Wall clock time and date at job start Tue Mar 31 2020 05:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37676 * 119.98568 * 2 1 4 4 C 1.39733 * 119.96890 * 180.27501 * 3 2 1 5 5 C 1.43204 * 120.03218 * 179.76863 * 4 3 2 6 6 N 4.79872 * 134.63077 * 359.74921 * 2 1 3 7 7 C 1.39777 * 119.93698 * 359.48443 * 4 3 2 8 8 C 1.37636 * 119.96724 * 0.25611 * 7 4 3 9 9 C 1.39479 * 119.98331 * 179.76174 * 2 1 3 10 10 C 1.48300 * 119.96889 * 0.02562 * 9 2 1 11 11 C 1.39752 * 119.99112 * 309.69736 * 10 9 2 12 12 C 1.38608 * 120.34224 * 179.76198 * 11 10 9 13 13 F 1.35098 * 119.83090 * 180.28660 * 12 11 10 14 14 C 1.37949 * 120.33493 * 0.51973 * 12 11 10 15 15 C 1.40711 * 119.98165 * 359.74568 * 14 12 11 16 16 C 1.41426 * 120.17611 * 180.02562 * 15 14 12 17 17 H 1.08004 * 120.00388 * 204.51415 * 16 15 14 18 18 C 1.39925 * 119.99981 * 24.50717 * 16 15 14 19 19 N 1.30833 * 120.00005 * 17.91666 * 18 16 15 20 20 Si 1.86808 * 120.00146 * 197.92326 * 18 16 15 21 21 H 1.48491 * 109.47237 * 89.99594 * 20 18 16 22 22 H 1.48497 * 109.46752 * 210.00093 * 20 18 16 23 23 H 1.48504 * 109.46621 * 329.99332 * 20 18 16 24 24 C 1.38803 * 119.99229 * 129.97925 * 10 9 2 25 25 H 1.09000 * 109.47196 * 270.23349 * 1 2 3 26 26 H 1.08994 * 109.47090 * 30.23793 * 1 2 3 27 27 H 1.09002 * 109.46993 * 150.23525 * 1 2 3 28 28 H 1.08003 * 120.01831 * 0.03674 * 3 2 1 29 29 H 1.08005 * 120.01296 * 180.27695 * 7 4 3 30 30 H 1.08001 * 119.98472 * 179.97438 * 8 7 4 31 31 H 1.07994 * 119.82945 * 0.03281 * 11 10 9 32 32 H 1.07998 * 120.00746 * 179.76305 * 14 12 11 33 33 H 0.97002 * 119.99964 * 179.97438 * 19 18 16 34 34 H 1.07998 * 120.16652 * 359.95387 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1951 1.1925 0.0000 4 6 3.5924 1.1921 -0.0058 5 6 4.3095 2.4317 -0.0108 6 7 4.8783 3.4150 -0.0149 7 6 4.2896 -0.0194 -0.0007 8 6 3.5992 -1.2100 0.0047 9 6 2.2041 -1.2081 0.0050 10 6 1.4615 -2.4918 0.0098 11 6 0.4421 -2.7057 0.9416 12 6 -0.2599 -3.9008 0.9493 13 9 -1.2473 -4.0944 1.8509 14 6 0.0477 -4.8955 0.0443 15 6 1.0752 -4.6970 -0.8964 16 6 1.3936 -5.7137 -1.8264 17 1 2.3799 -5.7554 -2.2644 18 6 0.4307 -6.6657 -2.1792 19 7 -0.8352 -6.4344 -1.9431 20 14 0.9527 -8.2672 -2.9871 21 1 1.2174 -9.2864 -1.9402 22 1 -0.1313 -8.7464 -3.8819 23 1 2.1868 -8.0414 -3.7816 24 6 1.7830 -3.4828 -0.9074 25 1 -0.3633 0.0042 1.0276 26 1 -0.3633 0.8878 -0.5175 27 1 -0.3633 -0.8921 -0.5102 28 1 1.6551 2.1279 0.0006 29 1 5.3697 -0.0211 -0.0007 30 1 4.1376 -2.1462 0.0082 31 1 0.1972 -1.9342 1.6564 32 1 -0.5002 -5.8261 0.0576 33 1 -1.5027 -7.0942 -2.1880 34 1 2.5729 -3.3215 -1.6260 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242475163.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:17 Heat of formation + Delta-G solvation = 8.594996 kcal Electronic energy + Delta-G solvation = -20041.286260 eV Core-core repulsion = 16817.433188 eV Total energy + Delta-G solvation = -3223.853072 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -47.75775 -39.69201 -37.48668 -36.36311 -34.09261 -32.75761 -31.72691 -29.79732 -28.56878 -26.82593 -25.55958 -23.84916 -21.81796 -20.82311 -20.67762 -18.19355 -17.74374 -16.11467 -15.68688 -15.20516 -14.98657 -14.81106 -14.48252 -14.40713 -14.17028 -14.05527 -13.26967 -13.15778 -13.02218 -12.91475 -12.78984 -12.28955 -11.97491 -11.73559 -11.67701 -11.46450 -11.27414 -11.15059 -10.89169 -10.77690 -10.53855 -10.13644 -9.80472 -9.35220 -8.83144 -8.59705 -7.65361 -7.39522 -6.96757 -4.62831 0.77485 1.44154 2.46620 2.53310 2.64681 2.96511 2.99659 3.00552 3.12834 3.77994 3.91073 3.94618 4.34589 4.89887 4.92726 5.02490 5.28399 5.33027 5.50738 5.63485 5.73913 5.87042 5.95556 6.00393 6.18050 6.32052 6.34147 6.43026 6.47506 6.66914 6.73659 6.84005 6.95913 7.01561 7.30571 7.46840 7.49715 7.56293 7.73052 7.99882 8.34899 8.61640 8.63324 9.96166 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.022031 B = 0.004265 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.634422 B = 6563.243556 C = 7448.799993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.079 4.079 3 C -0.071 4.071 4 C -0.050 4.050 5 C 0.266 3.734 6 N -0.437 5.437 7 C -0.074 4.074 8 C -0.110 4.110 9 C 0.018 3.982 10 C -0.022 4.022 11 C -0.255 4.255 12 C 0.105 3.895 13 F -0.166 7.166 14 C -0.194 4.194 15 C 0.126 3.874 16 C -0.455 4.455 17 H 0.085 0.915 18 C 0.075 3.925 19 N -0.784 5.784 20 Si 0.912 3.088 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.260 1.260 24 C -0.204 4.204 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.084 0.916 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.136 0.864 31 H 0.105 0.895 32 H 0.130 0.870 33 H 0.285 0.715 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.879 5.378 1.784 6.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.079 4.079 3 C -0.091 4.091 4 C -0.053 4.053 5 C -0.049 4.049 6 N -0.113 5.113 7 C -0.095 4.095 8 C -0.128 4.128 9 C 0.017 3.983 10 C -0.022 4.022 11 C -0.275 4.275 12 C 0.086 3.914 13 F -0.145 7.145 14 C -0.214 4.214 15 C 0.123 3.877 16 C -0.483 4.483 17 H 0.103 0.897 18 C -0.144 4.144 19 N -0.408 5.408 20 Si 0.736 3.264 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.184 1.184 24 C -0.224 4.224 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.146 0.854 29 H 0.147 0.853 30 H 0.154 0.846 31 H 0.123 0.877 32 H 0.147 0.853 33 H 0.096 0.904 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.479 6.804 1.759 7.842 hybrid contribution -0.291 -1.146 -0.238 1.206 sum 3.188 5.658 1.522 6.671 Atomic orbital electron populations 1.20922 0.90296 1.03406 1.02614 1.19899 0.96728 0.91473 0.99783 1.20895 0.91623 0.98203 0.98419 1.15957 0.92208 0.86761 1.10415 1.25829 0.93140 0.92869 0.93053 1.81214 1.08953 1.11097 1.10034 1.21015 0.99779 0.90639 0.98057 1.21223 0.93342 0.98003 1.00224 1.19232 0.92786 0.92830 0.93454 1.17994 0.95765 0.91602 0.96843 1.20252 1.03226 0.98061 1.05974 1.17547 0.88094 0.95905 0.89841 1.91348 1.60604 1.95812 1.66699 1.21391 1.04043 0.99234 0.96709 1.17277 0.89466 0.90802 0.90110 1.19622 0.99163 1.08435 1.21104 0.89724 1.25978 0.94249 0.99699 0.94507 1.69802 1.01323 1.34185 1.35461 0.86242 0.79613 0.81053 0.79519 1.19071 1.20155 1.18391 1.21107 1.05589 0.93496 1.02198 0.91019 0.92099 0.89730 0.85389 0.85328 0.84565 0.87710 0.85252 0.90391 0.87852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.53 8.44 36.01 0.30 -1.23 16 2 C -0.08 -1.10 5.86 -104.36 -0.61 -1.71 16 3 C -0.07 -0.86 9.39 -39.23 -0.37 -1.22 16 4 C -0.05 -0.61 5.74 -106.84 -0.61 -1.22 16 5 C 0.27 3.45 15.32 -22.47 -0.34 3.10 16 6 N -0.44 -6.45 18.54 41.84 0.78 -5.68 16 7 C -0.07 -0.87 9.74 -39.23 -0.38 -1.26 16 8 C -0.11 -1.49 9.47 -39.33 -0.37 -1.86 16 9 C 0.02 0.28 5.47 -104.82 -0.57 -0.29 16 10 C -0.02 -0.42 4.69 -104.98 -0.49 -0.91 16 11 C -0.26 -5.10 7.88 -38.88 -0.31 -5.41 16 12 C 0.11 2.36 7.28 -39.55 -0.29 2.07 16 13 F -0.17 -3.65 17.26 2.25 0.04 -3.61 16 14 C -0.19 -4.68 8.67 -38.75 -0.34 -5.02 16 15 C 0.13 3.01 5.57 -106.88 -0.60 2.42 16 16 C -0.45 -10.86 9.05 -37.74 -0.34 -11.20 16 17 H 0.08 1.92 7.91 -52.48 -0.42 1.50 16 18 C 0.08 1.73 5.13 -17.35 -0.09 1.64 16 19 N -0.78 -18.82 10.96 55.55 0.61 -18.21 16 20 Si 0.91 17.18 29.60 -169.99 -5.03 12.15 16 21 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 22 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.26 -4.83 7.11 56.52 0.40 -4.42 16 24 C -0.20 -4.32 9.23 -38.50 -0.36 -4.67 16 25 H 0.07 0.89 7.49 -51.93 -0.39 0.50 16 26 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 27 H 0.08 1.33 6.45 -51.93 -0.33 0.99 16 28 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 29 H 0.13 1.22 8.06 -52.48 -0.42 0.79 16 30 H 0.14 1.74 8.03 -52.49 -0.42 1.32 16 31 H 0.10 1.90 6.84 -52.49 -0.36 1.54 16 32 H 0.13 3.30 6.15 -52.49 -0.32 2.98 16 33 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 34 H 0.10 2.03 8.03 -52.49 -0.42 1.61 16 LS Contribution 307.99 15.07 4.64 4.64 Total: -1.00 -25.19 307.99 -7.79 -32.99 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -3.06 Total: 4.48 kcal Atomic # 6 Polarization: -20.99 SS G_CDS: -5.77 Total: -26.76 kcal Atomic # 7 Polarization: -25.27 SS G_CDS: 1.38 Total: -23.89 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.04 Total: -3.61 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.15 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -25.19 -7.79 -32.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242475163.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.582 kcal (2) G-P(sol) polarization free energy of solvation -25.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds