Wall clock time and date at job start Tue Mar 31 2020 05:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37622 * 120.06646 * 2 1 4 4 C 1.39769 * 119.88099 * 180.24811 * 3 2 1 5 5 C 1.47864 * 119.99137 * 179.72750 * 4 3 2 6 6 C 1.40091 * 119.86547 * 179.72999 * 5 4 3 7 7 C 1.36156 * 120.17788 * 180.02562 * 6 5 4 8 8 C 1.40978 * 119.90735 * 0.02562 * 7 6 5 9 9 C 1.40892 * 120.13106 * 179.97438 * 8 7 6 10 10 H 1.07996 * 119.99934 * 205.38913 * 9 8 7 11 11 C 1.40061 * 119.99582 * 25.38580 * 9 8 7 12 12 N 1.30774 * 120.00348 * 26.57670 * 11 9 8 13 13 Si 1.86805 * 120.00019 * 206.56721 * 11 9 8 14 14 H 1.48493 * 109.47509 * 180.02562 * 13 11 9 15 15 H 1.48497 * 109.47262 * 300.00760 * 13 11 9 16 16 H 1.48502 * 109.46739 * 60.00345 * 13 11 9 17 17 C 1.41195 * 119.73886 * 0.26042 * 8 7 6 18 18 F 1.35100 * 120.09282 * 179.74169 * 17 8 7 19 19 C 1.36547 * 119.81381 * 359.46445 * 17 8 7 20 20 C 1.39763 * 120.01573 * 359.44697 * 4 3 2 21 21 C 1.36554 * 120.13441 * 0.30097 * 20 4 3 22 22 C 1.39831 * 120.11966 * 359.97106 * 21 20 4 23 23 C 1.43201 * 120.01293 * 180.02562 * 22 21 20 24 24 N 3.48448 * 80.41168 * 179.72244 * 2 1 3 25 25 H 1.08996 * 109.47410 * 270.27938 * 1 2 3 26 26 H 1.09004 * 109.47271 * 30.27645 * 1 2 3 27 27 H 1.08998 * 109.47232 * 150.27820 * 1 2 3 28 28 H 1.08000 * 120.05891 * 359.97438 * 3 2 1 29 29 H 1.07992 * 119.91075 * 0.02562 * 6 5 4 30 30 H 1.08006 * 120.04771 * 179.97438 * 7 6 5 31 31 H 0.96995 * 120.00079 * 5.87897 * 12 11 9 32 32 H 1.08004 * 119.95280 * 180.27423 * 19 17 8 33 33 H 1.08003 * 119.93048 * 180.27296 * 20 4 3 34 34 H 1.08001 * 119.93933 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1910 0.0000 4 6 3.5942 1.1865 -0.0052 5 6 4.3374 2.4648 -0.0114 6 6 5.7383 2.4572 -0.0109 7 6 6.4291 3.6305 -0.0160 8 6 5.7327 4.8562 -0.0211 9 6 6.4427 6.0731 -0.0259 10 1 5.9850 6.9669 0.3714 11 6 7.7423 6.1235 -0.5457 12 7 8.1147 5.2655 -1.4597 13 14 8.9437 7.4163 0.0664 14 1 10.2421 7.2581 -0.6366 15 1 8.3958 8.7695 -0.2054 16 1 9.1481 7.2496 1.5278 17 6 4.3207 4.8596 -0.0155 18 9 3.6461 6.0301 -0.0151 19 6 3.6390 3.6764 -0.0161 20 6 4.2894 -0.0259 0.0012 21 6 3.6059 -1.2081 0.0064 22 6 2.2076 -1.2102 0.0060 23 6 1.4932 -2.4512 0.0120 24 7 0.9266 -3.4358 0.0166 25 1 -0.3634 0.0050 1.0276 26 1 -0.3634 0.8875 -0.5181 27 1 -0.3633 -0.8924 -0.5095 28 1 1.6585 2.1275 -0.0004 29 1 6.2717 1.5182 -0.0065 30 1 7.5091 3.6222 -0.0152 31 1 7.4683 4.6501 -1.8393 32 1 2.5590 3.6764 -0.0163 33 1 5.3694 -0.0277 0.0016 34 1 4.1464 -2.1431 0.0110 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242768707.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:21 Heat of formation + Delta-G solvation = 2.748661 kcal Electronic energy + Delta-G solvation = -19877.192941 eV Core-core repulsion = 16653.086353 eV Total energy + Delta-G solvation = -3224.106588 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.54384 -39.58686 -37.80712 -36.24041 -34.59144 -32.82202 -31.63301 -29.69461 -29.05082 -27.03227 -25.78322 -23.22557 -22.16360 -20.95015 -20.30829 -18.67530 -18.21927 -16.43655 -15.80992 -15.28694 -14.78634 -14.54917 -14.38632 -14.24373 -14.21452 -13.98231 -13.28418 -13.07802 -13.04080 -12.78998 -12.65101 -12.58290 -12.29839 -12.15349 -11.87523 -11.49142 -11.43668 -11.11903 -10.93677 -10.73748 -10.60966 -10.09053 -9.90543 -9.45048 -8.90157 -8.65800 -7.99632 -7.71906 -7.44077 -4.80245 0.80446 1.60108 2.28810 2.48694 2.79723 2.93975 2.97742 3.16147 3.30191 3.70741 3.98210 4.12318 4.32661 4.83539 4.91888 5.04517 5.12163 5.40378 5.54867 5.55937 5.64798 5.69776 5.72086 5.79071 5.96496 6.16929 6.22667 6.42949 6.47503 6.58950 6.62431 6.80333 6.96840 7.01950 7.24786 7.30474 7.41309 7.56878 7.61509 7.63840 7.81202 8.22526 8.36164 9.54604 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.034726 B = 0.003674 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.125695 B = 7620.021129 C = 8312.823563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.020 4.020 3 C -0.155 4.155 4 C 0.065 3.935 5 C -0.212 4.212 6 C -0.051 4.051 7 C -0.213 4.213 8 C 0.075 3.925 9 C -0.470 4.470 10 H 0.089 0.911 11 C 0.035 3.965 12 N -0.760 5.760 13 Si 1.068 2.932 14 H -0.269 1.269 15 H -0.270 1.270 16 H -0.269 1.269 17 C -0.033 4.033 18 F -0.161 7.161 19 C -0.076 4.076 20 C -0.155 4.155 21 C -0.050 4.050 22 C -0.093 4.093 23 C 0.272 3.728 24 N -0.452 5.452 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.129 0.871 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.305 0.695 32 H 0.109 0.891 33 H 0.130 0.870 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.504 -3.495 1.784 5.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.022 4.022 3 C -0.173 4.173 4 C 0.064 3.936 5 C -0.214 4.214 6 C -0.069 4.069 7 C -0.233 4.233 8 C 0.070 3.930 9 C -0.495 4.495 10 H 0.108 0.892 11 C -0.191 4.191 12 N -0.380 5.380 13 Si 0.890 3.110 14 H -0.193 1.193 15 H -0.196 1.196 16 H -0.194 1.194 17 C -0.053 4.053 18 F -0.140 7.140 19 C -0.095 4.095 20 C -0.174 4.174 21 C -0.070 4.070 22 C -0.097 4.097 23 C -0.041 4.041 24 N -0.128 5.128 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.146 0.854 29 H 0.122 0.878 30 H 0.133 0.867 31 H 0.119 0.881 32 H 0.127 0.873 33 H 0.147 0.853 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.823 -4.498 1.586 5.542 hybrid contribution -1.505 -0.009 0.093 1.508 sum -4.328 -4.507 1.679 6.470 Atomic orbital electron populations 1.20879 0.91254 1.02922 1.02690 1.19705 0.95440 0.91521 0.95563 1.20975 0.93564 0.96983 1.05780 1.19079 0.92322 0.92835 0.89371 1.17685 0.92399 0.89930 1.21348 1.20531 0.92758 0.97136 0.96498 1.20667 0.99126 0.91249 1.12209 1.17803 0.89952 0.94279 0.90927 1.20869 1.00108 0.96703 1.31841 0.89245 1.27368 0.98414 1.00116 0.93207 1.70452 1.40519 1.12440 1.14623 0.83573 0.75466 0.74505 0.77487 1.19310 1.19554 1.19411 1.17305 0.90090 0.80274 1.17629 1.91303 1.80113 1.47229 1.95336 1.20405 0.98345 0.91233 0.99487 1.20834 1.00317 0.91128 1.05075 1.20654 0.91635 0.98536 0.96200 1.15761 0.92192 0.86063 1.15659 1.25807 0.92883 0.92750 0.92698 1.81190 1.09172 1.11308 1.11135 0.90701 0.90728 0.91921 0.85355 0.87799 0.86684 0.88050 0.87285 0.85262 0.85880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.61 36.01 0.35 -0.97 16 2 C -0.02 -0.26 5.91 -104.25 -0.62 -0.88 16 3 C -0.15 -2.27 9.07 -39.23 -0.36 -2.62 16 4 C 0.06 1.06 5.88 -104.82 -0.62 0.44 16 5 C -0.21 -4.06 5.90 -104.66 -0.62 -4.67 16 6 C -0.05 -0.99 9.35 -39.64 -0.37 -1.36 16 7 C -0.21 -4.70 7.92 -39.29 -0.31 -5.01 16 8 C 0.07 1.77 5.30 -106.73 -0.57 1.21 16 9 C -0.47 -11.21 8.68 -37.89 -0.33 -11.54 16 10 H 0.09 2.12 7.80 -52.49 -0.41 1.71 16 11 C 0.03 0.78 4.90 -17.32 -0.08 0.69 16 12 N -0.76 -17.66 12.31 55.55 0.68 -16.97 16 13 Si 1.07 18.83 30.01 -169.99 -5.10 13.73 16 14 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 15 H -0.27 -4.57 7.11 56.52 0.40 -4.17 16 16 H -0.27 -4.58 7.11 56.52 0.40 -4.18 16 17 C -0.03 -0.76 7.26 -39.07 -0.28 -1.04 16 18 F -0.16 -3.72 16.70 2.25 0.04 -3.68 16 19 C -0.08 -1.52 9.33 -39.59 -0.37 -1.89 16 20 C -0.16 -2.23 9.36 -39.62 -0.37 -2.60 16 21 C -0.05 -0.65 9.69 -39.59 -0.38 -1.03 16 22 C -0.09 -1.26 5.74 -106.78 -0.61 -1.87 16 23 C 0.27 3.87 13.78 -22.47 -0.31 3.56 16 24 N -0.45 -7.08 18.54 41.84 0.78 -6.31 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16 27 H 0.06 0.69 7.08 -51.93 -0.37 0.32 16 28 H 0.13 1.76 6.16 -52.49 -0.32 1.44 16 29 H 0.10 1.74 6.15 -52.49 -0.32 1.42 16 30 H 0.12 2.57 6.52 -52.48 -0.34 2.23 16 31 H 0.31 7.25 6.79 -40.82 -0.28 6.97 16 32 H 0.11 1.93 6.16 -52.48 -0.32 1.60 16 33 H 0.13 1.70 6.15 -52.48 -0.32 1.38 16 34 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 303.64 15.07 4.58 4.58 Total: -1.00 -24.70 303.64 -7.63 -32.33 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -2.75 Total: 5.94 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -5.85 Total: -29.61 kcal Atomic # 7 Polarization: -24.74 SS G_CDS: 1.46 Total: -23.28 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.04 Total: -3.68 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.10 Total: 13.73 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -24.70 -7.63 -32.33 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242768707.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.076 kcal (2) G-P(sol) polarization free energy of solvation -24.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds