Wall clock time and date at job start Tue Mar 31 2020 05:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38528 * 119.79605 * 2 1 4 4 C 1.38024 * 120.44536 * 180.25605 * 3 2 1 5 5 C 1.39202 * 120.02390 * 359.49001 * 4 3 2 6 6 C 1.48183 * 120.20333 * 180.22937 * 5 4 3 7 7 C 1.39913 * 119.97359 * 130.00361 * 6 5 4 8 8 C 1.38193 * 120.41365 * 180.02562 * 7 6 5 9 9 C 1.38092 * 120.35878 * 359.97438 * 8 7 6 10 10 F 1.35098 * 120.03629 * 180.02562 * 9 8 7 11 11 C 1.41055 * 119.93940 * 0.02562 * 9 8 7 12 12 C 1.41323 * 120.20424 * 180.02562 * 11 9 8 13 13 H 1.08007 * 119.99627 * 330.03226 * 12 11 9 14 14 C 1.39914 * 120.00175 * 150.03793 * 12 11 9 15 15 N 1.30856 * 120.00035 * 161.70462 * 14 12 11 16 16 Si 1.86796 * 120.00005 * 341.69780 * 14 12 11 17 17 H 1.48499 * 109.47028 * 95.42339 * 16 14 12 18 18 H 1.48498 * 109.47232 * 215.42297 * 16 14 12 19 19 H 1.48502 * 109.46981 * 335.42098 * 16 14 12 20 20 C 1.38791 * 119.97408 * 309.72686 * 6 5 4 21 21 C 1.40678 * 119.59610 * 0.25498 * 5 4 3 22 22 C 1.43192 * 120.22271 * 179.97438 * 21 5 4 23 23 N 4.80191 * 134.51910 * 179.75961 * 2 1 3 24 24 C 1.37920 * 119.79292 * 179.74572 * 2 1 3 25 25 H 1.09008 * 109.47239 * 270.25363 * 1 2 3 26 26 H 1.08993 * 109.47531 * 30.25478 * 1 2 3 27 27 H 1.08999 * 109.47180 * 150.25512 * 1 2 3 28 28 H 1.08003 * 119.77281 * 359.97438 * 3 2 1 29 29 H 1.08002 * 119.98661 * 179.76266 * 4 3 2 30 30 H 1.08002 * 119.79257 * 359.97438 * 7 6 5 31 31 H 1.08004 * 119.82187 * 179.97438 * 8 7 6 32 32 H 0.97005 * 120.00069 * 180.02562 * 15 14 12 33 33 H 1.07996 * 120.17527 * 359.97438 * 20 6 5 34 34 H 1.08002 * 120.01977 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.2021 0.0000 4 6 3.5755 1.2178 -0.0053 5 6 4.2856 0.0206 0.0000 6 6 5.7674 0.0327 -0.0006 7 6 6.4731 -0.7363 0.9312 8 6 7.8550 -0.7313 0.9392 9 6 8.5555 0.0328 0.0268 10 9 9.9064 0.0324 0.0401 11 6 7.8592 0.8138 -0.9192 12 6 8.5704 1.5974 -1.8559 13 1 9.5397 1.9986 -1.5989 14 6 8.0188 1.8536 -3.1159 15 7 8.4758 2.8421 -3.8415 16 14 6.6303 0.7845 -3.7626 17 1 5.3273 1.4307 -3.4629 18 1 6.7750 0.6199 -5.2313 19 1 6.6847 -0.5472 -3.1076 20 6 6.4542 0.8025 -0.9290 21 6 3.5880 -1.2010 0.0053 22 6 4.3050 -2.4405 0.0103 23 7 4.8738 -3.4238 0.0144 24 6 2.1922 -1.1969 0.0053 25 1 -0.3634 0.0045 1.0277 26 1 -0.3634 0.8876 -0.5177 27 1 -0.3633 -0.8922 -0.5099 28 1 1.6483 2.1334 -0.0004 29 1 4.1046 2.1593 -0.0092 30 1 5.9345 -1.3369 1.6492 31 1 8.3901 -1.3282 1.6629 32 1 8.0932 3.0199 -4.7149 33 1 5.9115 1.3931 -1.6523 34 1 1.6492 -2.1304 0.0090 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242592477.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:50 Heat of formation + Delta-G solvation = -1.551429 kcal Electronic energy + Delta-G solvation = -20531.973409 eV Core-core repulsion = 17307.680356 eV Total energy + Delta-G solvation = -3224.293054 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.40110 -40.93209 -39.15179 -37.52611 -35.80776 -34.30271 -32.62478 -32.25546 -30.92632 -27.45470 -27.05321 -24.90588 -23.94347 -22.97786 -21.75253 -19.67850 -18.92087 -18.41054 -17.45563 -17.09776 -16.61493 -16.41568 -16.14230 -15.45247 -15.22030 -15.15826 -14.87606 -14.57284 -14.24878 -14.16411 -14.06274 -13.91744 -13.80291 -13.51570 -13.23491 -12.84758 -12.79100 -12.63733 -12.38011 -12.21835 -12.04559 -11.79868 -11.71412 -11.11055 -9.97186 -9.90678 -9.78303 -9.04311 -9.00794 -6.64640 -0.33287 0.14747 0.56220 0.68214 1.17904 1.31366 1.39818 1.65502 1.96273 2.01743 2.38440 2.86246 2.90931 3.20134 3.59123 3.75722 3.94380 4.01529 4.09057 4.32915 4.37374 4.41455 4.53392 4.64827 4.80573 4.86085 5.01987 5.03152 5.07192 5.21324 5.33616 5.37851 5.43090 5.47850 5.58238 5.60150 5.72118 5.93529 5.94567 6.16581 6.46744 6.49044 6.60590 8.05646 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.016175 B = 0.006585 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.611887 B = 4250.748066 C = 5154.794684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.085 4.085 3 C -0.078 4.078 4 C -0.114 4.114 5 C -0.012 4.012 6 C -0.032 4.032 7 C -0.187 4.187 8 C -0.108 4.108 9 C -0.036 4.036 10 F -0.165 7.165 11 C 0.050 3.950 12 C -0.476 4.476 13 H 0.056 0.944 14 C 0.058 3.942 15 N -0.832 5.832 16 Si 0.950 3.050 17 H -0.234 1.234 18 H -0.270 1.270 19 H -0.266 1.266 20 C -0.199 4.199 21 C -0.038 4.038 22 C 0.273 3.727 23 N -0.459 5.459 24 C -0.065 4.065 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.164 0.836 29 H 0.136 0.864 30 H 0.124 0.876 31 H 0.134 0.866 32 H 0.300 0.700 33 H 0.119 0.881 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.138 -2.183 5.415 20.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.085 4.085 3 C -0.096 4.096 4 C -0.132 4.132 5 C -0.015 4.015 6 C -0.032 4.032 7 C -0.206 4.206 8 C -0.127 4.127 9 C -0.056 4.056 10 F -0.145 7.145 11 C 0.047 3.953 12 C -0.504 4.504 13 H 0.075 0.925 14 C -0.159 4.159 15 N -0.456 5.456 16 Si 0.772 3.228 17 H -0.158 1.158 18 H -0.196 1.196 19 H -0.191 1.191 20 C -0.218 4.218 21 C -0.042 4.042 22 C -0.041 4.041 23 N -0.135 5.135 24 C -0.085 4.085 25 H 0.105 0.895 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.182 0.818 29 H 0.154 0.846 30 H 0.142 0.858 31 H 0.151 0.849 32 H 0.111 0.889 33 H 0.136 0.864 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -19.143 -3.510 5.183 20.140 hybrid contribution 0.978 0.213 -0.425 1.088 sum -18.165 -3.297 4.758 19.065 Atomic orbital electron populations 1.20882 0.87701 1.04363 1.03819 1.20229 0.98198 0.91582 0.98500 1.21578 0.92672 0.99631 0.95719 1.21401 0.95235 0.96676 0.99891 1.18913 0.91010 0.93144 0.98440 1.18685 0.91988 0.96820 0.95741 1.20544 0.92425 1.04862 1.02801 1.20814 0.95029 0.98895 0.97951 1.18209 0.76152 1.06044 1.05157 1.91279 1.30603 1.96013 1.96560 1.17797 0.92959 0.91481 0.93101 1.19303 1.04750 1.27549 0.98847 0.92544 1.26699 0.98682 0.94418 0.96102 1.69694 1.39677 1.23947 1.12328 0.85722 0.79318 0.80338 0.77443 1.15770 1.19619 1.19072 1.21001 0.92234 1.05680 1.02856 1.16189 0.93246 0.84971 1.09745 1.25918 0.92603 0.92801 0.92802 1.81178 1.08668 1.13385 1.10234 1.21241 0.89851 1.00331 0.97062 0.89500 0.89824 0.90314 0.81842 0.84629 0.85827 0.84853 0.88937 0.86351 0.82605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.00 71.23 0.71 -0.16 16 2 C -0.08 -1.29 5.88 -19.87 -0.12 -1.41 16 3 C -0.08 -1.33 9.67 22.29 0.22 -1.11 16 4 C -0.11 -2.86 9.49 22.45 0.21 -2.65 16 5 C -0.01 -0.39 5.49 -19.81 -0.11 -0.50 16 6 C -0.03 -1.28 5.09 -20.10 -0.10 -1.38 16 7 C -0.19 -7.48 8.44 22.66 0.19 -7.28 16 8 C -0.11 -4.68 9.99 22.22 0.22 -4.45 16 9 C -0.04 -1.80 7.31 22.93 0.17 -1.63 16 10 F -0.17 -8.64 16.76 44.97 0.75 -7.89 16 11 C 0.05 2.61 5.11 -21.28 -0.11 2.51 16 12 C -0.48 -27.24 9.25 23.44 0.22 -27.02 16 13 H 0.06 3.55 7.97 -2.91 -0.02 3.53 16 14 C 0.06 3.08 5.40 85.24 0.46 3.54 16 15 N -0.83 -44.59 13.93 21.82 0.30 -44.29 16 16 Si 0.95 41.76 24.51 68.60 1.68 43.44 16 17 H -0.23 -9.08 6.71 99.48 0.67 -8.41 16 18 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 19 H -0.27 -12.62 6.86 99.48 0.68 -11.94 16 20 C -0.20 -9.09 6.62 22.96 0.15 -8.94 16 21 C -0.04 -1.06 5.74 -21.12 -0.12 -1.18 16 22 C 0.27 8.99 12.64 88.33 1.12 10.10 16 23 N -0.46 -16.99 18.54 19.00 0.35 -16.64 16 24 C -0.06 -1.23 9.39 22.52 0.21 -1.02 16 25 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 26 H 0.08 0.48 8.08 -2.39 -0.02 0.46 16 27 H 0.08 0.50 8.08 -2.39 -0.02 0.48 16 28 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 29 H 0.14 3.40 8.04 -2.91 -0.02 3.37 16 30 H 0.12 4.41 7.27 -2.91 -0.02 4.39 16 31 H 0.13 5.02 8.06 -2.91 -0.02 5.00 16 32 H 0.30 14.21 8.30 -92.70 -0.77 13.44 16 33 H 0.12 5.22 4.69 -2.91 -0.01 5.20 16 34 H 0.16 2.14 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -66.08 304.68 7.49 -58.59 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 1.08 Total: 9.38 kcal Atomic # 6 Polarization: -45.92 SS G_CDS: 3.32 Total: -42.59 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: 0.66 Total: -60.93 kcal Atomic # 9 Polarization: -8.64 SS G_CDS: 0.75 Total: -7.89 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 1.68 Total: 43.44 kcal Total: -66.08 7.49 -58.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242592477.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.042 kcal (2) G-P(sol) polarization free energy of solvation -66.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds