Wall clock time and date at job start Tue Mar 31 2020 05:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37676 * 119.98568 * 2 1 4 4 C 1.39733 * 119.96890 * 180.27501 * 3 2 1 5 5 C 1.43204 * 120.03218 * 179.76863 * 4 3 2 6 6 N 4.79872 * 134.63077 * 359.74921 * 2 1 3 7 7 C 1.39777 * 119.93698 * 359.48443 * 4 3 2 8 8 C 1.37636 * 119.96724 * 0.25611 * 7 4 3 9 9 C 1.39479 * 119.98331 * 179.76174 * 2 1 3 10 10 C 1.48300 * 119.96889 * 0.02562 * 9 2 1 11 11 C 1.39752 * 119.99112 * 309.69736 * 10 9 2 12 12 C 1.38608 * 120.34224 * 179.76198 * 11 10 9 13 13 F 1.35098 * 119.83090 * 180.28660 * 12 11 10 14 14 C 1.37949 * 120.33493 * 0.51973 * 12 11 10 15 15 C 1.40711 * 119.98165 * 359.74568 * 14 12 11 16 16 C 1.41426 * 120.17611 * 180.02562 * 15 14 12 17 17 H 1.08004 * 120.00388 * 204.51415 * 16 15 14 18 18 C 1.39925 * 119.99981 * 24.50717 * 16 15 14 19 19 N 1.30833 * 120.00005 * 17.91666 * 18 16 15 20 20 Si 1.86808 * 120.00146 * 197.92326 * 18 16 15 21 21 H 1.48491 * 109.47237 * 89.99594 * 20 18 16 22 22 H 1.48497 * 109.46752 * 210.00093 * 20 18 16 23 23 H 1.48504 * 109.46621 * 329.99332 * 20 18 16 24 24 C 1.38803 * 119.99229 * 129.97925 * 10 9 2 25 25 H 1.09000 * 109.47196 * 270.23349 * 1 2 3 26 26 H 1.08994 * 109.47090 * 30.23793 * 1 2 3 27 27 H 1.09002 * 109.46993 * 150.23525 * 1 2 3 28 28 H 1.08003 * 120.01831 * 0.03674 * 3 2 1 29 29 H 1.08005 * 120.01296 * 180.27695 * 7 4 3 30 30 H 1.08001 * 119.98472 * 179.97438 * 8 7 4 31 31 H 1.07994 * 119.82945 * 0.03281 * 11 10 9 32 32 H 1.07998 * 120.00746 * 179.76305 * 14 12 11 33 33 H 0.97002 * 119.99964 * 179.97438 * 19 18 16 34 34 H 1.07998 * 120.16652 * 359.95387 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1951 1.1925 0.0000 4 6 3.5924 1.1921 -0.0058 5 6 4.3095 2.4317 -0.0108 6 7 4.8783 3.4150 -0.0149 7 6 4.2896 -0.0194 -0.0007 8 6 3.5992 -1.2100 0.0047 9 6 2.2041 -1.2081 0.0050 10 6 1.4615 -2.4918 0.0098 11 6 0.4421 -2.7057 0.9416 12 6 -0.2599 -3.9008 0.9493 13 9 -1.2473 -4.0944 1.8509 14 6 0.0477 -4.8955 0.0443 15 6 1.0752 -4.6970 -0.8964 16 6 1.3936 -5.7137 -1.8264 17 1 2.3799 -5.7554 -2.2644 18 6 0.4307 -6.6657 -2.1792 19 7 -0.8352 -6.4344 -1.9431 20 14 0.9527 -8.2672 -2.9871 21 1 1.2174 -9.2864 -1.9402 22 1 -0.1313 -8.7464 -3.8819 23 1 2.1868 -8.0414 -3.7816 24 6 1.7830 -3.4828 -0.9074 25 1 -0.3633 0.0042 1.0276 26 1 -0.3633 0.8878 -0.5175 27 1 -0.3633 -0.8921 -0.5102 28 1 1.6551 2.1279 0.0006 29 1 5.3697 -0.0211 -0.0007 30 1 4.1376 -2.1462 0.0082 31 1 0.1972 -1.9342 1.6564 32 1 -0.5002 -5.8261 0.0576 33 1 -1.5027 -7.0942 -2.1880 34 1 2.5729 -3.3215 -1.6260 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242475163.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:16 Heat of formation + Delta-G solvation = -0.401760 kcal Electronic energy + Delta-G solvation = -20041.676388 eV Core-core repulsion = 16817.433188 eV Total energy + Delta-G solvation = -3224.243200 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.53711 -40.84101 -39.00976 -37.52851 -35.69969 -33.91692 -32.98845 -31.49772 -30.00480 -27.94374 -27.25049 -25.11732 -23.04456 -22.31115 -22.24418 -19.44724 -19.14613 -17.79974 -16.98147 -16.72326 -16.55808 -16.34603 -16.12447 -15.96908 -15.22025 -15.14458 -14.70122 -14.26659 -14.18229 -14.06115 -13.98899 -13.88099 -13.40273 -13.09188 -12.99139 -12.86186 -12.71516 -12.54209 -12.30264 -12.12943 -11.96966 -11.77963 -11.42529 -11.04019 -10.00434 -9.69664 -9.37166 -8.98164 -8.67231 -6.42986 -0.33309 0.44447 0.81873 0.90418 1.41626 1.50770 1.54700 1.61775 1.97211 2.20216 2.62489 2.86201 2.93275 3.55372 3.63501 3.93257 3.98593 4.06416 4.27531 4.48539 4.51827 4.66830 4.74687 4.85755 4.90903 4.99581 5.03054 5.07283 5.25263 5.26723 5.33911 5.42063 5.56099 5.70919 5.75741 5.89511 5.92150 5.98491 6.26704 6.44702 6.58500 6.85830 6.87939 8.27526 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.022031 B = 0.004265 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.634422 B = 6563.243556 C = 7448.799993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.081 4.081 3 C -0.061 4.061 4 C -0.041 4.041 5 C 0.286 3.714 6 N -0.465 5.465 7 C -0.063 4.063 8 C -0.110 4.110 9 C -0.011 4.011 10 C -0.005 4.005 11 C -0.246 4.246 12 C 0.093 3.907 13 F -0.167 7.167 14 C -0.224 4.224 15 C 0.103 3.897 16 C -0.487 4.487 17 H 0.089 0.911 18 C 0.036 3.964 19 N -0.820 5.820 20 Si 0.982 3.018 21 H -0.264 1.264 22 H -0.271 1.271 23 H -0.252 1.252 24 C -0.212 4.212 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.054 0.946 28 H 0.154 0.846 29 H 0.156 0.844 30 H 0.141 0.859 31 H 0.127 0.873 32 H 0.106 0.894 33 H 0.290 0.710 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.294 7.092 1.691 8.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.081 4.081 3 C -0.081 4.081 4 C -0.045 4.045 5 C -0.028 4.028 6 N -0.141 5.141 7 C -0.083 4.083 8 C -0.127 4.127 9 C -0.012 4.012 10 C -0.005 4.005 11 C -0.266 4.266 12 C 0.074 3.926 13 F -0.146 7.146 14 C -0.245 4.245 15 C 0.101 3.899 16 C -0.516 4.516 17 H 0.107 0.893 18 C -0.181 4.181 19 N -0.445 5.445 20 Si 0.803 3.197 21 H -0.189 1.189 22 H -0.196 1.196 23 H -0.176 1.176 24 C -0.231 4.231 25 H 0.097 0.903 26 H 0.105 0.895 27 H 0.073 0.927 28 H 0.172 0.828 29 H 0.174 0.826 30 H 0.159 0.841 31 H 0.145 0.855 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.897 8.532 1.674 9.979 hybrid contribution -0.694 -1.478 -0.141 1.639 sum 4.202 7.054 1.533 8.353 Atomic orbital electron populations 1.20915 0.90078 1.03189 1.03069 1.19937 0.96971 0.91399 0.99776 1.21076 0.91624 0.98471 0.96949 1.16015 0.92292 0.86525 1.09656 1.25750 0.92400 0.92468 0.92160 1.81259 1.09897 1.12011 1.10963 1.21224 1.01106 0.89581 0.96376 1.21277 0.92461 0.99078 0.99930 1.19136 0.93662 0.91690 0.96722 1.18239 0.94737 0.92608 0.94909 1.20513 1.02673 0.97277 1.06136 1.17764 0.88512 0.96593 0.89767 1.91332 1.60734 1.95918 1.66609 1.21276 1.05376 0.99266 0.98554 1.17586 0.89968 0.92088 0.90283 1.19909 0.99753 1.09809 1.22094 0.89286 1.26811 0.93942 1.02542 0.94765 1.69873 1.02415 1.35445 1.36781 0.85189 0.79393 0.76631 0.78510 1.18910 1.19596 1.17585 1.21288 1.05664 0.93232 1.02958 0.90253 0.89525 0.92737 0.82807 0.82612 0.84104 0.85535 0.87567 0.89948 0.86721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.81 8.44 71.24 0.60 -2.21 16 2 C -0.08 -2.02 5.86 -19.70 -0.12 -2.14 16 3 C -0.06 -1.23 9.39 22.50 0.21 -1.02 16 4 C -0.04 -0.84 5.74 -21.30 -0.12 -0.97 16 5 C 0.29 6.42 15.32 88.33 1.35 7.77 16 6 N -0.47 -12.41 18.54 19.01 0.35 -12.05 16 7 C -0.06 -1.24 9.74 22.50 0.22 -1.02 16 8 C -0.11 -2.68 9.47 22.43 0.21 -2.47 16 9 C -0.01 -0.33 5.47 -19.99 -0.11 -0.44 16 10 C 0.00 -0.18 4.69 -20.10 -0.09 -0.27 16 11 C -0.25 -9.79 7.88 22.72 0.18 -9.61 16 12 C 0.09 4.28 7.28 22.29 0.16 4.44 16 13 F -0.17 -7.53 17.26 44.97 0.78 -6.75 16 14 C -0.22 -11.41 8.67 22.81 0.20 -11.22 16 15 C 0.10 5.12 5.57 -21.33 -0.12 5.00 16 16 C -0.49 -24.07 9.05 23.46 0.21 -23.85 16 17 H 0.09 4.14 7.91 -2.91 -0.02 4.11 16 18 C 0.04 1.68 5.13 85.25 0.44 2.12 16 19 N -0.82 -41.14 10.96 21.82 0.24 -40.90 16 20 Si 0.98 35.78 29.60 68.60 2.03 37.81 16 21 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 22 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 23 H -0.25 -8.78 7.11 99.48 0.71 -8.08 16 24 C -0.21 -9.06 9.23 22.97 0.21 -8.85 16 25 H 0.08 1.78 7.49 -2.39 -0.02 1.77 16 26 H 0.09 1.62 8.08 -2.39 -0.02 1.61 16 27 H 0.05 1.66 6.45 -2.39 -0.02 1.64 16 28 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 29 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 30 H 0.14 3.29 8.03 -2.91 -0.02 3.27 16 31 H 0.13 4.42 6.84 -2.91 -0.02 4.40 16 32 H 0.11 5.80 6.15 -2.91 -0.02 5.79 16 33 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 34 H 0.11 4.52 8.03 -2.91 -0.02 4.50 16 Total: -1.00 -56.22 307.99 7.98 -48.24 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 1.14 Total: 18.39 kcal Atomic # 6 Polarization: -48.16 SS G_CDS: 3.44 Total: -44.72 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 0.59 Total: -52.96 kcal Atomic # 9 Polarization: -7.53 SS G_CDS: 0.78 Total: -6.75 kcal Atomic # 14 Polarization: 35.78 SS G_CDS: 2.03 Total: 37.81 kcal Total: -56.22 7.98 -48.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242475163.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.838 kcal (2) G-P(sol) polarization free energy of solvation -56.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds