Wall clock time and date at job start Tue Mar 31 2020 05:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37690 * 120.01442 * 2 1 4 4 C 1.39475 * 120.03113 * 179.75534 * 3 2 1 5 5 C 1.48303 * 119.97014 * 180.29975 * 4 3 2 6 6 C 1.39754 * 119.98958 * 359.96982 * 5 4 3 7 7 C 1.38606 * 120.34111 * 179.76074 * 6 5 4 8 8 F 1.35097 * 119.83188 * 180.28138 * 7 6 5 9 9 C 1.37955 * 120.33598 * 0.52162 * 7 6 5 10 10 C 1.40720 * 119.97603 * 359.73863 * 9 7 6 11 11 C 1.41432 * 120.16540 * 180.02562 * 10 9 7 12 12 H 1.07996 * 119.99445 * 154.75578 * 11 10 9 13 13 C 1.39922 * 120.00406 * 334.75795 * 11 10 9 14 14 N 1.30837 * 119.99916 * 342.78800 * 13 11 10 15 15 Si 1.86798 * 120.00333 * 162.78641 * 13 11 10 16 16 H 1.48504 * 109.46848 * 59.99920 * 15 13 11 17 17 H 1.48498 * 109.47122 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47010 * 300.00231 * 15 13 11 19 19 C 1.38796 * 119.99293 * 180.24834 * 5 4 3 20 20 C 1.39514 * 120.05999 * 0.54789 * 4 3 2 21 21 C 1.37637 * 120.03316 * 359.70670 * 20 4 3 22 22 C 1.39736 * 120.02032 * 180.28366 * 2 1 3 23 23 C 1.43207 * 120.02842 * 359.94598 * 22 2 1 24 24 N 3.48412 * 80.36735 * 180.24948 * 2 1 3 25 25 H 1.09006 * 109.46651 * 269.71918 * 1 2 3 26 26 H 1.08991 * 109.47355 * 29.71933 * 1 2 3 27 27 H 1.08999 * 109.46859 * 149.72344 * 1 2 3 28 28 H 1.07996 * 119.98401 * 0.02562 * 3 2 1 29 29 H 1.07995 * 119.82668 * 0.02562 * 6 5 4 30 30 H 1.07998 * 120.00578 * 179.76088 * 9 7 6 31 31 H 0.97000 * 120.00276 * 180.02562 * 14 13 11 32 32 H 1.08004 * 120.16977 * 359.97438 * 19 5 4 33 33 H 1.07999 * 119.98311 * 179.72950 * 20 4 3 34 34 H 1.08006 * 120.01358 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1923 0.0000 4 6 3.5905 1.1927 0.0052 5 6 4.3309 2.4776 0.0119 6 6 3.6309 3.6872 0.0124 7 6 4.3156 4.8923 0.0236 8 9 3.6285 6.0555 0.0298 9 6 5.6950 4.9101 0.0236 10 6 6.4137 3.7003 0.0177 11 6 7.8280 3.7138 0.0181 12 1 8.3758 2.8709 0.4129 13 6 8.5173 4.8190 -0.4928 14 7 7.8992 5.6761 -1.2643 15 14 10.3201 5.0710 -0.0734 16 1 11.1069 3.9055 -0.5506 17 1 10.8139 6.3061 -0.7336 18 1 10.4723 5.2020 1.3979 19 6 5.7189 2.4786 0.0118 20 6 4.2897 -0.0146 -0.0012 21 6 3.6038 -1.2079 -0.0065 22 6 2.2061 -1.2099 -0.0060 23 6 1.4911 -2.4507 -0.0110 24 7 0.9240 -3.4350 -0.0150 25 1 -0.3633 -0.0050 1.0277 26 1 -0.3633 0.8924 -0.5094 27 1 -0.3633 -0.8875 -0.5181 28 1 1.6557 2.1275 0.0004 29 1 2.5510 3.6829 0.0083 30 1 6.2230 5.8522 0.0285 31 1 8.3771 6.4421 -1.6188 32 1 6.2623 1.5452 0.0073 33 1 5.3697 -0.0128 -0.0016 34 1 4.1455 -2.1423 -0.0110 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242771342.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:24 Heat of formation + Delta-G solvation = 9.410833 kcal Electronic energy + Delta-G solvation = -19812.253541 eV Core-core repulsion = 16588.435847 eV Total energy + Delta-G solvation = -3223.817694 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.78001 -39.69418 -37.57312 -36.28217 -34.12782 -32.88872 -31.75095 -29.83354 -28.48482 -27.20593 -25.58419 -23.77526 -22.12394 -20.74537 -20.30053 -18.60274 -17.64243 -16.10004 -15.77753 -15.28076 -15.05303 -14.65807 -14.47384 -14.36841 -14.31435 -14.03202 -13.25628 -13.14379 -12.99185 -12.87556 -12.75763 -12.44057 -12.25141 -12.05197 -11.74692 -11.47553 -11.38168 -11.14304 -11.00395 -10.62469 -10.57618 -10.15171 -9.83249 -9.44903 -8.89790 -8.71237 -7.67099 -7.27361 -6.97267 -4.64951 0.68869 1.45283 2.44144 2.51700 2.67584 2.95772 2.97379 3.01230 3.26567 3.77087 3.95479 3.98218 4.41966 4.73196 4.82127 4.97197 5.31913 5.34746 5.46080 5.50310 5.57746 5.66806 5.68670 5.86708 6.05330 6.19245 6.32555 6.35611 6.49016 6.53353 6.71349 6.83894 6.96034 7.00262 7.29376 7.45688 7.50016 7.54871 7.70067 7.97567 8.32173 8.59381 8.60849 9.95619 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.023583 B = 0.004024 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.991969 B = 6957.075788 C = 8054.643841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.034 4.034 3 C -0.124 4.124 4 C 0.027 3.973 5 C -0.026 4.026 6 C -0.256 4.256 7 C 0.105 3.895 8 F -0.165 7.165 9 C -0.189 4.189 10 C 0.125 3.875 11 C -0.455 4.455 12 H 0.085 0.915 13 C 0.075 3.925 14 N -0.785 5.785 15 Si 0.913 3.087 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.262 1.262 19 C -0.201 4.201 20 C -0.126 4.126 21 C -0.062 4.062 22 C -0.062 4.062 23 C 0.268 3.732 24 N -0.440 5.440 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.135 0.865 29 H 0.106 0.894 30 H 0.131 0.869 31 H 0.286 0.714 32 H 0.107 0.893 33 H 0.139 0.861 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.011 -5.147 1.679 7.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.036 4.036 3 C -0.142 4.142 4 C 0.026 3.974 5 C -0.026 4.026 6 C -0.276 4.276 7 C 0.086 3.914 8 F -0.144 7.144 9 C -0.209 4.209 10 C 0.122 3.878 11 C -0.484 4.484 12 H 0.103 0.897 13 C -0.145 4.145 14 N -0.409 5.409 15 Si 0.737 3.263 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.186 1.186 19 C -0.220 4.220 20 C -0.144 4.144 21 C -0.082 4.082 22 C -0.066 4.066 23 C -0.046 4.046 24 N -0.116 5.116 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.153 0.847 29 H 0.124 0.876 30 H 0.148 0.852 31 H 0.097 0.903 32 H 0.125 0.875 33 H 0.157 0.843 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.879 -6.420 1.514 8.836 hybrid contribution 0.959 0.855 0.024 1.285 sum -4.920 -5.565 1.538 7.586 Atomic orbital electron populations 1.20886 0.90900 1.03123 1.02841 1.19762 0.95788 0.91428 0.96634 1.21103 0.93612 0.97310 1.02146 1.19287 0.92641 0.93284 0.92145 1.18042 0.92938 0.89727 1.01898 1.20304 0.98063 0.90721 1.18546 1.17549 0.90346 0.80082 1.03410 1.91350 1.80392 1.48126 1.94526 1.21423 0.90262 1.00689 1.08556 1.17288 0.93392 0.89706 0.87429 1.19584 0.91006 1.02592 1.35188 0.89704 1.25979 1.01389 0.94681 0.92421 1.69787 1.39116 1.10783 1.21185 0.86279 0.81260 0.78699 0.80102 1.18760 1.20179 1.18594 1.21205 0.91786 0.97656 1.11394 1.21258 1.00942 0.90812 1.01339 1.21017 0.91563 0.98760 0.96871 1.15879 0.92294 0.86203 1.12209 1.25761 0.93013 0.92768 0.93056 1.81210 1.09005 1.11177 1.10180 0.90563 0.90537 0.91825 0.84689 0.87559 0.85164 0.90294 0.87492 0.84311 0.85270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 9.60 36.00 0.35 -0.86 16 2 C -0.03 -0.41 5.91 -104.26 -0.62 -1.03 16 3 C -0.12 -1.72 9.06 -39.32 -0.36 -2.07 16 4 C 0.03 0.43 5.88 -104.82 -0.62 -0.18 16 5 C -0.03 -0.50 5.87 -104.98 -0.62 -1.12 16 6 C -0.26 -5.22 9.41 -38.88 -0.37 -5.58 16 7 C 0.11 2.39 7.28 -39.55 -0.29 2.10 16 8 F -0.16 -3.65 17.26 2.25 0.04 -3.61 16 9 C -0.19 -4.61 8.66 -38.75 -0.34 -4.94 16 10 C 0.12 2.99 5.56 -106.87 -0.59 2.39 16 11 C -0.46 -10.84 9.05 -37.74 -0.34 -11.18 16 12 H 0.08 1.89 7.90 -52.49 -0.41 1.48 16 13 C 0.07 1.72 5.14 -17.35 -0.09 1.63 16 14 N -0.78 -18.88 10.97 55.55 0.61 -18.27 16 15 Si 0.91 17.12 29.59 -169.99 -5.03 12.09 16 16 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 17 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 18 H -0.26 -4.89 7.11 56.52 0.40 -4.48 16 19 C -0.20 -4.25 9.16 -38.51 -0.35 -4.60 16 20 C -0.13 -1.74 9.40 -39.33 -0.37 -2.11 16 21 C -0.06 -0.75 9.74 -39.23 -0.38 -1.13 16 22 C -0.06 -0.78 5.74 -106.83 -0.61 -1.40 16 23 C 0.27 3.54 13.78 -22.47 -0.31 3.23 16 24 N -0.44 -6.49 18.54 41.84 0.78 -5.72 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 0.67 8.08 -51.93 -0.42 0.25 16 27 H 0.06 0.64 7.08 -51.93 -0.37 0.28 16 28 H 0.14 1.76 6.17 -52.49 -0.32 1.43 16 29 H 0.11 1.89 6.16 -52.49 -0.32 1.57 16 30 H 0.13 3.33 6.18 -52.49 -0.32 3.00 16 31 H 0.29 6.28 8.30 -40.82 -0.34 5.94 16 32 H 0.11 2.02 6.17 -52.48 -0.32 1.70 16 33 H 0.14 1.82 6.17 -52.49 -0.32 1.50 16 34 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 305.33 15.07 4.60 4.60 Total: -1.00 -25.45 305.33 -7.71 -33.16 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -2.80 Total: 4.59 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -5.90 Total: -26.85 kcal Atomic # 7 Polarization: -25.37 SS G_CDS: 1.38 Total: -23.98 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.04 Total: -3.61 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -25.45 -7.71 -33.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242771342.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.572 kcal (2) G-P(sol) polarization free energy of solvation -25.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds