Wall clock time and date at job start Tue Mar 31 2020 05:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36614 * 120.00275 * 2 1 4 4 C 1.39794 * 120.00447 * 180.24981 * 3 2 1 5 5 C 1.47733 * 119.99630 * 179.71826 * 4 3 2 6 6 C 1.39139 * 120.32793 * 309.74901 * 5 4 3 7 7 C 1.38363 * 119.95350 * 179.97438 * 6 5 4 8 8 F 1.35096 * 119.69386 * 179.97438 * 7 6 5 9 9 C 1.39244 * 120.62033 * 0.02562 * 7 6 5 10 10 C 1.36343 * 120.66626 * 0.02562 * 9 7 6 11 11 C 1.40811 * 120.02401 * 359.97438 * 10 9 7 12 12 C 1.40753 * 120.30382 * 180.27611 * 11 10 9 13 13 H 1.07999 * 120.00024 * 149.11364 * 12 11 10 14 14 C 1.40103 * 119.99836 * 329.11730 * 12 11 10 15 15 N 1.30759 * 119.99859 * 162.55056 * 14 12 11 16 16 Si 1.86800 * 120.00270 * 342.55272 * 14 12 11 17 17 H 1.48497 * 109.47381 * 95.36768 * 16 14 12 18 18 H 1.48507 * 109.47196 * 215.37066 * 16 14 12 19 19 H 1.48497 * 109.46983 * 335.36560 * 16 14 12 20 20 C 1.39833 * 120.00580 * 359.44436 * 4 3 2 21 21 C 1.36575 * 120.00514 * 0.29978 * 20 4 3 22 22 C 1.39828 * 120.00117 * 179.71371 * 2 1 3 23 23 C 1.43198 * 120.00200 * 0.05133 * 22 2 1 24 24 N 3.48442 * 80.34118 * 179.74649 * 2 1 3 25 25 H 1.08994 * 109.47154 * 270.28067 * 1 2 3 26 26 H 1.09002 * 109.46759 * 30.28275 * 1 2 3 27 27 H 1.09004 * 109.46732 * 150.27350 * 1 2 3 28 28 H 1.08005 * 119.99523 * 359.96864 * 3 2 1 29 29 H 1.07996 * 120.02427 * 359.95446 * 6 5 4 30 30 H 1.07992 * 119.66595 * 180.02562 * 9 7 6 31 31 H 1.08001 * 119.98383 * 180.02562 * 10 9 7 32 32 H 0.97006 * 120.00446 * 179.97438 * 15 14 12 33 33 H 1.08003 * 120.00064 * 180.26968 * 20 4 3 34 34 H 1.08003 * 120.00554 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1902 1.1831 0.0000 4 6 3.5881 1.1831 -0.0053 5 6 4.3266 2.4626 -0.0116 6 6 4.0093 3.4525 -0.9365 7 6 4.7056 4.6481 -0.9351 8 9 4.3935 5.6054 -1.8358 9 6 5.7259 4.8736 -0.0147 10 6 6.0585 3.9207 0.9021 11 6 5.3679 2.6939 0.9254 12 6 5.7025 1.7084 1.8730 13 1 4.9436 1.0345 2.2423 14 6 7.0201 1.6017 2.3372 15 7 7.2741 0.9433 3.4381 16 14 8.4139 2.3999 1.3836 17 1 8.7038 3.7383 1.9578 18 1 9.6274 1.5486 1.4749 19 1 8.0188 2.5471 -0.0403 20 6 4.2875 -0.0277 0.0012 21 6 3.6049 -1.2107 0.0065 22 6 2.2062 -1.2109 0.0061 23 6 1.4903 -2.4511 0.0111 24 7 0.9224 -3.4350 0.0152 25 1 -0.3633 0.0050 1.0276 26 1 -0.3633 0.8875 -0.5182 27 1 -0.3633 -0.8925 -0.5096 28 1 1.6501 2.1184 -0.0005 29 1 3.2202 3.2875 -1.6551 30 1 6.2591 5.8126 -0.0271 31 1 6.8515 4.1075 1.6112 32 1 8.1864 0.8691 3.7594 33 1 5.3675 -0.0276 0.0015 34 1 4.1451 -2.1459 0.0119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242767689.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:56 Heat of formation + Delta-G solvation = 11.358614 kcal Electronic energy + Delta-G solvation = -20412.397952 eV Core-core repulsion = 17188.664720 eV Total energy + Delta-G solvation = -3223.733232 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.77106 -39.54000 -37.79540 -36.07888 -33.87632 -32.91926 -31.83478 -30.45306 -28.94747 -26.91387 -25.30676 -23.58688 -21.77312 -21.34375 -20.13860 -18.32183 -17.77005 -16.78196 -15.70467 -15.42447 -14.86054 -14.59074 -14.49932 -14.13722 -14.09318 -13.94796 -13.30867 -12.97683 -12.95042 -12.88788 -12.66200 -12.54140 -12.29533 -12.24091 -11.79100 -11.56275 -11.32500 -11.09051 -10.84894 -10.66878 -10.49405 -10.28884 -9.84088 -9.40776 -8.69043 -8.46337 -7.84044 -7.61072 -7.25029 -4.73725 1.00426 1.79774 2.19564 2.30294 2.88901 2.90901 3.01941 3.11001 3.31113 3.72895 4.10587 4.21176 4.26155 4.95239 5.01349 5.10359 5.25513 5.46854 5.59045 5.66304 5.70807 5.82546 5.86351 5.87977 5.96634 6.19575 6.31710 6.40285 6.47751 6.63537 6.73612 6.82814 6.94435 7.03343 7.13563 7.26939 7.34719 7.53665 7.72093 7.78800 8.03531 8.30039 8.45064 9.74260 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.014716 B = 0.006444 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.181450 B = 4343.786243 C = 5881.094279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.036 4.036 3 C -0.132 4.132 4 C 0.055 3.945 5 C -0.164 4.164 6 C -0.078 4.078 7 C -0.050 4.050 8 F -0.169 7.169 9 C -0.094 4.094 10 C -0.208 4.208 11 C 0.101 3.899 12 C -0.424 4.424 13 H 0.102 0.898 14 C 0.083 3.917 15 N -0.784 5.784 16 Si 0.904 3.096 17 H -0.267 1.267 18 H -0.286 1.286 19 H -0.240 1.240 20 C -0.102 4.102 21 C -0.066 4.066 22 C -0.070 4.070 23 C 0.272 3.728 24 N -0.449 5.449 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.127 0.873 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.291 0.709 33 H 0.140 0.860 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.193 1.199 -4.440 5.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.039 4.039 3 C -0.151 4.151 4 C 0.054 3.946 5 C -0.166 4.166 6 C -0.096 4.096 7 C -0.070 4.070 8 F -0.148 7.148 9 C -0.113 4.113 10 C -0.227 4.227 11 C 0.098 3.902 12 C -0.450 4.450 13 H 0.120 0.880 14 C -0.139 4.139 15 N -0.406 5.406 16 Si 0.730 3.270 17 H -0.192 1.192 18 H -0.212 1.212 19 H -0.163 1.163 20 C -0.120 4.120 21 C -0.086 4.086 22 C -0.074 4.074 23 C -0.042 4.042 24 N -0.125 5.125 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.102 0.898 33 H 0.157 0.843 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.942 -0.458 -4.223 5.795 hybrid contribution 0.989 0.906 -0.226 1.360 sum -2.953 0.448 -4.450 5.359 Atomic orbital electron populations 1.20862 0.91288 1.02725 1.02662 1.19423 0.95498 0.91590 0.97346 1.20848 0.93571 0.97039 1.03597 1.18925 0.91854 0.92936 0.90926 1.18276 1.04443 0.93306 1.00573 1.20662 0.98453 0.91834 0.98700 1.17061 1.04575 0.88801 0.96560 1.91318 1.93166 1.63435 1.66889 1.20437 0.96450 0.99216 0.95155 1.20672 1.05143 0.94493 1.02433 1.17635 0.90174 0.91997 0.90406 1.19558 0.95745 1.13545 1.16191 0.87999 1.26273 1.00899 0.93255 0.93488 1.69645 1.23741 1.30844 1.16399 0.86394 0.78809 0.78817 0.82993 1.19241 1.21248 1.16291 1.21089 1.01250 0.90591 0.99048 1.20769 0.91456 0.98950 0.97456 1.15896 0.92293 0.86070 1.13094 1.25830 0.92803 0.92775 0.92756 1.81181 1.09334 1.11262 1.10741 0.90786 0.90857 0.92050 0.85479 0.87086 0.87494 0.87086 0.89844 0.84251 0.85697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 9.60 36.01 0.35 -1.02 16 2 C -0.04 -0.51 5.88 -104.61 -0.61 -1.13 16 3 C -0.13 -2.04 9.10 -39.59 -0.36 -2.40 16 4 C 0.05 0.96 4.94 -104.84 -0.52 0.44 16 5 C -0.16 -3.25 5.52 -104.26 -0.58 -3.83 16 6 C -0.08 -1.47 9.48 -39.20 -0.37 -1.85 16 7 C -0.05 -1.00 7.31 -39.16 -0.29 -1.29 16 8 F -0.17 -3.30 17.26 2.25 0.04 -3.26 16 9 C -0.09 -1.86 9.94 -39.89 -0.40 -2.25 16 10 C -0.21 -4.38 7.10 -39.29 -0.28 -4.66 16 11 C 0.10 2.19 5.08 -106.55 -0.54 1.65 16 12 C -0.42 -9.63 7.49 -37.93 -0.28 -9.91 16 13 H 0.10 2.46 7.03 -52.49 -0.37 2.09 16 14 C 0.08 1.87 5.41 -17.31 -0.09 1.78 16 15 N -0.78 -18.28 13.92 55.56 0.77 -17.50 16 16 Si 0.90 17.96 24.52 -169.99 -4.17 13.79 16 17 H -0.27 -5.18 6.73 56.52 0.38 -4.80 16 18 H -0.29 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.24 -4.88 6.85 56.52 0.39 -4.49 16 20 C -0.10 -1.72 8.03 -39.59 -0.32 -2.04 16 21 C -0.07 -0.99 9.70 -39.57 -0.38 -1.37 16 22 C -0.07 -1.04 5.74 -106.77 -0.61 -1.65 16 23 C 0.27 4.17 13.78 -22.47 -0.31 3.86 16 24 N -0.45 -7.49 18.54 41.84 0.78 -6.71 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 27 H 0.06 0.71 7.08 -51.93 -0.37 0.34 16 28 H 0.13 1.78 8.04 -52.48 -0.42 1.36 16 29 H 0.11 1.87 8.04 -52.49 -0.42 1.44 16 30 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.11 2.30 4.79 -52.49 -0.25 2.05 16 32 H 0.29 6.14 8.30 -40.82 -0.34 5.80 16 33 H 0.14 2.45 7.30 -52.48 -0.38 2.07 16 34 H 0.13 1.64 8.06 -52.48 -0.42 1.21 16 LS Contribution 301.93 15.07 4.55 4.55 Total: -1.00 -24.02 301.93 -6.70 -30.72 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -3.07 Total: 4.08 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -5.60 Total: -25.67 kcal Atomic # 7 Polarization: -25.76 SS G_CDS: 1.55 Total: -24.21 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.04 Total: -3.26 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -4.17 Total: 13.79 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -24.02 -6.70 -30.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242767689.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.077 kcal (2) G-P(sol) polarization free energy of solvation -24.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds