Wall clock time and date at job start Tue Mar 31 2020 05:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36201 * 120.05496 * 2 1 4 4 C 1.40059 * 120.11196 * 179.97438 * 3 2 1 5 5 C 1.47691 * 119.89491 * 179.97438 * 4 3 2 6 6 C 1.39524 * 120.20109 * 309.72616 * 5 4 3 7 7 C 1.37874 * 120.02903 * 179.76605 * 6 5 4 8 8 C 1.38830 * 120.44319 * 0.51174 * 7 6 5 9 9 F 1.35102 * 119.79432 * 179.76261 * 8 7 6 10 10 C 1.38230 * 120.41317 * 359.74027 * 8 7 6 11 11 C 1.39463 * 119.95811 * 0.02562 * 10 8 7 12 12 C 1.43199 * 120.22158 * 179.97438 * 11 10 8 13 13 N 5.26165 * 148.02112 * 71.70376 * 2 1 3 14 14 C 1.40089 * 120.21402 * 359.97438 * 4 3 2 15 15 C 1.36181 * 120.11078 * 0.02562 * 14 4 3 16 16 C 1.40965 * 120.05603 * 179.97438 * 2 1 3 17 17 C 1.40943 * 120.10339 * 359.75300 * 16 2 1 18 18 H 1.08002 * 120.00731 * 333.58070 * 17 16 2 19 19 C 1.40057 * 120.00017 * 153.57971 * 17 16 2 20 20 N 1.30766 * 119.99919 * 344.00999 * 19 17 16 21 21 Si 1.86799 * 120.00185 * 164.00435 * 19 17 16 22 22 H 1.48497 * 109.46914 * 60.00318 * 21 19 17 23 23 H 1.48503 * 109.47130 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46894 * 300.00294 * 21 19 17 25 25 H 1.08999 * 109.47091 * 270.02426 * 1 2 3 26 26 H 1.08999 * 109.47129 * 30.02504 * 1 2 3 27 27 H 1.09006 * 109.46862 * 150.02386 * 1 2 3 28 28 H 1.08004 * 119.94607 * 359.97438 * 3 2 1 29 29 H 1.08005 * 119.98475 * 359.97438 * 6 5 4 30 30 H 1.07996 * 119.77337 * 180.22770 * 7 6 5 31 31 H 1.08005 * 120.02258 * 180.02562 * 10 8 7 32 32 H 1.07998 * 119.94517 * 179.97438 * 14 4 3 33 33 H 1.08003 * 120.05454 * 180.02562 * 15 14 4 34 34 H 0.97005 * 120.00614 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1891 1.1789 0.0000 4 6 3.5897 1.1803 0.0005 5 6 4.3246 2.4614 0.0000 6 6 4.0056 3.4530 -0.9283 7 6 4.6906 4.6496 -0.9225 8 6 5.7070 4.8738 -0.0038 9 9 6.3729 6.0493 -0.0130 10 6 6.0417 3.9021 0.9206 11 6 5.3566 2.6874 0.9331 12 6 5.6990 1.6766 1.8879 13 7 5.9702 0.8748 2.6457 14 6 4.2959 -0.0296 0.0016 15 6 3.6229 -1.2135 0.0016 16 6 2.2130 -1.2201 0.0005 17 6 1.5117 -2.4427 0.0063 18 1 0.5180 -2.4933 0.4263 19 6 2.1035 -3.5920 -0.5326 20 7 3.1493 -3.4856 -1.3103 21 14 1.3988 -5.2769 -0.1403 22 1 -0.0090 -5.3456 -0.6075 23 1 2.2005 -6.3210 -0.8277 24 1 1.4453 -5.5036 1.3266 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8903 -0.5135 28 1 1.6491 2.1142 -0.0004 29 1 3.2195 3.2846 -1.6494 30 1 4.4379 5.4157 -1.6405 31 1 6.8332 4.0834 1.6327 32 1 5.3759 -0.0235 0.0016 33 1 4.1682 -2.1457 0.0029 34 1 3.5595 -4.2816 -1.6833 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242582447.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:54 Heat of formation + Delta-G solvation = 12.580998 kcal Electronic energy + Delta-G solvation = -20151.722081 eV Core-core repulsion = 16928.041855 eV Total energy + Delta-G solvation = -3223.680226 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.77877 -39.34925 -37.61314 -35.95150 -34.04439 -32.22248 -31.32028 -30.69094 -28.78239 -26.36133 -25.00904 -23.84360 -22.54627 -20.68026 -19.76741 -18.81896 -17.42227 -16.35401 -16.10391 -15.70775 -15.51005 -15.38090 -14.22792 -14.03467 -13.73333 -13.55481 -13.34363 -13.12462 -12.79653 -12.69429 -12.45327 -12.16167 -11.87788 -11.80507 -11.57420 -11.29490 -11.28471 -11.12101 -10.97789 -10.72421 -10.51084 -9.74807 -9.54059 -9.35354 -8.99013 -8.53860 -7.57167 -7.30840 -6.97664 -4.54374 0.84593 1.22932 2.56683 2.91997 2.95423 2.96583 3.02683 3.10926 3.21751 3.75924 4.04128 4.05150 4.41416 4.53833 4.89331 5.05277 5.16608 5.39361 5.51755 5.79731 6.00732 6.05816 6.10466 6.23645 6.27490 6.32156 6.53231 6.57341 6.59711 6.82979 6.86076 6.95692 7.07274 7.20618 7.46685 7.69237 7.85472 7.87780 7.90723 8.08044 8.40667 8.64849 8.75953 9.92936 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027578 B = 0.004267 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.060780 B = 6560.139795 C = 7052.076783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.202 4.202 3 C -0.051 4.051 4 C -0.226 4.226 5 C 0.063 3.937 6 C -0.103 4.103 7 C -0.119 4.119 8 C 0.062 3.938 9 F -0.144 7.144 10 C -0.101 4.101 11 C -0.023 4.023 12 C 0.266 3.734 13 N -0.418 5.418 14 C -0.070 4.070 15 C -0.165 4.165 16 C 0.127 3.873 17 C -0.442 4.442 18 H 0.085 0.915 19 C 0.074 3.926 20 N -0.776 5.776 21 Si 0.911 3.089 22 H -0.262 1.262 23 H -0.276 1.276 24 H -0.261 1.261 25 H 0.042 0.958 26 H 0.040 0.960 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.141 0.859 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.875 9.726 -1.003 9.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.204 4.204 3 C -0.070 4.070 4 C -0.227 4.227 5 C 0.060 3.940 6 C -0.121 4.121 7 C -0.138 4.138 8 C 0.042 3.958 9 F -0.123 7.123 10 C -0.122 4.122 11 C -0.026 4.026 12 C -0.049 4.049 13 N -0.093 5.093 14 C -0.089 4.089 15 C -0.184 4.184 16 C 0.124 3.876 17 C -0.470 4.470 18 H 0.103 0.897 19 C -0.147 4.147 20 N -0.400 5.400 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.201 1.201 24 H -0.186 1.186 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.158 0.842 30 H 0.153 0.847 31 H 0.155 0.845 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.487 8.363 0.019 8.495 hybrid contribution -0.107 -0.279 -0.277 0.407 sum 1.380 8.085 -0.258 8.206 Atomic orbital electron populations 1.20411 0.93249 1.00745 0.99806 1.19435 0.94572 0.92939 1.13409 1.20152 0.92038 0.96250 0.98539 1.17881 0.92674 0.89764 1.22391 1.19106 0.90765 0.93988 0.90141 1.21190 1.00416 0.91877 0.98584 1.21220 0.95433 0.98642 0.98516 1.17313 0.96009 0.82750 0.99698 1.91476 1.79552 1.45069 1.96194 1.20894 1.00456 0.91895 0.98994 1.15896 1.00358 0.90717 0.95653 1.25287 0.93564 0.93031 0.93058 1.81182 1.08581 1.08815 1.10735 1.20394 0.96932 0.92329 0.99206 1.20939 0.94458 0.96559 1.06470 1.17593 0.91806 0.91763 0.86468 1.19703 1.02291 0.92491 1.32479 0.89683 1.26054 0.94143 1.01850 0.92637 1.69775 1.17439 1.32481 1.20278 0.86299 0.79992 0.80072 0.80136 1.18681 1.20084 1.18563 0.93947 0.94146 0.91983 0.88839 0.84154 0.84656 0.84500 0.89684 0.86443 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.63 9.38 36.01 0.34 -1.29 16 2 C -0.20 -4.52 5.90 -104.32 -0.62 -5.14 16 3 C -0.05 -1.05 9.08 -39.63 -0.36 -1.41 16 4 C -0.23 -4.60 5.12 -104.66 -0.54 -5.14 16 5 C 0.06 1.05 5.49 -104.53 -0.57 0.48 16 6 C -0.10 -1.40 9.50 -39.24 -0.37 -1.78 16 7 C -0.12 -1.40 10.00 -39.50 -0.39 -1.80 16 8 C 0.06 0.78 7.29 -39.37 -0.29 0.49 16 9 F -0.14 -1.81 17.26 2.25 0.04 -1.77 16 10 C -0.10 -1.33 9.72 -39.13 -0.38 -1.71 16 11 C -0.02 -0.36 5.74 -106.49 -0.61 -0.97 16 12 C 0.27 4.82 12.64 -22.47 -0.28 4.53 16 13 N -0.42 -8.37 18.54 41.84 0.78 -7.59 16 14 C -0.07 -1.58 8.36 -39.63 -0.33 -1.92 16 15 C -0.17 -4.13 8.62 -39.28 -0.34 -4.47 16 16 C 0.13 3.16 5.56 -106.80 -0.59 2.56 16 17 C -0.44 -10.85 8.09 -37.88 -0.31 -11.15 16 18 H 0.09 1.98 6.89 -52.49 -0.36 1.62 16 19 C 0.07 1.73 5.16 -17.32 -0.09 1.64 16 20 N -0.78 -18.91 10.97 55.55 0.61 -18.30 16 21 Si 0.91 17.58 29.59 -169.99 -5.03 12.55 16 22 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 23 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 24 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 25 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 27 H 0.06 1.21 6.79 -51.93 -0.35 0.86 16 28 H 0.09 1.65 8.04 -52.48 -0.42 1.23 16 29 H 0.14 1.76 8.04 -52.48 -0.42 1.34 16 30 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.14 1.53 8.06 -52.48 -0.42 1.10 16 32 H 0.08 1.86 7.27 -52.49 -0.38 1.48 16 33 H 0.12 3.08 6.23 -52.48 -0.33 2.75 16 34 H 0.29 6.35 8.30 -40.82 -0.34 6.01 16 LS Contribution 307.21 15.07 4.63 4.63 Total: -1.00 -25.99 307.21 -7.80 -33.79 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -3.09 Total: 3.76 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: -5.74 Total: -27.07 kcal Atomic # 7 Polarization: -27.28 SS G_CDS: 1.39 Total: -25.89 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 17.58 SS G_CDS: -5.03 Total: 12.55 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -25.99 -7.80 -33.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242582447.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.367 kcal (2) G-P(sol) polarization free energy of solvation -25.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds