Wall clock time and date at job start Tue Mar 31 2020 05:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38123 * 119.84324 * 2 1 4 4 C 1.39738 * 120.14783 * 179.97438 * 3 2 1 5 5 C 1.43197 * 120.07726 * 179.74678 * 4 3 2 6 6 N 4.80460 * 134.36946 * 359.83746 * 2 1 3 7 7 C 1.39370 * 119.84655 * 0.02986 * 4 3 2 8 8 C 1.39382 * 119.69147 * 0.02562 * 7 4 3 9 9 C 1.47882 * 120.07834 * 179.97438 * 8 7 4 10 10 C 1.39132 * 120.24692 * 129.69825 * 9 8 7 11 11 C 1.38024 * 120.13148 * 179.74940 * 10 9 8 12 12 C 1.39174 * 120.65154 * 0.55752 * 11 10 9 13 13 F 1.35094 * 119.75567 * 179.72118 * 12 11 10 14 14 C 1.37655 * 120.49734 * 359.69961 * 12 11 10 15 15 C 1.40715 * 119.84139 * 0.02562 * 14 12 11 16 16 C 1.40891 * 120.31440 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99977 * 154.11980 * 16 15 14 18 18 C 1.40059 * 119.99598 * 334.11835 * 16 15 14 19 19 N 1.30775 * 120.00419 * 344.25913 * 18 16 15 20 20 Si 1.86798 * 119.99774 * 164.25553 * 18 16 15 21 21 H 1.48506 * 109.47176 * 90.00096 * 20 18 16 22 22 H 1.48501 * 109.47404 * 210.00222 * 20 18 16 23 23 H 1.48498 * 109.47240 * 330.00010 * 20 18 16 24 24 C 1.38024 * 119.84247 * 180.02562 * 2 1 3 25 25 H 1.09003 * 109.46853 * 89.99785 * 1 2 3 26 26 H 1.09000 * 109.47052 * 209.99749 * 1 2 3 27 27 H 1.08998 * 109.47450 * 329.99759 * 1 2 3 28 28 H 1.08001 * 119.92416 * 0.02562 * 3 2 1 29 29 H 1.07992 * 120.15623 * 179.97438 * 7 4 3 30 30 H 1.07997 * 119.93387 * 0.02826 * 10 9 8 31 31 H 1.07998 * 119.67356 * 180.27984 * 11 10 9 32 32 H 1.07991 * 120.07821 * 180.02562 * 14 12 11 33 33 H 0.97001 * 120.00187 * 180.02562 * 19 18 16 34 34 H 1.08001 * 119.92130 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1981 0.0000 4 6 3.5917 1.2055 0.0005 5 6 4.3028 2.4484 -0.0049 6 7 4.8668 3.4345 -0.0097 7 6 4.2918 0.0004 0.0005 8 6 3.5915 -1.2048 -0.0007 9 6 4.3257 -2.4885 -0.0014 10 6 4.0068 -3.4787 0.9225 11 6 4.6901 -4.6780 0.9164 12 6 5.7103 -4.9086 -0.0016 13 9 6.3710 -6.0869 0.0122 14 6 6.0511 -3.9453 -0.9240 15 6 5.3644 -2.7172 -0.9401 16 6 5.7053 -1.7241 -1.8795 17 1 4.9698 -0.9947 -2.1852 18 6 6.9981 -1.6827 -2.4167 19 7 7.9669 -2.3466 -1.8414 20 14 7.3386 -0.6792 -3.9550 21 1 7.7226 0.7027 -3.5697 22 1 8.4466 -1.3058 -4.7197 23 1 6.1172 -0.6365 -4.7986 24 6 2.1939 -1.1972 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6506 2.1312 0.0004 29 1 5.3717 0.0003 0.0004 30 1 3.2201 -3.3104 1.6430 31 1 4.4334 -5.4432 1.6340 32 1 6.8437 -4.1316 -1.6335 33 1 8.8623 -2.3176 -2.2133 34 1 1.6500 -2.1303 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242479529.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:38 Heat of formation + Delta-G solvation = 6.827041 kcal Electronic energy + Delta-G solvation = -20416.957626 eV Core-core repulsion = 17193.027890 eV Total energy + Delta-G solvation = -3223.929736 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.76706 -39.33890 -37.39344 -36.11434 -33.94996 -32.77638 -31.58831 -29.97602 -28.11165 -26.65228 -25.65911 -23.56371 -21.97996 -21.38242 -19.75706 -17.85884 -17.56196 -16.05954 -15.81257 -15.35353 -14.98065 -14.72879 -14.59913 -14.41489 -13.86601 -13.24835 -13.18757 -13.07349 -12.80293 -12.69178 -12.63402 -12.29855 -12.02586 -11.77268 -11.70712 -11.37368 -11.26338 -11.03160 -10.93692 -10.73951 -10.52900 -10.06852 -9.80757 -9.41551 -8.52112 -8.31599 -7.76215 -7.31214 -6.99371 -4.67025 1.17773 1.64500 2.48861 2.64604 2.96038 2.96511 2.98340 3.04755 3.33710 3.74526 4.20492 4.25654 4.35061 5.06644 5.18197 5.31301 5.38157 5.53367 5.61756 5.70050 5.75189 5.86769 5.97015 6.06046 6.21471 6.28134 6.42286 6.67186 6.72755 6.76525 6.80483 6.94081 7.07800 7.25586 7.30915 7.50543 7.59735 7.71846 7.78462 7.97068 8.30189 8.54929 8.59223 9.87681 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.011803 B = 0.007486 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.664019 B = 3739.660390 C = 5468.732274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.094 4.094 3 C -0.097 4.097 4 C -0.039 4.039 5 C 0.269 3.731 6 N -0.441 5.441 7 C -0.052 4.052 8 C 0.024 3.976 9 C -0.199 4.199 10 C -0.041 4.041 11 C -0.278 4.278 12 C 0.111 3.889 13 F -0.166 7.166 14 C -0.196 4.196 15 C 0.148 3.852 16 C -0.443 4.443 17 H 0.090 0.910 18 C 0.076 3.924 19 N -0.776 5.776 20 Si 0.904 3.096 21 H -0.266 1.266 22 H -0.273 1.273 23 H -0.256 1.256 24 C -0.099 4.099 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.121 0.879 29 H 0.140 0.860 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.132 0.868 33 H 0.287 0.713 34 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.258 1.658 1.313 9.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.094 4.094 3 C -0.117 4.117 4 C -0.042 4.042 5 C -0.046 4.046 6 N -0.116 5.116 7 C -0.073 4.073 8 C 0.024 3.976 9 C -0.201 4.201 10 C -0.059 4.059 11 C -0.298 4.298 12 C 0.091 3.909 13 F -0.145 7.145 14 C -0.216 4.216 15 C 0.145 3.855 16 C -0.471 4.471 17 H 0.108 0.892 18 C -0.145 4.145 19 N -0.400 5.400 20 Si 0.728 3.272 21 H -0.191 1.191 22 H -0.197 1.197 23 H -0.180 1.180 24 C -0.118 4.118 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.139 0.861 29 H 0.157 0.843 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.149 0.851 33 H 0.098 0.902 34 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.083 3.107 1.288 8.755 hybrid contribution 0.351 -0.232 -0.668 0.789 sum -7.733 2.876 0.621 8.273 Atomic orbital electron populations 1.20739 0.91215 1.02466 1.02171 1.19579 0.95766 0.92582 1.01464 1.20796 0.91625 0.97833 1.01489 1.15931 0.92205 0.86761 1.09329 1.25856 0.92995 0.92800 0.92952 1.81170 1.08754 1.11683 1.10015 1.21540 1.01015 0.89599 0.95096 1.18625 0.91755 0.92653 0.94566 1.18492 1.05691 0.93574 1.02326 1.20369 0.97085 0.91948 0.96501 1.20204 1.03893 1.00088 1.05628 1.17796 0.93385 0.81215 0.98454 1.91343 1.80276 1.46607 1.96294 1.21279 1.05511 0.93015 1.01788 1.17240 0.87976 0.90956 0.89298 1.19644 0.96462 1.11728 1.19271 0.89249 1.26012 0.95891 0.95055 0.97505 1.69763 1.01986 1.32696 1.35512 0.86331 0.79489 0.80179 0.81229 1.19068 1.19728 1.17964 1.21425 0.93652 0.97285 0.99430 0.91365 0.91565 0.91869 0.86138 0.84256 0.87969 0.87993 0.85060 0.90165 0.85808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.00 36.01 0.36 -0.69 16 2 C -0.09 -1.22 5.87 -104.74 -0.61 -1.84 16 3 C -0.10 -1.30 9.39 -39.06 -0.37 -1.67 16 4 C -0.04 -0.62 5.73 -106.99 -0.61 -1.23 16 5 C 0.27 4.53 15.32 -22.47 -0.34 4.19 16 6 N -0.44 -8.10 18.54 41.84 0.78 -7.32 16 7 C -0.05 -0.93 7.68 -38.73 -0.30 -1.23 16 8 C 0.02 0.44 4.92 -104.95 -0.52 -0.08 16 9 C -0.20 -4.16 5.52 -104.23 -0.58 -4.73 16 10 C -0.04 -0.80 9.49 -39.33 -0.37 -1.17 16 11 C -0.28 -5.77 10.01 -39.31 -0.39 -6.17 16 12 C 0.11 2.54 7.28 -39.45 -0.29 2.25 16 13 F -0.17 -3.73 17.26 2.25 0.04 -3.69 16 14 C -0.20 -4.75 8.64 -38.86 -0.34 -5.08 16 15 C 0.15 3.49 5.56 -106.57 -0.59 2.89 16 16 C -0.44 -10.29 7.13 -37.90 -0.27 -10.56 16 17 H 0.09 2.01 6.58 -52.49 -0.35 1.67 16 18 C 0.08 1.74 5.17 -17.32 -0.09 1.65 16 19 N -0.78 -18.45 10.92 55.55 0.61 -17.84 16 20 Si 0.90 17.55 29.59 -169.99 -5.03 12.52 16 21 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 22 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 23 H -0.26 -4.94 7.11 56.52 0.40 -4.53 16 24 C -0.10 -1.49 9.16 -39.09 -0.36 -1.85 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 27 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 28 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 29 H 0.14 2.74 7.30 -52.49 -0.38 2.36 16 30 H 0.10 1.70 8.04 -52.49 -0.42 1.28 16 31 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 32 H 0.13 3.33 6.18 -52.49 -0.32 3.00 16 33 H 0.29 6.25 8.29 -40.82 -0.34 5.91 16 34 H 0.12 1.71 8.04 -52.49 -0.42 1.28 16 LS Contribution 309.35 15.07 4.66 4.66 Total: -1.00 -25.05 309.35 -7.75 -32.80 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -3.14 Total: 4.19 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -5.67 Total: -25.31 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 1.38 Total: -25.16 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.04 Total: -3.69 kcal Atomic # 14 Polarization: 17.55 SS G_CDS: -5.03 Total: 12.52 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -25.05 -7.75 -32.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242479529.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.629 kcal (2) G-P(sol) polarization free energy of solvation -25.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds