Wall clock time and date at job start Tue Mar 31 2020 05:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38052 * 119.85671 * 2 1 4 4 C 1.39676 * 120.08925 * 180.02562 * 3 2 1 5 5 C 1.43198 * 120.09073 * 180.02562 * 4 3 2 6 6 N 4.80329 * 134.43029 * 0.02562 * 2 1 3 7 7 C 1.39462 * 119.81710 * 359.71954 * 4 3 2 8 8 C 1.39060 * 119.71808 * 0.55435 * 7 4 3 9 9 C 1.48402 * 120.04520 * 179.72781 * 8 7 4 10 10 C 1.39573 * 120.01999 * 129.72355 * 9 8 7 11 11 C 1.38465 * 120.42355 * 179.73987 * 10 9 8 12 12 C 1.37655 * 120.45469 * 0.22927 * 11 10 9 13 13 C 1.40747 * 120.01587 * 0.04869 * 12 11 10 14 14 C 1.41314 * 120.21013 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00439 * 204.63151 * 14 13 12 16 16 C 1.39934 * 120.00241 * 24.63408 * 14 13 12 17 17 N 1.30853 * 119.99628 * 17.80020 * 16 14 13 18 18 Si 1.86795 * 120.00300 * 197.80714 * 16 14 13 19 19 H 1.48500 * 109.47233 * 59.99496 * 18 16 14 20 20 H 1.48498 * 109.47167 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46942 * 299.99544 * 18 16 14 22 22 C 1.39061 * 120.01157 * 309.99143 * 9 8 7 23 23 F 1.35101 * 120.22534 * 0.02562 * 22 9 8 24 24 C 1.38117 * 119.86333 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.47206 * 269.98320 * 1 2 3 26 26 H 1.09000 * 109.47231 * 29.98133 * 1 2 3 27 27 H 1.09005 * 109.46779 * 149.98047 * 1 2 3 28 28 H 1.08003 * 119.95512 * 359.97438 * 3 2 1 29 29 H 1.07999 * 120.14229 * 180.30110 * 7 4 3 30 30 H 1.08003 * 119.78739 * 0.02562 * 10 9 8 31 31 H 1.08000 * 119.77407 * 180.25251 * 11 10 9 32 32 H 1.07996 * 119.99458 * 180.02562 * 12 11 10 33 33 H 0.96998 * 120.00032 * 180.02562 * 17 16 14 34 34 H 1.08006 * 119.90329 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1943 1.1973 0.0000 4 6 3.5910 1.2030 -0.0005 5 6 4.3039 2.4449 0.0000 6 7 4.8695 3.4300 0.0015 7 6 4.2894 -0.0042 0.0048 8 6 3.5893 -1.2057 -0.0010 9 6 4.3251 -2.4944 -0.0014 10 6 3.9970 -3.4862 0.9243 11 6 4.6744 -4.6938 0.9279 12 6 5.6834 -4.9304 0.0219 13 6 6.0337 -3.9413 -0.9162 14 6 7.0692 -4.1797 -1.8478 15 1 7.6067 -3.3496 -2.2819 16 6 7.3982 -5.4912 -2.2079 17 7 6.5556 -6.4647 -1.9741 18 14 9.0401 -5.8524 -3.0222 19 1 10.1428 -5.4417 -2.1163 20 1 9.1449 -7.3072 -3.3010 21 1 9.1379 -5.0954 -4.2960 22 6 5.3456 -2.7124 -0.9206 23 9 5.6715 -1.7538 -1.8150 24 6 2.1947 -1.1978 -0.0005 25 1 -0.3634 -0.0003 1.0277 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3633 -0.8899 -0.5142 28 1 1.6512 2.1308 -0.0004 29 1 5.3694 -0.0059 0.0094 30 1 3.2065 -3.3123 1.6394 31 1 4.4092 -5.4554 1.6462 32 1 6.2066 -5.8751 0.0310 33 1 6.7838 -7.3740 -2.2234 34 1 1.6509 -2.1309 -0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242477605.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:18 Heat of formation + Delta-G solvation = -0.803683 kcal Electronic energy + Delta-G solvation = -20167.345974 eV Core-core repulsion = 16943.085345 eV Total energy + Delta-G solvation = -3224.260629 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.20541 -40.68536 -39.01087 -37.61362 -35.81897 -34.01943 -33.11499 -31.50313 -29.76402 -27.84244 -27.22490 -25.00053 -23.85442 -22.62655 -21.50718 -19.55118 -18.54248 -17.92177 -17.23745 -17.22080 -16.70133 -16.29190 -15.93363 -15.80867 -15.18969 -14.85405 -14.61009 -14.28096 -14.23454 -14.07060 -13.98713 -13.74408 -13.50234 -13.20965 -13.03232 -12.82324 -12.77766 -12.44608 -12.33298 -12.30391 -12.11077 -11.68725 -11.38079 -11.10021 -10.10524 -9.69974 -9.37801 -8.98357 -8.70154 -6.42434 -0.23631 0.13816 0.83419 0.97077 1.36417 1.46299 1.49905 1.52668 1.89554 2.17909 2.61647 2.79338 2.86639 3.49987 3.70646 3.87606 4.01889 4.11751 4.28483 4.39900 4.47487 4.58635 4.73310 4.85020 4.93467 5.00328 5.01749 5.14262 5.22826 5.26098 5.34802 5.46919 5.51182 5.64477 5.76295 5.88589 6.01494 6.03797 6.17953 6.35202 6.55814 6.76983 6.87404 8.24551 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.021398 B = 0.004620 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.232754 B = 6058.850552 C = 6913.163887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.079 4.079 3 C -0.065 4.065 4 C -0.034 4.034 5 C 0.282 3.718 6 N -0.461 5.461 7 C -0.074 4.074 8 C -0.040 4.040 9 C -0.063 4.063 10 C -0.188 4.188 11 C -0.107 4.107 12 C -0.162 4.162 13 C 0.055 3.945 14 C -0.498 4.498 15 H 0.066 0.934 16 C 0.043 3.957 17 N -0.814 5.814 18 Si 0.979 3.021 19 H -0.261 1.261 20 H -0.259 1.259 21 H -0.265 1.265 22 C -0.043 4.043 23 F -0.167 7.167 24 C -0.075 4.075 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.076 0.924 28 H 0.162 0.838 29 H 0.110 0.890 30 H 0.139 0.861 31 H 0.130 0.870 32 H 0.113 0.887 33 H 0.293 0.707 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.190 4.963 4.582 13.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.079 4.079 3 C -0.085 4.085 4 C -0.038 4.038 5 C -0.033 4.033 6 N -0.137 5.137 7 C -0.095 4.095 8 C -0.040 4.040 9 C -0.064 4.064 10 C -0.206 4.206 11 C -0.126 4.126 12 C -0.182 4.182 13 C 0.052 3.948 14 C -0.527 4.527 15 H 0.085 0.915 16 C -0.173 4.173 17 N -0.439 5.439 18 Si 0.800 3.200 19 H -0.185 1.185 20 H -0.183 1.183 21 H -0.190 1.190 22 C -0.063 4.063 23 F -0.146 7.146 24 C -0.094 4.094 25 H 0.108 0.892 26 H 0.104 0.896 27 H 0.095 0.905 28 H 0.180 0.820 29 H 0.128 0.872 30 H 0.157 0.843 31 H 0.148 0.852 32 H 0.131 0.869 33 H 0.104 0.896 34 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.349 6.272 4.508 12.913 hybrid contribution 1.252 -0.631 -0.786 1.607 sum -9.097 5.641 3.722 11.333 Atomic orbital electron populations 1.20880 0.87511 1.04312 1.03976 1.20063 0.98196 0.91120 0.98554 1.21333 0.90402 0.99907 0.96866 1.15845 0.93268 0.85226 1.09450 1.25835 0.92550 0.92573 0.92316 1.81214 1.09197 1.12496 1.10764 1.21150 0.99601 0.90906 0.97855 1.18687 0.94077 0.91009 1.00234 1.18553 0.95969 0.94743 0.97122 1.20690 1.04713 0.93307 1.01939 1.21031 0.96031 0.97102 0.98403 1.21256 1.00943 1.00000 0.95994 1.17914 0.92623 0.90763 0.93513 1.19618 1.16388 0.93719 1.22936 0.91550 1.26623 1.01109 0.94890 0.94719 1.69814 1.35030 1.02359 1.36697 0.85290 0.77330 0.78443 0.78948 1.18514 1.18285 1.18996 1.18160 1.02401 0.89823 0.95927 1.91241 1.92668 1.63022 1.67700 1.21563 0.91773 0.99619 0.96396 0.89237 0.89639 0.90550 0.82040 0.87205 0.84310 0.85211 0.86884 0.89585 0.83809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.00 71.24 0.71 -0.57 16 2 C -0.08 -1.54 5.87 -19.94 -0.12 -1.66 16 3 C -0.06 -1.31 9.39 22.57 0.21 -1.09 16 4 C -0.03 -0.93 5.73 -21.39 -0.12 -1.05 16 5 C 0.28 8.22 15.32 88.33 1.35 9.58 16 6 N -0.46 -15.06 18.54 19.00 0.35 -14.71 16 7 C -0.07 -2.45 8.56 22.76 0.19 -2.25 16 8 C -0.04 -1.35 5.31 -20.08 -0.11 -1.45 16 9 C -0.06 -2.61 5.47 -20.05 -0.11 -2.72 16 10 C -0.19 -7.07 9.50 22.65 0.22 -6.86 16 11 C -0.11 -4.38 10.01 22.19 0.22 -4.16 16 12 C -0.16 -7.98 8.69 22.75 0.20 -7.78 16 13 C 0.05 2.93 5.57 -21.27 -0.12 2.81 16 14 C -0.50 -27.24 8.78 23.44 0.21 -27.04 16 15 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 16 C 0.04 2.13 5.14 85.25 0.44 2.57 16 17 N -0.81 -40.78 10.96 21.83 0.24 -40.54 16 18 Si 0.98 37.99 29.60 68.60 2.03 40.02 16 19 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 20 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 21 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 22 C -0.04 -2.15 7.16 23.11 0.17 -1.98 16 23 F -0.17 -8.51 15.32 44.97 0.69 -7.82 16 24 C -0.07 -1.92 9.14 22.53 0.21 -1.71 16 25 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 27 H 0.08 0.85 8.08 -2.38 -0.02 0.83 16 28 H 0.16 2.19 8.06 -2.91 -0.02 2.16 16 29 H 0.11 4.01 7.77 -2.91 -0.02 3.99 16 30 H 0.14 4.16 8.03 -2.91 -0.02 4.13 16 31 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 32 H 0.11 5.75 6.16 -2.91 -0.02 5.74 16 33 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 34 H 0.14 3.29 8.03 -2.91 -0.02 3.27 16 Total: -1.00 -61.72 311.80 8.00 -53.72 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 1.14 Total: 14.70 kcal Atomic # 6 Polarization: -48.92 SS G_CDS: 3.55 Total: -45.37 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.59 Total: -55.25 kcal Atomic # 9 Polarization: -8.51 SS G_CDS: 0.69 Total: -7.82 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Total: -61.72 8.00 -53.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242477605.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.919 kcal (2) G-P(sol) polarization free energy of solvation -61.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds