Wall clock time and date at job start Tue Mar 31 2020 05:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36614 * 120.00275 * 2 1 4 4 C 1.39794 * 120.00447 * 180.24981 * 3 2 1 5 5 C 1.47733 * 119.99630 * 179.71826 * 4 3 2 6 6 C 1.39139 * 120.32793 * 309.74901 * 5 4 3 7 7 C 1.38363 * 119.95350 * 179.97438 * 6 5 4 8 8 F 1.35096 * 119.69386 * 179.97438 * 7 6 5 9 9 C 1.39244 * 120.62033 * 0.02562 * 7 6 5 10 10 C 1.36343 * 120.66626 * 0.02562 * 9 7 6 11 11 C 1.40811 * 120.02401 * 359.97438 * 10 9 7 12 12 C 1.40753 * 120.30382 * 180.27611 * 11 10 9 13 13 H 1.07999 * 120.00024 * 149.11364 * 12 11 10 14 14 C 1.40103 * 119.99836 * 329.11730 * 12 11 10 15 15 N 1.30759 * 119.99859 * 162.55056 * 14 12 11 16 16 Si 1.86800 * 120.00270 * 342.55272 * 14 12 11 17 17 H 1.48497 * 109.47381 * 95.36768 * 16 14 12 18 18 H 1.48507 * 109.47196 * 215.37066 * 16 14 12 19 19 H 1.48497 * 109.46983 * 335.36560 * 16 14 12 20 20 C 1.39833 * 120.00580 * 359.44436 * 4 3 2 21 21 C 1.36575 * 120.00514 * 0.29978 * 20 4 3 22 22 C 1.39828 * 120.00117 * 179.71371 * 2 1 3 23 23 C 1.43198 * 120.00200 * 0.05133 * 22 2 1 24 24 N 3.48442 * 80.34118 * 179.74649 * 2 1 3 25 25 H 1.08994 * 109.47154 * 270.28067 * 1 2 3 26 26 H 1.09002 * 109.46759 * 30.28275 * 1 2 3 27 27 H 1.09004 * 109.46732 * 150.27350 * 1 2 3 28 28 H 1.08005 * 119.99523 * 359.96864 * 3 2 1 29 29 H 1.07996 * 120.02427 * 359.95446 * 6 5 4 30 30 H 1.07992 * 119.66595 * 180.02562 * 9 7 6 31 31 H 1.08001 * 119.98383 * 180.02562 * 10 9 7 32 32 H 0.97006 * 120.00446 * 179.97438 * 15 14 12 33 33 H 1.08003 * 120.00064 * 180.26968 * 20 4 3 34 34 H 1.08003 * 120.00554 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1902 1.1831 0.0000 4 6 3.5881 1.1831 -0.0053 5 6 4.3266 2.4626 -0.0116 6 6 4.0093 3.4525 -0.9365 7 6 4.7056 4.6481 -0.9351 8 9 4.3935 5.6054 -1.8358 9 6 5.7259 4.8736 -0.0147 10 6 6.0585 3.9207 0.9021 11 6 5.3679 2.6939 0.9254 12 6 5.7025 1.7084 1.8730 13 1 4.9436 1.0345 2.2423 14 6 7.0201 1.6017 2.3372 15 7 7.2741 0.9433 3.4381 16 14 8.4139 2.3999 1.3836 17 1 8.7038 3.7383 1.9578 18 1 9.6274 1.5486 1.4749 19 1 8.0188 2.5471 -0.0403 20 6 4.2875 -0.0277 0.0012 21 6 3.6049 -1.2107 0.0065 22 6 2.2062 -1.2109 0.0061 23 6 1.4903 -2.4511 0.0111 24 7 0.9224 -3.4350 0.0152 25 1 -0.3633 0.0050 1.0276 26 1 -0.3633 0.8875 -0.5182 27 1 -0.3633 -0.8925 -0.5096 28 1 1.6501 2.1184 -0.0005 29 1 3.2202 3.2875 -1.6551 30 1 6.2591 5.8126 -0.0271 31 1 6.8515 4.1075 1.6112 32 1 8.1864 0.8691 3.7594 33 1 5.3675 -0.0276 0.0015 34 1 4.1451 -2.1459 0.0119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242767689.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:56 Heat of formation + Delta-G solvation = 2.546280 kcal Electronic energy + Delta-G solvation = -20412.780084 eV Core-core repulsion = 17188.664720 eV Total energy + Delta-G solvation = -3224.115364 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.34860 -40.85266 -39.29112 -37.38398 -35.52435 -34.17092 -33.14919 -32.06606 -30.38097 -28.01438 -26.89872 -25.00128 -23.28251 -22.67118 -21.58387 -19.63425 -19.38575 -18.27682 -17.26898 -16.83996 -16.30366 -16.08616 -15.97947 -15.48726 -15.33483 -15.27923 -14.92173 -14.48962 -14.16871 -14.06230 -13.97800 -13.86262 -13.81070 -13.44841 -13.13820 -12.87386 -12.72505 -12.59033 -12.35150 -12.07125 -11.96266 -11.79498 -11.44571 -11.01498 -10.08080 -9.70500 -9.39254 -9.11015 -8.91757 -6.43649 -0.29785 0.57166 0.61919 0.74111 1.30904 1.43042 1.51718 1.63883 2.01827 2.11504 2.50253 2.94055 2.98200 3.39670 3.72574 3.88841 3.95643 4.04699 4.23743 4.32946 4.50400 4.61266 4.69497 4.74551 4.79438 4.84041 4.90071 5.06146 5.19715 5.24390 5.29581 5.48530 5.50712 5.58642 5.64816 5.74366 5.95101 6.01777 6.18065 6.34325 6.47564 6.66407 6.77239 8.12824 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.014716 B = 0.006444 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.181450 B = 4343.786243 C = 5881.094279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.029 4.029 3 C -0.127 4.127 4 C 0.031 3.969 5 C -0.157 4.157 6 C -0.080 4.080 7 C -0.049 4.049 8 F -0.164 7.164 9 C -0.099 4.099 10 C -0.222 4.222 11 C 0.087 3.913 12 C -0.443 4.443 13 H 0.076 0.924 14 C 0.057 3.943 15 N -0.826 5.826 16 Si 0.947 3.053 17 H -0.259 1.259 18 H -0.279 1.279 19 H -0.248 1.248 20 C -0.113 4.113 21 C -0.062 4.062 22 C -0.068 4.068 23 C 0.288 3.712 24 N -0.468 5.468 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.061 0.939 28 H 0.145 0.855 29 H 0.137 0.863 30 H 0.130 0.870 31 H 0.111 0.889 32 H 0.296 0.704 33 H 0.125 0.875 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.429 1.887 -5.743 7.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.031 4.031 3 C -0.145 4.145 4 C 0.030 3.970 5 C -0.158 4.158 6 C -0.099 4.099 7 C -0.069 4.069 8 F -0.144 7.144 9 C -0.118 4.118 10 C -0.241 4.241 11 C 0.084 3.916 12 C -0.470 4.470 13 H 0.094 0.906 14 C -0.161 4.161 15 N -0.450 5.450 16 Si 0.771 3.229 17 H -0.184 1.184 18 H -0.206 1.206 19 H -0.172 1.172 20 C -0.131 4.131 21 C -0.083 4.083 22 C -0.072 4.072 23 C -0.025 4.025 24 N -0.145 5.145 25 H 0.102 0.898 26 H 0.114 0.886 27 H 0.080 0.920 28 H 0.162 0.838 29 H 0.155 0.845 30 H 0.148 0.852 31 H 0.129 0.871 32 H 0.107 0.893 33 H 0.143 0.857 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.183 0.236 -5.531 7.583 hybrid contribution 1.190 0.708 0.052 1.386 sum -3.992 0.944 -5.478 6.844 Atomic orbital electron populations 1.20935 0.88957 1.03893 1.03628 1.19703 0.97093 0.90721 0.95606 1.20976 0.92520 0.98252 1.02793 1.18978 0.92970 0.92188 0.92870 1.18555 1.03396 0.94285 0.99588 1.20911 0.98940 0.91240 0.98812 1.17281 1.04266 0.89063 0.96240 1.91333 1.93086 1.63290 1.66663 1.20668 0.96548 0.99880 0.94665 1.20744 1.05545 0.94660 1.03141 1.17830 0.91105 0.92031 0.90659 1.19383 0.95627 1.14255 1.17777 0.90561 1.26745 1.02153 0.93450 0.93771 1.69672 1.24449 1.33155 1.17768 0.85747 0.77134 0.78629 0.81432 1.18391 1.20609 1.17176 1.21004 1.00725 0.91293 1.00078 1.20897 0.91784 0.99029 0.96564 1.15987 0.92162 0.86309 1.12698 1.25732 0.92248 0.92439 0.92115 1.81208 1.10071 1.11790 1.11397 0.89809 0.88637 0.91985 0.83760 0.84531 0.85190 0.87137 0.89287 0.85724 0.84018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.32 9.60 71.24 0.68 -1.63 16 2 C -0.03 -0.74 5.88 -19.86 -0.12 -0.86 16 3 C -0.13 -3.64 9.10 22.27 0.20 -3.43 16 4 C 0.03 1.06 4.94 -20.01 -0.10 0.96 16 5 C -0.16 -6.07 5.52 -19.63 -0.11 -6.18 16 6 C -0.08 -2.88 9.48 22.52 0.21 -2.67 16 7 C -0.05 -1.84 7.31 22.54 0.16 -1.67 16 8 F -0.16 -5.97 17.26 44.97 0.78 -5.19 16 9 C -0.10 -3.75 9.94 22.07 0.22 -3.53 16 10 C -0.22 -9.20 7.10 22.46 0.16 -9.04 16 11 C 0.09 3.77 5.08 -21.11 -0.11 3.67 16 12 C -0.44 -20.75 7.49 23.34 0.17 -20.58 16 13 H 0.08 3.87 7.03 -2.91 -0.02 3.85 16 14 C 0.06 2.63 5.41 85.31 0.46 3.09 16 15 N -0.83 -39.82 13.92 21.85 0.30 -39.51 16 16 Si 0.95 37.19 24.52 68.60 1.68 38.87 16 17 H -0.26 -9.71 6.73 99.48 0.67 -9.04 16 18 H -0.28 -10.55 7.11 99.48 0.71 -9.84 16 19 H -0.25 -9.95 6.85 99.48 0.68 -9.27 16 20 C -0.11 -3.83 8.03 22.27 0.18 -3.65 16 21 C -0.06 -1.83 9.70 22.28 0.22 -1.61 16 22 C -0.07 -1.90 5.74 -21.25 -0.12 -2.02 16 23 C 0.29 8.29 13.78 88.33 1.22 9.51 16 24 N -0.47 -14.82 18.54 19.00 0.35 -14.46 16 25 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 26 H 0.09 1.49 8.08 -2.39 -0.02 1.47 16 27 H 0.06 1.24 7.08 -2.39 -0.02 1.22 16 28 H 0.14 3.59 8.04 -2.91 -0.02 3.57 16 29 H 0.14 4.15 8.04 -2.91 -0.02 4.13 16 30 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 31 H 0.11 4.53 4.79 -2.91 -0.01 4.52 16 32 H 0.30 12.92 8.30 -92.70 -0.77 12.15 16 33 H 0.12 4.55 7.30 -2.91 -0.02 4.53 16 34 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -50.88 301.93 7.54 -43.35 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 1.08 Total: 16.58 kcal Atomic # 6 Polarization: -42.97 SS G_CDS: 3.34 Total: -39.63 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: 0.66 Total: -53.98 kcal Atomic # 9 Polarization: -5.97 SS G_CDS: 0.78 Total: -5.19 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 1.68 Total: 38.87 kcal Total: -50.88 7.54 -43.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242767689.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.892 kcal (2) G-P(sol) polarization free energy of solvation -50.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds