Wall clock time and date at job start Tue Mar 31 2020 05:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38052 * 119.85671 * 2 1 4 4 C 1.39676 * 120.08925 * 180.02562 * 3 2 1 5 5 C 1.43198 * 120.09073 * 180.02562 * 4 3 2 6 6 N 4.80329 * 134.43029 * 0.02562 * 2 1 3 7 7 C 1.39462 * 119.81710 * 359.71954 * 4 3 2 8 8 C 1.39060 * 119.71808 * 0.55435 * 7 4 3 9 9 C 1.48402 * 120.04520 * 179.72781 * 8 7 4 10 10 C 1.39573 * 120.01999 * 129.72355 * 9 8 7 11 11 C 1.38465 * 120.42355 * 179.73987 * 10 9 8 12 12 C 1.37655 * 120.45469 * 0.22927 * 11 10 9 13 13 C 1.40747 * 120.01587 * 0.04869 * 12 11 10 14 14 C 1.41314 * 120.21013 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00439 * 204.63151 * 14 13 12 16 16 C 1.39934 * 120.00241 * 24.63408 * 14 13 12 17 17 N 1.30853 * 119.99628 * 17.80020 * 16 14 13 18 18 Si 1.86795 * 120.00300 * 197.80714 * 16 14 13 19 19 H 1.48500 * 109.47233 * 59.99496 * 18 16 14 20 20 H 1.48498 * 109.47167 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46942 * 299.99544 * 18 16 14 22 22 C 1.39061 * 120.01157 * 309.99143 * 9 8 7 23 23 F 1.35101 * 120.22534 * 0.02562 * 22 9 8 24 24 C 1.38117 * 119.86333 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.47206 * 269.98320 * 1 2 3 26 26 H 1.09000 * 109.47231 * 29.98133 * 1 2 3 27 27 H 1.09005 * 109.46779 * 149.98047 * 1 2 3 28 28 H 1.08003 * 119.95512 * 359.97438 * 3 2 1 29 29 H 1.07999 * 120.14229 * 180.30110 * 7 4 3 30 30 H 1.08003 * 119.78739 * 0.02562 * 10 9 8 31 31 H 1.08000 * 119.77407 * 180.25251 * 11 10 9 32 32 H 1.07996 * 119.99458 * 180.02562 * 12 11 10 33 33 H 0.96998 * 120.00032 * 180.02562 * 17 16 14 34 34 H 1.08006 * 119.90329 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1973 0.0000 4 6 3.5910 1.2030 -0.0005 5 6 4.3039 2.4449 0.0000 6 7 4.8695 3.4300 0.0015 7 6 4.2894 -0.0042 0.0048 8 6 3.5893 -1.2057 -0.0010 9 6 4.3251 -2.4944 -0.0014 10 6 3.9970 -3.4862 0.9243 11 6 4.6744 -4.6938 0.9279 12 6 5.6834 -4.9304 0.0219 13 6 6.0337 -3.9413 -0.9162 14 6 7.0692 -4.1797 -1.8478 15 1 7.6067 -3.3496 -2.2819 16 6 7.3982 -5.4912 -2.2079 17 7 6.5556 -6.4647 -1.9741 18 14 9.0401 -5.8524 -3.0222 19 1 10.1428 -5.4417 -2.1163 20 1 9.1449 -7.3072 -3.3010 21 1 9.1379 -5.0954 -4.2960 22 6 5.3456 -2.7124 -0.9206 23 9 5.6715 -1.7538 -1.8150 24 6 2.1947 -1.1978 -0.0005 25 1 -0.3634 -0.0003 1.0277 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3633 -0.8899 -0.5142 28 1 1.6512 2.1308 -0.0004 29 1 5.3694 -0.0059 0.0094 30 1 3.2065 -3.3123 1.6394 31 1 4.4092 -5.4554 1.6462 32 1 6.2066 -5.8751 0.0310 33 1 6.7838 -7.3740 -2.2234 34 1 1.6509 -2.1309 -0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242477605.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:18 Heat of formation + Delta-G solvation = 9.817853 kcal Electronic energy + Delta-G solvation = -20166.885390 eV Core-core repulsion = 16943.085345 eV Total energy + Delta-G solvation = -3223.800045 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.36988 -39.50315 -37.36619 -36.35471 -34.14465 -32.86580 -31.79510 -29.75586 -28.28174 -26.91818 -25.45834 -23.80818 -22.41983 -20.92251 -20.08298 -18.18303 -16.97030 -16.21701 -16.03845 -15.69497 -15.24783 -14.70244 -14.37588 -14.07910 -14.02198 -13.48747 -13.36319 -12.99217 -12.92825 -12.88871 -12.83626 -12.17082 -12.00524 -11.85452 -11.72711 -11.48773 -11.28707 -11.12373 -11.04807 -10.83650 -10.55792 -9.96621 -9.71556 -9.34284 -8.80647 -8.61869 -7.61632 -7.35492 -6.93850 -4.53916 0.91340 1.35203 2.53424 2.57015 2.74451 2.99313 3.02000 3.06154 3.15400 3.82058 3.96553 4.00074 4.41206 4.84435 4.90082 5.14974 5.32331 5.36122 5.42601 5.54753 5.57498 5.73839 5.80402 5.94703 6.11595 6.13630 6.36991 6.43087 6.49373 6.64546 6.72362 6.93041 7.00846 7.04538 7.34330 7.44217 7.55405 7.76755 7.83287 7.93925 8.38598 8.60362 8.68193 9.99296 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.021398 B = 0.004620 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.232754 B = 6058.850552 C = 6913.163887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.092 4.092 3 C -0.085 4.085 4 C -0.032 4.032 5 C 0.265 3.735 6 N -0.432 5.432 7 C -0.060 4.060 8 C -0.010 4.010 9 C -0.071 4.071 10 C -0.199 4.199 11 C -0.111 4.111 12 C -0.139 4.139 13 C 0.085 3.915 14 C -0.453 4.453 15 H 0.083 0.917 16 C 0.077 3.923 17 N -0.787 5.787 18 Si 0.913 3.087 19 H -0.262 1.262 20 H -0.276 1.276 21 H -0.263 1.263 22 C -0.009 4.009 23 F -0.157 7.157 24 C -0.079 4.079 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.127 0.873 29 H 0.132 0.868 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.127 0.873 33 H 0.285 0.715 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.433 4.390 3.652 10.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.092 4.092 3 C -0.105 4.105 4 C -0.035 4.035 5 C -0.050 4.050 6 N -0.107 5.107 7 C -0.080 4.080 8 C -0.010 4.010 9 C -0.072 4.072 10 C -0.219 4.219 11 C -0.130 4.130 12 C -0.159 4.159 13 C 0.082 3.918 14 C -0.481 4.481 15 H 0.102 0.898 16 C -0.142 4.142 17 N -0.412 5.412 18 Si 0.737 3.263 19 H -0.186 1.186 20 H -0.201 1.201 21 H -0.188 1.188 22 C -0.029 4.029 23 F -0.136 7.136 24 C -0.098 4.098 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.145 0.855 29 H 0.150 0.850 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.144 0.856 33 H 0.096 0.904 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.575 5.698 3.566 10.127 hybrid contribution 0.595 -0.564 -0.597 1.014 sum -6.980 5.135 2.969 9.159 Atomic orbital electron populations 1.20771 0.90671 1.02946 1.02399 1.19681 0.96202 0.92396 1.00907 1.20902 0.91602 0.98173 0.99836 1.15861 0.92247 0.86651 1.08760 1.25757 0.93194 0.92804 0.93218 1.81199 1.08524 1.11380 1.09587 1.21327 1.00419 0.89928 0.96376 1.18810 0.92764 0.92572 0.96874 1.18199 0.97374 0.92963 0.98697 1.20218 1.04859 0.94365 1.02444 1.20661 0.97440 0.95851 0.99019 1.21273 0.99300 1.00570 0.94758 1.17553 0.91978 0.89460 0.92832 1.19499 1.14664 0.93014 1.20967 0.89849 1.25910 0.98070 0.95716 0.94476 1.69794 1.33660 1.01856 1.35882 0.86272 0.81804 0.77940 0.80305 1.18600 1.20131 1.18777 1.17801 1.00630 0.89949 0.94528 1.91288 1.92359 1.62797 1.67143 1.21390 0.93251 0.97834 0.97298 0.91097 0.91560 0.91208 0.85536 0.84970 0.88162 0.88403 0.85562 0.90420 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.00 36.01 0.36 -0.59 16 2 C -0.09 -1.09 5.87 -104.73 -0.61 -1.71 16 3 C -0.08 -1.02 9.39 -39.11 -0.37 -1.38 16 4 C -0.03 -0.45 5.73 -106.98 -0.61 -1.07 16 5 C 0.27 4.01 15.32 -22.47 -0.34 3.66 16 6 N -0.43 -7.18 18.54 41.84 0.78 -6.41 16 7 C -0.06 -0.98 8.56 -38.82 -0.33 -1.32 16 8 C -0.01 -0.17 5.31 -104.95 -0.56 -0.73 16 9 C -0.07 -1.47 5.47 -104.91 -0.57 -2.05 16 10 C -0.20 -3.93 9.50 -39.00 -0.37 -4.30 16 11 C -0.11 -2.31 10.01 -39.71 -0.40 -2.71 16 12 C -0.14 -3.32 8.69 -38.85 -0.34 -3.65 16 13 C 0.08 2.15 5.57 -106.79 -0.60 1.56 16 14 C -0.45 -11.62 8.78 -37.78 -0.33 -11.96 16 15 H 0.08 2.13 7.74 -52.49 -0.41 1.72 16 16 C 0.08 1.85 5.14 -17.33 -0.09 1.76 16 17 N -0.79 -19.08 10.96 55.55 0.61 -18.48 16 18 Si 0.91 17.96 29.60 -169.99 -5.03 12.93 16 19 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 20 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 21 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 22 C -0.01 -0.21 7.16 -38.29 -0.27 -0.48 16 23 F -0.16 -3.74 15.32 2.25 0.03 -3.71 16 24 C -0.08 -1.13 9.14 -39.17 -0.36 -1.49 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 27 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 28 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 29 H 0.13 2.27 7.77 -52.49 -0.41 1.86 16 30 H 0.10 1.70 8.03 -52.48 -0.42 1.28 16 31 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.13 3.08 6.16 -52.49 -0.32 2.75 16 33 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 34 H 0.13 1.74 8.03 -52.48 -0.42 1.32 16 LS Contribution 311.80 15.07 4.70 4.70 Total: -1.00 -26.55 311.80 -7.93 -34.48 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -3.22 Total: 2.94 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -5.80 Total: -26.46 kcal Atomic # 7 Polarization: -26.27 SS G_CDS: 1.38 Total: -24.88 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.03 Total: -3.71 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -26.55 -7.93 -34.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242477605.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.300 kcal (2) G-P(sol) polarization free energy of solvation -26.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds