -0.067 4.067 13 F -0.153 7.153 14 C -0.141 4.141 15 C -0.157 4.157 16 C 0.121 3.879 17 C -0.464 4.464 18 H 0.105 0.895 19 C -0.143 4.143 20 N -0.400 5.400 21 Si 0.729 3.271 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.181 1.181 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.133 0.867 28 H 0.141 0.859 29 H 0.140 0.860 30 H 0.146 0.854 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.146 0.854 34 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.613 2.651 0.680 3.784 hybrid contribution -0.284 -0.209 -0.584 0.682 sum 2.329 2.441 0.096 3.375 Atomic orbital electron populations 1.21102 0.90214 1.05417 1.01630 1.19764 0.97035 0.91287 0.98246 1.20677 0.91523 0.98426 0.98804 1.15970 0.92250 0.86575 1.11851 1.25913 0.92907 0.92866 0.92689 1.81180 1.09303 1.11221 1.10739 1.20676 0.99372 0.90876 0.98704 1.21029 0.93779 0.97584 1.01885 1.18901 0.91878 0.92701 0.91098 1.18226 1.09230 0.94636 0.96066 1.20482 0.99544 0.92979 0.97935 1.17157 1.09632 0.92530 0.87360 1.91294 1.96175 1.71993 1.55802 1.20515 0.99496 0.99976 0.94136 1.20965 1.03045 0.93656 0.98007 1.17490 0.88676 0.91225 0.90494 1.19570 1.03294 1.16886 1.06670 0.89529 1.25985 0.94512 0.93869 0.99956 1.69749 1.01654 1.31983 1.36650 0.86316 0.78857 0.80465 0.81478 1.18984 1.20039 1.18130 0.92423 0.92826 0.86654 0.85885 0.85957 0.85395 0.87841 0.88128 0.85364 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 9.25 36.00 0.33 -1.88 16 2 C -0.06 -1.07 5.27 -104.63 -0.55 -1.63 16 3 C -0.07 -1.11 9.34 -39.58 -0.37 -1.48 16 4 C -0.06 -0.92 5.74 -106.77 -0.61 -1.53 16 5 C 0.27 4.10 15.32 -22.47 -0.34 3.75 16 6 N -0.45 -7.46 18.54 41.84 0.78 -6.69 16 7 C -0.08 -1.05 9.70 -39.57 -0.38 -1.44 16 8 C -0.12 -1.94 9.68 -39.58 -0.38 -2.32 16 9 C 0.06 0.99 4.39 -104.84 -0.46 0.53 16 10 C -0.18 -3.65 4.65 -104.26 -0.48 -4.14 16 11 C -0.09 -1.83 9.70 -39.20 -0.38 -2.21 16 12 C -0.05 -1.00 7.31 -39.16 -0.29 -1.29 16 13 F -0.17 -3.64 17.26 2.25 0.04 -3.60 16 14 C -0.12 -2.60 9.94 -39.89 -0.40 -2.99 16 15 C -0.14 -3.06 8.63 -39.29 -0.34 -3.40 16 16 C 0.12 2.73 4.53 -106.54 -0.48 2.24 16 17 C -0.44 -9.45 6.13 -37.93 -0.23 -9.68 16 18 H 0.09 1.88 7.06 -52.48 -0.37 1.51 16 19 C 0.08 1.63 5.14 -17.31 -0.09 1.54 16 20 N -0.78 -16.79 10.96 55.56 0.61 -16.18 16 21 Si 0.90 16.33 29.60 -169.99 -5.03 11.29 16 22 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 23 H -0.28 -4.92 7.11 56.52 0.40 -4.52 16 24 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.83 8.08 -51.92 -0.42 0.41 16 27 H 0.12 2.36 4.29 -51.93 -0.22 2.14 16 28 H 0.12 1.62 8.06 -52.48 -0.42 1.20 16 29 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.13 1.84 8.06 -52.49 -0.42 1.41 16 31 H 0.10 1.91 8.06 -52.49 -0.42 1.48 16 32 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 33 H 0.13 2.91 6.17 -52.48 -0.32 2.59 16 34 H 0.29 5.69 8.29 -40.82 -0.34 5.35 16 LS Contribution 304.71 15.07 4.59 4.59 Total: -1.00 -23.13 304.71 -7.49 -30.61 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -3.01 Total: 5.89 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -5.46 Total: -25.92 kcal Atomic # 7 Polarization: -24.25 SS G_CDS: 1.38 Total: -22.86 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.04 Total: -3.60 kcal Atomic # 14 Polarization: 16.33 SS G_CDS: -5.03 Total: 11.29 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -23.13 -7.49 -30.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242473371.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.053 kcal (2) G-P(sol) polarization free energy of solvation -23.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds