Wall clock time and date at job start Tue Mar 31 2020 05:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38123 * 119.84324 * 2 1 4 4 C 1.39738 * 120.14783 * 179.97438 * 3 2 1 5 5 C 1.43197 * 120.07726 * 179.74678 * 4 3 2 6 6 N 4.80460 * 134.36946 * 359.83746 * 2 1 3 7 7 C 1.39370 * 119.84655 * 0.02986 * 4 3 2 8 8 C 1.39382 * 119.69147 * 0.02562 * 7 4 3 9 9 C 1.47882 * 120.07834 * 179.97438 * 8 7 4 10 10 C 1.39132 * 120.24692 * 129.69825 * 9 8 7 11 11 C 1.38024 * 120.13148 * 179.74940 * 10 9 8 12 12 C 1.39174 * 120.65154 * 0.55752 * 11 10 9 13 13 F 1.35094 * 119.75567 * 179.72118 * 12 11 10 14 14 C 1.37655 * 120.49734 * 359.69961 * 12 11 10 15 15 C 1.40715 * 119.84139 * 0.02562 * 14 12 11 16 16 C 1.40891 * 120.31440 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99977 * 154.11980 * 16 15 14 18 18 C 1.40059 * 119.99598 * 334.11835 * 16 15 14 19 19 N 1.30775 * 120.00419 * 344.25913 * 18 16 15 20 20 Si 1.86798 * 119.99774 * 164.25553 * 18 16 15 21 21 H 1.48506 * 109.47176 * 90.00096 * 20 18 16 22 22 H 1.48501 * 109.47404 * 210.00222 * 20 18 16 23 23 H 1.48498 * 109.47240 * 330.00010 * 20 18 16 24 24 C 1.38024 * 119.84247 * 180.02562 * 2 1 3 25 25 H 1.09003 * 109.46853 * 89.99785 * 1 2 3 26 26 H 1.09000 * 109.47052 * 209.99749 * 1 2 3 27 27 H 1.08998 * 109.47450 * 329.99759 * 1 2 3 28 28 H 1.08001 * 119.92416 * 0.02562 * 3 2 1 29 29 H 1.07992 * 120.15623 * 179.97438 * 7 4 3 30 30 H 1.07997 * 119.93387 * 0.02826 * 10 9 8 31 31 H 1.07998 * 119.67356 * 180.27984 * 11 10 9 32 32 H 1.07991 * 120.07821 * 180.02562 * 14 12 11 33 33 H 0.97001 * 120.00187 * 180.02562 * 19 18 16 34 34 H 1.08001 * 119.92130 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.1981 0.0000 4 6 3.5917 1.2055 0.0005 5 6 4.3028 2.4484 -0.0049 6 7 4.8668 3.4345 -0.0097 7 6 4.2918 0.0004 0.0005 8 6 3.5915 -1.2048 -0.0007 9 6 4.3257 -2.4885 -0.0014 10 6 4.0068 -3.4787 0.9225 11 6 4.6901 -4.6780 0.9164 12 6 5.7103 -4.9086 -0.0016 13 9 6.3710 -6.0869 0.0122 14 6 6.0511 -3.9453 -0.9240 15 6 5.3644 -2.7172 -0.9401 16 6 5.7053 -1.7241 -1.8795 17 1 4.9698 -0.9947 -2.1852 18 6 6.9981 -1.6827 -2.4167 19 7 7.9669 -2.3466 -1.8414 20 14 7.3386 -0.6792 -3.9550 21 1 7.7226 0.7027 -3.5697 22 1 8.4466 -1.3058 -4.7197 23 1 6.1172 -0.6365 -4.7986 24 6 2.1939 -1.1972 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6506 2.1312 0.0004 29 1 5.3717 0.0003 0.0004 30 1 3.2201 -3.3104 1.6430 31 1 4.4334 -5.4432 1.6340 32 1 6.8437 -4.1316 -1.6335 33 1 8.8623 -2.3176 -2.2133 34 1 1.6500 -2.1303 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242479529.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:38 Heat of formation + Delta-G solvation = -2.199379 kcal Electronic energy + Delta-G solvation = -20417.349041 eV Core-core repulsion = 17193.027890 eV Total energy + Delta-G solvation = -3224.321151 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.55280 -40.65146 -38.96394 -37.47973 -35.64695 -33.96981 -32.93432 -31.66553 -29.63362 -27.66627 -27.33104 -24.84355 -23.45708 -23.06385 -21.16569 -19.51915 -18.93249 -17.79510 -17.02909 -16.82399 -16.55843 -16.23629 -16.22302 -16.11350 -15.10718 -14.79662 -14.48070 -14.33687 -14.20221 -13.96565 -13.91721 -13.86839 -13.43891 -13.18931 -12.89740 -12.85581 -12.71591 -12.40264 -12.27278 -12.20429 -12.08924 -11.58678 -11.45103 -11.12441 -9.87737 -9.55449 -9.44494 -8.95252 -8.66598 -6.42365 -0.07880 0.31769 0.86724 1.01966 1.34435 1.42116 1.47755 1.61424 2.00281 2.12393 2.60922 2.92737 3.00754 3.58057 3.81804 4.00245 4.07782 4.30200 4.45599 4.47006 4.56437 4.62252 4.74607 4.99039 5.04613 5.05720 5.08254 5.12819 5.27333 5.39847 5.43880 5.61026 5.66058 5.70281 5.80582 5.86623 6.01921 6.12345 6.26367 6.44929 6.56853 6.82130 6.87233 8.20315 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.011803 B = 0.007486 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.664019 B = 3739.660390 C = 5468.732274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.083 4.083 3 C -0.078 4.078 4 C -0.044 4.044 5 C 0.283 3.717 6 N -0.471 5.471 7 C -0.066 4.066 8 C -0.003 4.003 9 C -0.191 4.191 10 C -0.040 4.040 11 C -0.274 4.274 12 C 0.092 3.908 13 F -0.169 7.169 14 C -0.225 4.225 15 C 0.122 3.878 16 C -0.461 4.461 17 H 0.090 0.910 18 C 0.040 3.960 19 N -0.814 5.814 20 Si 0.962 3.038 21 H -0.269 1.269 22 H -0.267 1.267 23 H -0.251 1.251 24 C -0.089 4.089 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.153 0.847 29 H 0.108 0.892 30 H 0.141 0.859 31 H 0.128 0.872 32 H 0.108 0.892 33 H 0.290 0.710 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.769 2.643 1.895 13.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.083 4.083 3 C -0.098 4.098 4 C -0.047 4.047 5 C -0.031 4.031 6 N -0.147 5.147 7 C -0.087 4.087 8 C -0.003 4.003 9 C -0.192 4.192 10 C -0.058 4.058 11 C -0.293 4.293 12 C 0.073 3.927 13 F -0.148 7.148 14 C -0.246 4.246 15 C 0.119 3.881 16 C -0.489 4.489 17 H 0.108 0.892 18 C -0.177 4.177 19 N -0.439 5.439 20 Si 0.784 3.216 21 H -0.195 1.195 22 H -0.191 1.191 23 H -0.174 1.174 24 C -0.107 4.107 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.171 0.829 29 H 0.126 0.874 30 H 0.159 0.841 31 H 0.146 0.854 32 H 0.126 0.874 33 H 0.101 0.899 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.602 4.085 1.874 12.442 hybrid contribution 1.276 -0.530 -0.732 1.564 sum -10.326 3.555 1.142 10.980 Atomic orbital electron populations 1.20841 0.87938 1.04238 1.03466 1.19980 0.97875 0.91314 0.99104 1.21207 0.90358 0.99633 0.98602 1.15933 0.93281 0.85314 1.10184 1.26009 0.92377 0.92643 0.92060 1.81180 1.09443 1.12819 1.11235 1.21258 0.99718 0.90783 0.96974 1.18534 0.93129 0.91178 0.97448 1.18856 1.04319 0.95052 1.01011 1.20773 0.97533 0.90965 0.96521 1.20551 1.02626 1.01211 1.04962 1.18051 0.94373 0.81069 0.99186 1.91323 1.80525 1.46584 1.96366 1.21207 1.06256 0.94354 1.02734 1.17562 0.89276 0.90806 0.90445 1.19743 0.96839 1.12113 1.20253 0.89210 1.26692 0.95611 0.95799 0.99589 1.69830 1.02421 1.34614 1.36995 0.85468 0.79468 0.78452 0.78246 1.19450 1.19109 1.17446 1.21620 0.92134 0.99118 0.97875 0.90138 0.90235 0.89844 0.82895 0.87364 0.84092 0.85439 0.87392 0.89907 0.84045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 10.00 71.24 0.71 -0.73 16 2 C -0.08 -1.77 5.87 -19.94 -0.12 -1.89 16 3 C -0.08 -1.78 9.39 22.61 0.21 -1.57 16 4 C -0.04 -1.31 5.73 -21.40 -0.12 -1.43 16 5 C 0.28 9.29 15.32 88.33 1.35 10.64 16 6 N -0.47 -17.03 18.54 19.00 0.35 -16.68 16 7 C -0.07 -2.38 7.68 22.82 0.18 -2.21 16 8 C 0.00 -0.10 4.92 -20.08 -0.10 -0.19 16 9 C -0.19 -7.91 5.52 -19.61 -0.11 -8.02 16 10 C -0.04 -1.49 9.49 22.43 0.21 -1.28 16 11 C -0.27 -11.04 10.01 22.44 0.22 -10.81 16 12 C 0.09 4.32 7.28 22.36 0.16 4.49 16 13 F -0.17 -7.77 17.26 44.97 0.78 -7.00 16 14 C -0.23 -11.46 8.64 22.74 0.20 -11.27 16 15 C 0.12 5.94 5.56 -21.13 -0.12 5.82 16 16 C -0.46 -22.32 7.13 23.36 0.17 -22.16 16 17 H 0.09 4.18 6.58 -2.91 -0.02 4.16 16 18 C 0.04 1.91 5.17 85.29 0.44 2.36 16 19 N -0.81 -41.01 10.92 21.85 0.24 -40.77 16 20 Si 0.96 37.18 29.59 68.60 2.03 39.21 16 21 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 22 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 23 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 24 C -0.09 -2.37 9.16 22.59 0.21 -2.16 16 25 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.08 0.91 8.08 -2.39 -0.02 0.89 16 27 H 0.08 0.84 8.08 -2.39 -0.02 0.82 16 28 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 29 H 0.11 4.50 7.30 -2.91 -0.02 4.48 16 30 H 0.14 4.13 8.04 -2.91 -0.02 4.11 16 31 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 32 H 0.11 5.89 6.18 -2.92 -0.02 5.88 16 33 H 0.29 13.41 8.29 -92.71 -0.77 12.64 16 34 H 0.14 3.27 8.04 -2.91 -0.02 3.25 16 Total: -1.00 -57.19 309.35 8.04 -49.15 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 1.14 Total: 16.50 kcal Atomic # 6 Polarization: -43.91 SS G_CDS: 3.50 Total: -40.41 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: 0.59 Total: -57.45 kcal Atomic # 9 Polarization: -7.77 SS G_CDS: 0.78 Total: -7.00 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.21 kcal Total: -57.19 8.04 -49.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242479529.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.950 kcal (2) G-P(sol) polarization free energy of solvation -57.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds