Wall clock time and date at job start Tue Mar 31 2020 05:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38514 * 119.79677 * 2 1 4 4 C 1.38041 * 120.43953 * 179.72400 * 3 2 1 5 5 C 1.39188 * 120.02510 * 0.55230 * 4 3 2 6 6 C 1.48216 * 120.20141 * 179.74298 * 5 4 3 7 7 C 1.39775 * 119.99443 * 129.72685 * 6 5 4 8 8 C 1.38599 * 120.34507 * 180.02562 * 7 6 5 9 9 F 1.35097 * 119.83373 * 179.97438 * 8 7 6 10 10 C 1.37951 * 120.33536 * 359.97438 * 8 7 6 11 11 C 1.40726 * 119.98878 * 0.02562 * 10 8 7 12 12 C 1.41432 * 120.16673 * 179.72610 * 11 10 8 13 13 H 1.08000 * 120.00221 * 335.24667 * 12 11 10 14 14 C 1.39932 * 119.99631 * 155.25127 * 12 11 10 15 15 N 1.30835 * 119.99754 * 342.29586 * 14 12 11 16 16 Si 1.86792 * 120.00011 * 162.29072 * 14 12 11 17 17 H 1.48506 * 109.47256 * 60.00165 * 16 14 12 18 18 H 1.48498 * 109.47409 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47469 * 300.00294 * 16 14 12 20 20 C 1.38837 * 119.99931 * 309.75444 * 6 5 4 21 21 C 1.40656 * 119.59337 * 359.47764 * 5 4 3 22 22 C 1.43210 * 120.21445 * 180.26886 * 21 5 4 23 23 N 4.80196 * 134.51927 * 180.02562 * 2 1 3 24 24 C 1.37928 * 119.79259 * 180.02562 * 2 1 3 25 25 H 1.09007 * 109.46707 * 269.97720 * 1 2 3 26 26 H 1.08992 * 109.47447 * 29.97258 * 1 2 3 27 27 H 1.09001 * 109.47338 * 149.98106 * 1 2 3 28 28 H 1.08003 * 119.77760 * 0.02711 * 3 2 1 29 29 H 1.08000 * 119.98603 * 180.27949 * 4 3 2 30 30 H 1.08001 * 119.83042 * 0.02562 * 7 6 5 31 31 H 1.08001 * 120.00695 * 180.02562 * 10 8 7 32 32 H 0.96998 * 119.99575 * 180.02562 * 15 14 12 33 33 H 1.08009 * 120.16995 * 359.97438 * 20 6 5 34 34 H 1.07995 * 120.01989 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1953 1.2020 0.0000 4 6 3.5756 1.2175 0.0057 5 6 4.2856 0.0203 0.0000 6 6 5.7677 0.0324 0.0003 7 6 6.4726 -0.7401 0.9277 8 6 7.8585 -0.7339 0.9349 9 9 8.5293 -1.4841 1.8361 10 6 8.5565 0.0346 0.0264 11 6 7.8611 0.8178 -0.9135 12 6 8.5728 1.6115 -1.8428 13 1 9.5744 1.9443 -1.6134 14 6 7.9793 1.9658 -3.0595 15 7 6.9382 1.3047 -3.4964 16 14 8.6732 3.3826 -4.0596 17 1 10.0837 3.0898 -4.4204 18 1 7.8715 3.5539 -5.2978 19 1 8.6166 4.6302 -3.2562 20 6 6.4558 0.8116 -0.9200 21 6 3.5879 -1.2010 -0.0006 22 6 4.3050 -2.4406 -0.0007 23 7 4.8739 -3.4239 -0.0015 24 6 2.1923 -1.1970 -0.0005 25 1 -0.3633 -0.0004 1.0278 26 1 -0.3634 0.8901 -0.5134 27 1 -0.3634 -0.8898 -0.5141 28 1 1.6484 2.1333 0.0004 29 1 4.1048 2.1589 0.0103 30 1 5.9344 -1.3451 1.6424 31 1 9.6365 0.0352 0.0365 32 1 6.5270 1.5501 -4.3400 33 1 5.9138 1.4096 -1.6378 34 1 1.6493 -2.1305 -0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242594084.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:16 Heat of formation + Delta-G solvation = -3.096769 kcal Electronic energy + Delta-G solvation = -20341.141108 eV Core-core repulsion = 17116.781044 eV Total energy + Delta-G solvation = -3224.360065 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.72183 -40.82864 -39.01746 -37.51783 -35.75004 -34.24098 -32.29496 -31.68553 -30.69624 -27.52844 -27.26743 -24.89293 -23.57627 -22.88413 -21.83361 -19.74948 -18.80557 -17.71299 -17.14116 -16.79499 -16.68917 -16.46287 -16.28046 -16.12382 -15.24358 -15.12022 -14.72493 -14.22634 -14.18871 -14.12582 -14.00615 -13.86414 -13.54437 -13.11754 -12.91493 -12.84187 -12.60909 -12.49392 -12.34148 -12.27872 -12.03190 -11.95333 -11.46111 -11.10362 -9.98820 -9.88525 -9.43523 -9.01327 -8.74511 -6.50983 -0.25292 0.23249 0.74737 0.88669 1.41131 1.49808 1.54506 1.66835 1.97953 2.19118 2.52943 2.90994 2.95156 3.46197 3.51205 3.86097 3.99836 4.09929 4.29626 4.38549 4.43569 4.52219 4.72160 4.83208 4.92400 4.98933 5.02879 5.06327 5.15289 5.24094 5.39052 5.47767 5.53518 5.58225 5.61815 5.82889 5.90381 5.98312 6.13520 6.47390 6.48266 6.76230 6.77887 8.21951 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.013552 B = 0.006252 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.562110 B = 4477.593955 C = 5926.853964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.088 4.088 3 C -0.076 4.076 4 C -0.112 4.112 5 C -0.001 4.001 6 C -0.028 4.028 7 C -0.264 4.264 8 C 0.107 3.893 9 F -0.165 7.165 10 C -0.279 4.279 11 C 0.104 3.896 12 C -0.484 4.484 13 H 0.083 0.917 14 C 0.042 3.958 15 N -0.810 5.810 16 Si 0.987 3.013 17 H -0.263 1.263 18 H -0.264 1.264 19 H -0.255 1.255 20 C -0.155 4.155 21 C -0.044 4.044 22 C 0.275 3.725 23 N -0.467 5.467 24 C -0.066 4.066 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.077 0.923 28 H 0.166 0.834 29 H 0.135 0.865 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.296 0.704 33 H 0.127 0.873 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.707 4.987 1.917 15.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.088 4.088 3 C -0.094 4.094 4 C -0.130 4.130 5 C -0.004 4.004 6 C -0.029 4.029 7 C -0.284 4.284 8 C 0.088 3.912 9 F -0.144 7.144 10 C -0.300 4.300 11 C 0.101 3.899 12 C -0.512 4.512 13 H 0.101 0.899 14 C -0.176 4.176 15 N -0.434 5.434 16 Si 0.807 3.193 17 H -0.188 1.188 18 H -0.188 1.188 19 H -0.178 1.178 20 C -0.174 4.174 21 C -0.047 4.047 22 C -0.039 4.039 23 N -0.144 5.144 24 C -0.086 4.086 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.183 0.817 29 H 0.153 0.847 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.107 0.893 33 H 0.145 0.855 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.973 3.383 1.744 14.482 hybrid contribution 1.150 0.214 -0.165 1.181 sum -12.824 3.597 1.579 13.412 Atomic orbital electron populations 1.20865 0.87603 1.04342 1.03752 1.20207 0.98208 0.91507 0.98923 1.21564 0.92592 0.99550 0.95693 1.21332 0.95148 0.96434 1.00044 1.18924 0.91133 0.93072 0.97279 1.18484 0.91799 0.97104 0.95474 1.20350 0.91338 1.10203 1.06503 1.17578 0.90495 0.93578 0.89542 1.91333 1.81191 1.75295 1.66567 1.21101 0.98907 1.06118 1.03850 1.17670 0.92598 0.89145 0.90487 1.19857 1.02268 1.28238 1.00801 0.89898 1.26799 0.94273 0.98234 0.98303 1.69838 1.18952 1.34663 1.19927 0.85172 0.79131 0.77769 0.77259 1.18782 1.18778 1.17849 1.21483 0.93805 1.02329 0.99821 1.16243 0.93329 0.85021 1.10143 1.26022 0.92447 0.92852 0.92549 1.81134 1.08734 1.13890 1.10602 1.21207 0.89742 1.00359 0.97336 0.89568 0.89669 0.90452 0.81671 0.84735 0.87873 0.87542 0.89335 0.85526 0.82910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.00 71.24 0.71 -0.42 16 2 C -0.09 -1.64 5.88 -19.87 -0.12 -1.75 16 3 C -0.08 -1.52 9.67 22.29 0.22 -1.30 16 4 C -0.11 -3.20 9.50 22.45 0.21 -2.99 16 5 C 0.00 -0.05 5.49 -19.81 -0.11 -0.16 16 6 C -0.03 -1.28 5.09 -20.11 -0.10 -1.38 16 7 C -0.26 -12.66 8.42 22.73 0.19 -12.47 16 8 C 0.11 5.44 7.28 22.29 0.16 5.60 16 9 F -0.16 -8.06 17.26 44.97 0.78 -7.29 16 10 C -0.28 -14.63 9.76 22.81 0.22 -14.41 16 11 C 0.10 5.52 5.57 -21.32 -0.12 5.40 16 12 C -0.48 -24.87 9.05 23.47 0.21 -24.66 16 13 H 0.08 4.11 7.91 -2.91 -0.02 4.08 16 14 C 0.04 1.95 5.14 85.25 0.44 2.38 16 15 N -0.81 -39.33 10.98 21.82 0.24 -39.09 16 16 Si 0.99 35.18 29.59 68.60 2.03 37.21 16 17 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 18 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 19 H -0.25 -8.76 7.11 99.48 0.71 -8.05 16 20 C -0.16 -7.73 8.15 22.97 0.19 -7.54 16 21 C -0.04 -1.46 5.74 -21.12 -0.12 -1.58 16 22 C 0.28 10.77 12.64 88.34 1.12 11.89 16 23 N -0.47 -20.30 18.54 19.01 0.35 -19.95 16 24 C -0.07 -1.55 9.39 22.52 0.21 -1.34 16 25 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16 27 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 28 H 0.17 2.07 8.06 -2.91 -0.02 2.04 16 29 H 0.13 3.79 8.04 -2.91 -0.02 3.77 16 30 H 0.10 4.76 7.26 -2.91 -0.02 4.74 16 31 H 0.11 5.36 8.06 -2.91 -0.02 5.33 16 32 H 0.30 12.83 8.30 -92.71 -0.77 12.06 16 33 H 0.13 6.28 6.16 -2.91 -0.02 6.26 16 34 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 Total: -1.00 -63.42 310.58 7.85 -55.57 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: 1.14 Total: 18.26 kcal Atomic # 6 Polarization: -48.02 SS G_CDS: 3.32 Total: -44.71 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: 0.59 Total: -59.04 kcal Atomic # 9 Polarization: -8.06 SS G_CDS: 0.78 Total: -7.29 kcal Atomic # 14 Polarization: 35.18 SS G_CDS: 2.03 Total: 37.21 kcal Total: -63.42 7.85 -55.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242594084.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.469 kcal (2) G-P(sol) polarization free energy of solvation -63.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds